Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Anopheles_20sinensis_20[genbank_20GCA_5F000441895.2_202014-07-14] 9,592 sequences; 220,777,669 total letters Query= NC_025412.1 Length=369360 Score E Sequences producing significant alignments: (Bits) Value seq8738 105 2e-17 seq8899 102 2e-16 seq9240 84.2 5e-11 >seq8738 Length=1280009 Score = 105 bits (116), Expect = 2e-17 Identities = 147/206 (71%), Gaps = 0/206 (0%) Strand=Plus/Minus Query 206173 CAGATATTTTGCAAAACGCTCACAGGAAAAACGATCACTTTGGAAGTGGAAAGTTCTGAC 206232 ||||| || ||| || || || ||||| || ||||| ||||| ||||| ||| ||| Sbjct 1177658 CAGATTTTCGTCAAGACCCTTACGGGAAAGACCATCACGTTGGAGGTGGAGCCTTCGGAC 1177599 Query 206233 ACAGTCGAATCAGTAAAGCAAAAGATTCAAGAAAAAGAAGGAATTTTGCCGGACGCTCAA 206292 || | || || ||| |||||||| || || || ||||| || || || Sbjct 1177598 ACGATTGAGAATGTGAAGGCCAAGATTCAGGACAAGGAGGGAATCCCTCCAGATCAGCAG 1177539 Query 206293 AGACTTATCTTCGCCGGAAAGCAGTTGGAAGATGGAAGGACTTTGGCCGATTACAACGTC 206352 | || ||||| ||||| |||||| |||||||||| | ||| | | ||||||||| || Sbjct 1177538 CGTCTCATCTTTGCCGGCAAGCAGCTGGAAGATGGCCGTACTCTTTCGGATTACAACATC 1177479 Query 206353 CAGAAAGAGTCTACTCTTCACCTTGT 206378 ||||| ||||||||||| || || || Sbjct 1177478 CAGAAGGAGTCTACTCTCCATCTGGT 1177453 Score = 95.1 bits (104), Expect = 3e-14 Identities = 138/195 (71%), Gaps = 0/195 (0%) Strand=Plus/Minus Query 206184 CAAAACGCTCACAGGAAAAACGATCACTTTGGAAGTGGAAAGTTCTGACACAGTCGAATC 206243 ||| || || || ||||| || ||||| ||||| || || ||| ||||| | || Sbjct 1177419 CAAGACCCTGACTGGAAAGACCATCACGTTGGAGGTTGAGCCTTCGGACACGATTGAGAA 1177360 Query 206244 AGTAAAGCAAAAGATTCAAGAAAAAGAAGGAATTTTGCCGGACGCTCAAAGACTTATCTT 206303 || ||| |||||||| || || || ||||| || || || | || ||||| Sbjct 1177359 TGTGAAGGCCAAGATTCAGGACAAGGAGGGAATCCCTCCAGATCAGCAGCGTCTCATCTT 1177300 Query 206304 CGCCGGAAAGCAGTTGGAAGATGGAAGGACTTTGGCCGATTACAACGTCCAGAAAGAGTC 206363 ||||| |||||| |||||||||| | || | | ||||||||| ||||||| ||||| Sbjct 1177299 TGCCGGCAAGCAGCTGGAAGATGGCCGTACCCTTTCGGATTACAACATCCAGAAGGAGTC 1177240 Query 206364 TACTCTTCACCTTGT 206378 |||||| || || || Sbjct 1177239 TACTCTCCATCTGGT 1177225 >seq8899 Length=3132144 Score = 102 bits (112), Expect = 2e-16 Identities = 146/206 (71%), Gaps = 0/206 (0%) Strand=Plus/Minus Query 206185 AAAACGCTCACAGGAAAAACGATCACTTTGGAAGTGGAAAGTTCTGACACAGTCGAATCA 206244 ||||| ||||| || || || ||||| | || || || || ||||| |||| Sbjct 384664 AAAACCCTCACTGGCAAGACCATCACCCTTGAGGTCGAGCCGTCGGACACGATCGAGAAT 384605 Query 206245 GTAAAGCAAAAGATTCAAGAAAAAGAAGGAATTTTGCCGGACGCTCAAAGACTTATCTTC 206304 || ||| || ||||| || || ||||||||| ||| || || | || |||||| Sbjct 384604 GTGAAGGCGAAAATTCAGGATAAGGAAGGAATTCCGCCAGATCAACAGCGTCTGATCTTC 384545 Query 206305 GCCGGAAAGCAGTTGGAAGATGGAAGGACTTTGGCCGATTACAACGTCCAGAAAGAGTCT 206364 ||||| |||||| |||| ||||| | || | | || |||||| | ||||| ||||| Sbjct 384544 GCCGGTAAGCAGCTGGAGGATGGCCGTACGCTTTCGGACTACAACATTCAGAAGGAGTCG 384485 Query 206365 ACTCTTCACCTTGTTTTGAGACTTCG 206390 || |||||||| ||| || ||||||| Sbjct 384484 ACCCTTCACCTGGTTCTGCGACTTCG 384459 Score = 86.0 bits (94), Expect = 1e-11 Identities = 82/105 (78%), Gaps = 0/105 (0%) Strand=Plus/Plus Query 204752 CGAAGTCTCAAAACAAGGTGAAGAGTAGACTCTTTCTGGACATTATAGTCAGCCAAAGTC 204811 ||||||| || ||| |||||||| || ||||| ||||| | || ||||| | | || Sbjct 384459 CGAAGTCGCAGAACCAGGTGAAGGGTCGACTCCTTCTGAATGTTGTAGTCCGAAAGCGTA 384518 Query 204812 CTTCCATCTTCCAGCTGCTTTCCGGCGAAGATAAGCCGTTGTTGA 204856 | ||||| ||||||||||| ||||||||||| || || |||||| Sbjct 384519 CGGCCATCCTCCAGCTGCTTACCGGCGAAGATCAGACGCTGTTGA 384563 >seq9240 Length=943838 Score = 84.2 bits (92), Expect = 5e-11 Identities = 142/206 (69%), Gaps = 0/206 (0%) Strand=Plus/Minus Query 206173 CAGATATTTTGCAAAACGCTCACAGGAAAAACGATCACTTTGGAAGTGGAAAGTTCTGAC 206232 ||||| || |||||| ||||| || || || || || | || || || || || Sbjct 630580 CAGATCTTCGTCAAAACCCTCACGGGTAAGACCATTACCCTTGAGGTCGAGCCCTCGGAT 630521 Query 206233 ACAGTCGAATCAGTAAAGCAAAAGATTCAAGAAAAAGAAGGAATTTTGCCGGACGCTCAA 206292 || |||| || ||| ||||| || || || || || || ||||||| || Sbjct 630520 ACGATCGAGAATGTGAAGGCGAAGATCCAGGACAAGGAGGGCATCCCGCCGGACCAGCAG 630461 Query 206293 AGACTTATCTTCGCCGGAAAGCAGTTGGAAGATGGAAGGACTTTGGCCGATTACAACGTC 206352 | || ||||||||||| |||||| |||| |||||| | || || |||| |||||| | Sbjct 630460 CGTCTGATCTTCGCCGGCAAGCAGCTGGAGGATGGACGCACGCTGTCCGACTACAACATT 630401 Query 206353 CAGAAAGAGTCTACTCTTCACCTTGT 206378 ||||| ||||| || || || || || Sbjct 630400 CAGAAGGAGTCGACCCTCCATCTGGT 630375 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1181675557178232