Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Anopheles_20sinensis_20[genbank_20GCA_5F000441895.2_202014-07-14] 9,592 sequences; 220,777,669 total letters Query= NC_024625.1 Length=151109 Score E Sequences producing significant alignments: (Bits) Value seq9207 618 4e-172 seq9254 134 1e-26 seq9240 132 5e-26 seq8738 114 1e-20 seq9325 113 4e-20 seq8899 104 2e-17 >seq9207 Length=1443628 Score = 618 bits (684), Expect = 4e-172 Identities = 1254/1835 (68%), Gaps = 45/1835 (2%) Strand=Plus/Minus Query 147943 CGGGTTGAGTGCGCAGATAGTACATGCCCGTCTTGAGGCCCATGCGCCATGCGTAGTCGT 148002 ||| ||| |||||||||||||||||||||||||| |||||||| ||| ||||| || Sbjct 1179132 CGGCTTG-GTGCGCAGATAGTACATGCCCGTCTTCAGGCCCATCTTCCAGCCGTAGAAGT 1179074 Query 148003 GCACCGACGACATGAGCGTG---TACGTCGGGTGCGGCACAAACAGATTAAACGACTGGC 148059 | | ||||| || || || || |||| | | ||| | || ||||||||| Sbjct 1179073 GAATCGACGTCA---GCTTGCCGTAGTTCGGTTCGGCCACGTGAATGTTGAACGACTGGG 1179017 Query 148060 TCTGGTCAATGAACGCGCCACGGTCAGCGGCCATTTCAATGAGTCGCTTT-ATCTTCATC 148118 ||| || |||||||| || ||||| |||||||||| ||| || ||| | | ||| Sbjct 1179016 ACTGATCGATGAACGCACCCCGGTCCGCGGCCATTTTGATGCA-CGTTTTCACCGATATC 1178958 Query 148119 TCCCAGGCCGTCTTGTACAGC-CGCTTGATATGATCGGGAATGCCGTCGATGCGCTGCAC 148177 ||||| ||||||||||||| ||| ||| || | ||||| | ||||| ||||| | Sbjct 1178957 TCCCACACCGTCTTGTACAGGTCGCG-GATGTGCTGCGGAATTTCCTCGATCCGCTGTAT 1178899 Query 148178 CGAGCCGCGGTGCGCAAAAATCTGATTGCGCATTTCGTCCGTGTATAGGTTGAGCTCGAT 148237 ||| ||| |||||||| || || || ||| ||||| | ||| ||| ||| | Sbjct 1178898 CGAACCGTTGTGCGCAAGGATTTGGTTCTTCATATCGTCATCCCACAGGCCGAGTTCGGT 1178839 Query 148238 CAGGTCATCGATCAGATACTGATTCACCACCTGAAACTCGCCGGCGAGCACGCGCCGCAG 148297 ||| || | | ||||| || || |||||||| |||||||| | ||||||||||| Sbjct 1178838 CAGATCCTGCAGCAGATGGTGGTTGACCACCTGGAACTCGCCCGACAGCACGCGCCGATT 1178779 Query 148298 ATACACGTTGCTCGTAAACGGTTCAAACGACTCGTTGTTGCCCAAAATCTGCGCGGTCGT 148357 || ||||| || |||| || ||||||||||||||||||| ||| || || || | Sbjct 1178778 GTAGACGTTCGAAGTGTACGGCTCGAACGACTCGTTGTTGCCCAGAATTTGGGCCGTGGA 1178719 Query 148358 TGCCGTGGGCATGTACGCTACCAGCAGCGAGTTGCGCAAACCGCGATTTTTTATTTTGCG 148417 || || ||||| || | ||| ||||| || || | ||| | || || || Sbjct 1178718 GGCGGTCGGCATCGGTGCCAGCAGGAGCGAATTCCGGATACCATGCTTGGCAATCTTTTC 1178659 Query 148418 CTTCAGAGCCGCCCAGTCCCAGAGCGGCGACGGTGTCACGTTCCACATGTCGTACTGCAG 148477 |||||| | ||||||| ||| || || || ||| | |||||||||||||||||| Sbjct 1178658 CTTCAGCTCGGCCCAGTTCCACAGGTCCGTTGGGGTCTTCTCCCACATGTCGTACTGCAG 1178599 Query 148478 AATGCCGCGGCTAGCGGGGCTGCCCTCGTACGAGCTGTACGGTCCGT-GCGCCGCCGCCA 148536 || || ||| | || | ||||||||||| |||||| |||| ||| || |||| Sbjct 1178598 GATTCCCTTGCTCACCGGACAGCCCTCGTACGTTTCGTACGGACCGTCGCG-GGCGGCCA 1178540 Query 148537 GTTCGCAGCTCGCCTCGAGCGCGCCGTAGTAAATCGTCTCGGCAATTTGCCTGTTGAGCA 148596 || ||||| ||||| || ||||| ||||| || ||||| || ||| ||| ||| Sbjct 1178539 ACTCACAGCTAGCCTCCAGAGCGCCATAGTAGATGGTCTCAAAGATCTGCTGGTTCAGCT 1178480 Query 148597 GCGCCGCCGACTCGCTTTCGTACGGCATACGCAGCCGCACAAACGCGTCGGCAAGGCCCT 148656 || ||| ||||||||||| |||| | | ||||| ||||| | |||| Sbjct 1178479 TTTGTGCTTCCTCACTTTCGTACGGATGGCGCATGAGAATGAACGCATCGGCCATTCCCT 1178420 Query 148657 GTACGCCCACGCCAATGGGCCGGTGTTTAATGTTGGAGAGGCGCGCGCTCTCG-AGCGGA 148715 | ||||| | || || || ||||| |||||||| | ||| ||| | | ||| Sbjct 1178419 GCACGCCGATACCGATAGGTCGGTGGCGCATGTTGGAACGCTTCGC-CTCCGGCACCGGG 1178361 Query 148716 TAGTGGTTGCGGTCGATGATCTTGTCAAGATTGCGCACCACCACCTTTGTAATTCTGC-G 148774 |||| |||| ||||||||| |||| || |||||| || | ||| | | || | Sbjct 1178360 TAGTAGTTGATGTCGATGATTTTGTTCAGGTTGCGCGTGACGATCTTGGCGA-CCTCCTT 1178302 Query 148775 CAGCAATTCA--AAATCGTACTTGTCAT-----CTACGATGCATCGGTTCACGGCGATAG 148827 |||| |||| || |||||| || || || | ||| ||||| || || | Sbjct 1178301 CAGC--TTCACGAAGTCGTACGTGCGATCCGGCCTCACAAACAT--GTTCAGCGCAATCG 1178246 Query 148828 AGGCTAGATTGCACACGGCCGTCTCATCCGGGGCGCTGTACTCTACGATCTCGGCGCACA 148887 | || ||||||||||| || | || ||| | |||||| |||||||| | ||||| Sbjct 1178245 ACGCCAGATTGCACACCGCAATTTCGTCCTTCGACGAGTACTCGACGATCTCCGTGCACA 1178186 Query 148888 GATTGCTGCATTTGATCACGCCCACGTTCTTTTGATTGCTCTTGCTGTTGCACGCGTCCT 148947 | || ||| |||||| ||||||||||| || |||||||| | ||||||||| |||| Sbjct 1178185 GGTTCGAGCACTTGATCGTGCCCACGTTCTGCTGGTTGCTCTTCCGGTTGCACGCATCCT 1178126 Query 148948 TGTACAGCATGTACGGTCCGCCAGTTTCCACCTGCGTTTCCACTAT---GAACCGATGCA 149004 |||| ||||||||||| |||| || || ||||||| || | || ||||| || Sbjct 1178125 TGTAGAGCATGTACGGCACGCCCGTCTCGACCTGCGACTCGATGATCGCGAACC---ACA 1178069 Query 149005 GGTCCTGCGCGCGCACTTGCTGCTCGTAGCGACCCTCCTGCTCGTATAAAGTATACAGCC 149064 | |||||||| ||| ||| | | | ||||| |||| |||||| || ||||||| Sbjct 1178068 GATCCTGCGCCTTCACCTGCCGGATGAACCGACCTTCCTTCTCGTAGCCCGTGTACAGCC 1178009 Query 149065 GCTCGAACGCCTCGCCGTAGCAATCGTCGAGACCGGGGCACTTGTGCGGGCACATGAGCG 149124 |||| ||| | ||||| | | || || |||||||| | |||||| ||||| || Sbjct 1178008 GCTCAAACTCTTCGCCCCACGACTCCGACAGCCCGGGGCAGTCGTGCGGACACATAAGGC 1177949 Query 149125 ACCACACGCCGTCCGCGTACACGCGCTTCATAAACAGATCGGGCACCCAGAGCGCGTACA 149184 ||||| ||| ||| | ||| |||||||| |||||||| |||||||| |||||||| | Sbjct 1177948 TCCACATTTCGTTCGCCTCCACCCGCTTCATGAACAGATCCGGCACCCACAGCGCGTAGA 1177889 Query 149185 TGAGGTCGCGCGCCTTGCAGTCTTCGGCGCCCATGTTGCGGCGCAGGTTGAGCACGCTGA 149244 | ||| ||||| | || || ||| |||| ||| | ||| | | Sbjct 1177888 ACATGTCACGCGCACGGACCTCCTCCTTGCCAGTGTTTTTCTTCAGATCGAGAAACTCAA 1177829 Query 149245 ATATGTCCGCGTGCCACGGCTCAATGTACACCGCGAGCGCGCCCTTGCGC---TTGCCGC 149301 | | || | ||||||||||| | ||| | |||| ||| || ||| ||||||| Sbjct 1177828 ACACATCGCCATGCCACGGCTCGAGGTAGATGGCGAACGCACCGGGACGCTTGTTGCCGC 1177769 Query 149302 CCTGGTCGACGTGGCGCACCATGTTGTTAAACACTCGAACCATAGGTTCAATGCCACTGG 149361 ||||||| || | || || ||||||| | || || | ||| || | | || ||| Sbjct 1177768 CCTGGTCCACATACCGGGCCGTGTTGTTGTAGACACGCAGCATCGGAACCAACCCGTTGG 1177709 Query 149362 CAGTGCCGTTAGTAGAGCTAATGCGACTGCCGCGCGCTCGCACTTTGTGCACGTTGACGC 149421 | ||||| || |||| | || ||| || | ||||||||| | | Sbjct 1177708 AGATACCGTTCGTGCCCGCAATGTACGTACCCTTCGCCCGGATGCAGTGCACGTTCAGAC 1177649 Query 149422 CGATGCCGCCGCCGTACTTTGAGATGGCCGCGCAGTCGCCGAGCGTCGAGTAGATGCCCT 149481 | ||||| ||| || |||| ||||| ||||| | ||||| ||| || |||| Sbjct 1177648 CAATGCCTCCGGCGGACTTGGAGATCAGTGCGCACTGCTTCAGCGTGTCGTAAATTCCCT 1177589 Query 149482 CGATGCTGTCGCGCTTCATGGTCAGCAGAAAGCACGAGCACATTTGCGGAAAACGCGTGC 149541 |||| |||||| | ||| || || |||||||| || ||| ||| || ||||| Sbjct 1177588 CGATACTGTCGTCCGACATCGTTAGGAGAAAGCAGGACGACAGTTGGGGCCGCTGCGTGG 1177529 Query 149542 CGGCCGCGAACATGGTGGGGCTGGCGTGTGTAAAATATTTCTGGCTCATCATCTCGTACG 149601 | ||||| |||||||| || |||||| ||||| ||| || | || | ||||| Sbjct 1177528 CCGCCGCAAACATGGTCGGCGAGGCGTGCGTAAAGTATCGCTCCGAAAGCAAATTGTACG 1177469 Query 149602 ACTCGA--GCACGCGGTCCATGTCATCGCCATGGATGCCTATGGCGACGCGCATCAGCAT 149659 |||| || ||| || ||||| ||||| ||||| || ||||| |||||||||||||| Sbjct 1177468 TTTCGATTGC-CGC-ATCGATGTCCTCGCCGTGGATCCCGATGGCAACGCGCATCAGCAT 1177411 Query 149660 ATGCTGCGGTCGCTCCGCCACTTTGTTTCCAATTTTGAGCAAGTAG--CCGTTTTCTAGT 149717 ||||||||||| || | | ||| || || |||| |||| ||| ||| || Sbjct 1177410 GTGCTGCGGTCGTTCGACGATCTTGCCCTTGATCTTCAGCAGGTAGGACCG--TTCGAGC 1177353 Query 149718 GTCTTGTAGCCAAAGTACTTGTAGTCAAAGTCGCG 149752 || ||| ||||||| || ||||| |||||||||| Sbjct 1177352 GTTTTGAAGCCAAAATAATTGTACCCAAAGTCGCG 1177318 >seq9254 Length=4138565 Score = 134 bits (148), Expect = 1e-26 Identities = 280/412 (68%), Gaps = 5/412 (1%) Strand=Plus/Plus Query 120453 GCCCAACTGTACGAGCAGTCGGTCCGCTACAAACTCAATGTACTCGCACATGGACTGCGC 120512 |||||||| || ||||| ||||| || || ||||| ||||||| |||| | Sbjct 2197041 GCCCAACTCGACCAGCAGCCGGTCGGCAACGAACTCGATGTACTGCGACATCAGGTCACA 2197100 Query 120513 GTTCATGCCCAGCAACGCCACCGGCAACGCCGACGTGAAAAACTCCTTCTCAATGTCCAC 120572 |||||||||||||| | || |||| |||| || | ||||||| || || |||| Sbjct 2197101 GTTCATGCCCAGCATATCGACTGGCAGCGCCTTGGTAAGGAACTCCTGTTCGATTACCAC 2197160 Query 120573 CGCCTCCTTGAACATGGCGAG-CATAGTGTGGCCGGGCATCTTGTGTTCGATGCGCGTTC 120631 ||| || | ||| | || || | | || | | ||| || | | | || Sbjct 2197161 CGCATCGCGAATGATG-CTAGTCACACGCTCGCGCGTCGGCTTTTGAACCAGGTA--TTT 2197217 Query 120632 GGTAGTACAGGCACGCAAAGTCCGTGTGCAGGCCCTCGTCGCGCGATATCAGCTCGTTGC 120691 | || ||||| |||||||| ||||| ||||||||| ||||| ||||||||||| Sbjct 2197218 GAACATA-AGGCAAGCAAAGTCACAGTGCAAGCCCTCGTCACGCGAAATCAGCTCGTTCG 2197276 Query 120692 TAAACGTCAGGCCGGGCATGATGCCTTTCGTCTTGATGTAGAATATGGCGGCAAAGCTGC 120751 || |||| ||| ||||| | ||| | |||| | |||| || ||||||||||||| Sbjct 2197277 AGAAGGTCAAGCCTGGCATCAGTCCTCGCTTCTTAAGCCAGAAGATAGCGGCAAAGCTGC 2197336 Query 120752 CCGAAAAGAACACGCCCTCCACGATGGCAAAGGCGACCATGCGCTCGGCCAACGTCGCCG 120811 | ||||| | ||||| ||| |||||| ||||| | |||||| | || | || Sbjct 2197337 CGCTGAAGAAAATTCCCTCGACGGCGGCAAACGCGACAACACGCTCGCCGAAGTTGGCTT 2197396 Query 120812 TCTTGCTGTCGATCCACTTCATGGCCCACTCGGCCTTTTTGCGCACGCACGG 120863 ||||||| ||||| |||| ||||| || ||||| || ||| ||||| Sbjct 2197397 TCTTGCTCGAAATCCAGTTCAGTGCCCAGTCAGCCTTCTTCTTCACACACGG 2197448 >seq9240 Length=943838 Score = 132 bits (146), Expect = 5e-26 Identities = 154/205 (75%), Gaps = 2/205 (1%) Strand=Plus/Plus Query 133457 ATGTATGGTGGACTCTTTCTGTATATTGTAATCGCCCATCGTG-GACGAGTCCTCGAGCT 133515 ||| | ||| ||||| ||||| || ||||| ||| || |||| | | | ||||| |||| Sbjct 630380 ATGGAGGGTCGACTCCTTCTGAATGTTGTAGTCGGACAGCGTGCGTCCA-TCCTCCAGCT 630438 Query 133516 GCTTGCCCGCGTAAATGAGCCGCTGCTGGTCGGGAGGGATGCCTTCCTTGTCGGTGATCT 133575 ||||||| ||| | || || ||||||||||| || |||||||| |||||||| ||||| Sbjct 630439 GCTTGCCGGCGAAGATCAGACGCTGCTGGTCCGGCGGGATGCCCTCCTTGTCCTGGATCT 630498 Query 133576 TTTGCTTGAGCTGCTCAACCGTGTCGGTGGGCTCCACGTCGACGGTGACGGTTTTGCCGG 133635 | ||| | | ||| | ||| || | |||||| || || | ||| | ||| || || | Sbjct 630499 TCGCCTTCACATTCTCGATCGTATCCGAGGGCTCGACCTCAAGGGTAATGGTCTTACCCG 630558 Query 133636 TCAGAGTTTTTACGAAAATCTGCAT 133660 | || ||||| ||||| |||||||| Sbjct 630559 TGAGGGTTTTGACGAAGATCTGCAT 630583 >seq8738 Length=1280009 Score = 114 bits (126), Expect = 1e-20 Identities = 146/199 (73%), Gaps = 4/199 (2%) Strand=Plus/Plus Query 133464 GTGGACTCTTTCTGTATATTGTAATCGCCCATCGTGGACGAG--TCCTCGAGCTGCTTGC 133521 || ||||| ||||| || |||||||| | | | | ||| || || |||||||||| Sbjct 1177465 GTAGACTCCTTCTGGATGTTGTAATC--CGAAAGAGTACGGCCATCTTCCAGCTGCTTGC 1177522 Query 133522 CCGCGTAAATGAGCCGCTGCTGGTCGGGAGGGATGCCTTCCTTGTCGGTGATCTTTTGCT 133581 | || | ||||| |||||||| || |||||||| || |||||||| ||||| || Sbjct 1177523 CGGCAAAGATGAGACGCTGCTGATCTGGAGGGATTCCCTCCTTGTCCTGAATCTTGGCCT 1177582 Query 133582 TGAGCTGCTCAACCGTGTCGGTGGGCTCCACGTCGACGGTGACGGTTTTGCCGGTCAGAG 133641 | | | ||||| |||||| | |||||||| || | |||| ||| || || || || | Sbjct 1177583 TCACATTCTCAATCGTGTCCGAAGGCTCCACCTCCAACGTGATGGTCTTTCCCGTAAGGG 1177642 Query 133642 TTTTTACGAAAATCTGCAT 133660 | || |||||||||||||| Sbjct 1177643 TCTTGACGAAAATCTGCAT 1177661 Score = 111 bits (122), Expect = 2e-19 Identities = 145/199 (73%), Gaps = 4/199 (2%) Strand=Plus/Plus Query 133464 GTGGACTCTTTCTGTATATTGTAATCGCCCATCGTGGACGAG--TCCTCGAGCTGCTTGC 133521 || ||||| ||||| || |||||||| | | | | ||| || || |||||||||| Sbjct 1177237 GTAGACTCCTTCTGGATGTTGTAATC--CGAAAGGGTACGGCCATCTTCCAGCTGCTTGC 1177294 Query 133522 CCGCGTAAATGAGCCGCTGCTGGTCGGGAGGGATGCCTTCCTTGTCGGTGATCTTTTGCT 133581 | || | ||||| |||||||| || |||||||| || |||||||| ||||| || Sbjct 1177295 CGGCAAAGATGAGACGCTGCTGATCTGGAGGGATTCCCTCCTTGTCCTGAATCTTGGCCT 1177354 Query 133582 TGAGCTGCTCAACCGTGTCGGTGGGCTCCACGTCGACGGTGACGGTTTTGCCGGTCAGAG 133641 | | | ||||| |||||| | ||||| || || | |||| ||| || || ||||| | Sbjct 1177355 TCACATTCTCAATCGTGTCCGAAGGCTCAACCTCCAACGTGATGGTCTTTCCAGTCAGGG 1177414 Query 133642 TTTTTACGAAAATCTGCAT 133660 | || |||||||| ||||| Sbjct 1177415 TCTTGACGAAAATTTGCAT 1177433 >seq9325 Length=2359367 Score = 113 bits (124), Expect = 4e-20 Identities = 151/208 (73%), Gaps = 4/208 (2%) Strand=Plus/Minus Query 133455 AAATGTATGGTGGACTCTTTCTGTATATTGTAATCGCCCATCGTGGACGA--GTCCTCGA 133512 || || | ||| || || ||||| || ||||| ||| || || ||| |||||| | Sbjct 261109 AAGTGAAGGGTCGATTCCTTCTGGATGTTGTAGTCGGACAGAGT--ACGTCCGTCCTCCA 261052 Query 133513 GCTGCTTGCCCGCGTAAATGAGCCGCTGCTGGTCGGGAGGGATGCCTTCCTTGTCGGTGA 133572 ||||||| || ||| | || | |||||||| || || || || || |||||||| || Sbjct 261051 GCTGCTTTCCAGCGAAGATCAAACGCTGCTGATCTGGGGGAATACCCTCCTTGTCCTGGA 260992 Query 133573 TCTTTTGCTTGAGCTGCTCAACCGTGTCGGTGGGCTCCACGTCGACGGTGACGGTTTTGC 133632 |||| ||||| | ||| | ||||| | ||||| || |||| |||| ||| |||| Sbjct 260991 TCTTAGCCTTGACGTTCTCGATGGTGTCCGAAGGCTCGACCTCGAGAGTGATGGTCTTGC 260932 Query 133633 CGGTCAGAGTTTTTACGAAAATCTGCAT 133660 | ||||| || || |||||||||||||| Sbjct 260931 CAGTCAGCGTCTTCACGAAAATCTGCAT 260904 >seq8899 Length=3132144 Score = 104 bits (114), Expect = 2e-17 Identities = 146/200 (73%), Gaps = 4/200 (2%) Strand=Plus/Plus Query 133463 GGTGGACTCTTTCTGTATATTGTAATCGCCCATCGTG-GACGAGTCCTCGAGCTGCTTGC 133521 ||| ||||| ||||| || ||||| || | ||| | | | ||||| |||||||| | Sbjct 384482 GGTCGACTCCTTCTGAATGTTGTAGTCCGAAAGCGTACGGCCA-TCCTCCAGCTGCTTAC 384540 Query 133522 CCGCGTAAATGAGCCGCTGCTGGTCGGGAGGGATGCCTTCCTTGTCGGTGATCTTTTGC- 133580 | ||| | || || ||||| || || || || || |||||||| || ||| ||| || Sbjct 384541 CGGCGAAGATCAGACGCTGTTGATCTGGCGGAATTCCTTCCTTATCC-TGAATTTTCGCC 384599 Query 133581 TTGAGCTGCTCAACCGTGTCGGTGGGCTCCACGTCGACGGTGACGGTTTTGCCGGTCAGA 133640 || | | ||| | |||||| | ||||| || || | ||||| ||| ||||| || || Sbjct 384600 TTCACATTCTCGATCGTGTCCGACGGCTCGACCTCAAGGGTGATGGTCTTGCCAGTGAGG 384659 Query 133641 GTTTTTACGAAAATCTGCAT 133660 ||||| |||||||||||||| Sbjct 384660 GTTTTCACGAAAATCTGCAT 384679 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 483362837846080