Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Anopheles_20sinensis_20[genbank_20GCA_5F000441895.2_202014-07-14] 9,592 sequences; 220,777,669 total letters Query= NC_026440.1 Length=2243109 Score E Sequences producing significant alignments: (Bits) Value seq9254 116 5e-20 seq9249 113 6e-19 seq9207 111 2e-18 >seq9254 Length=4138565 Score = 116 bits (128), Expect = 5e-20 Identities = 187/265 (71%), Gaps = 3/265 (1%) Strand=Plus/Minus Query 1455796 AGGCCGAGGCCTCCTTTTGGACCGCCGAGGAGGTCGACCTCGGCGCCGACACGGTCCACT 1455855 |||||||||| || || ||||| | |||||||| |||||| |||| | ||| Sbjct 2197841 AGGCCGAGGCATCTTTCTGGACGGTAGAGGAGGTAGACCTCTCGAAGGACATGAAGGACT 2197782 Query 1455856 GGGTGTCGCTGAGCGACGA-CGAGCGCCATTTCATCAAGCACGTCCTCGCCTTTTTTCGC 1455914 ||| |||| ||| ||| ||| || || |||||| |||||| ||||| ||| ||||| Sbjct 2197781 GGGAGTCGTTGAAAC-CGAGCGAACGTCACTTCATCTCGCACGTGCTCGC-TTTCTTCGC 2197724 Query 1455915 CGCCAGCGATGGCATCGTGGCCGAGAACCTGGCCGGCCGCTTTATGAAAGAGGTCCAATT 1455974 ||| || || ||||| |||||| |||| || || || | | || || || | Sbjct 2197723 CGCATCGGACGGAATCGTCAACGAGAATCTGGTCGAACGATTCAGCCAGGAAGTGCAGGT 2197664 Query 1455975 GCCAGAGGCACGTTTGTTTTACGGGTTCCAGATCGCCATCGAAAACATCCACTCTGAAAC 1456034 | | || || || | || || || ||||||||||| || |||||| ||||| || | Sbjct 2197663 GACCGAAGCGCGCTGCTTCTATGGTTTCCAGATCGCGATGGAAAACGTCCACAGCGAGAT 2197604 Query 1456035 CTACTCGCTCCTGATCGACACCTAC 1456059 ||||| || ||||||||||| ||| Sbjct 2197603 GTACTCCCTGCTGATCGACACGTAC 2197579 >seq9249 Length=5918260 Score = 113 bits (124), Expect = 6e-19 Identities = 165/232 (71%), Gaps = 6/232 (3%) Strand=Plus/Plus Query 724911 ATCTACAAGGTGCTCAAGCAGGTGCACCCCCGAACCGTTGGGCCATCCTCCAACAAGTCC 724970 |||||||||||||| |||||||| || || |||| |||| || |||| || Sbjct 13059 ATCTACAAGGTGCTGAAGCAGGTCCATCCGGACACCGG-----CATC-TCGTCCAAGGCC 13112 Query 724971 ATGTCGATCATGAACTCGTTTGTCAACGACATGATCGACCGCATCGGCACCGAGGCCGGT 725030 ||| || |||||| || ||||||||||| |||| || || | | || || Sbjct 13113 ATGAGCATTATGAACAGCTTCGTCAACGACATCTTCGAGCGGATTGCAGCGGAAGCGTCC 13172 Query 725031 CGCCTGGCGCGCTCCAACAAGCGCAACACGATCGGCACGCGCGAGATCCAGACCGCCGTG 725090 || ||||||| || |||||| ||| || ||| | |||||||| ||||||||||| Sbjct 13173 CGGCTGGCGCACTACAACAAACGCTCGACCATCACGTCCCGCGAGATTCAGACCGCCGTC 13232 Query 725091 CGCCTGATCATGCGCGGCGAACTGGCCAGGCACGCCGTCTCCGAGGGCACCA 725142 || ||| | ||| || || ||||||| |||||||| |||||||| |||| Sbjct 13233 CGGCTGCTGTTGCCGGGTGAGCTGGCCAAACACGCCGTGTCCGAGGGTACCA 13284 >seq9207 Length=1443628 Score = 111 bits (122), Expect = 2e-18 Identities = 169/241 (70%), Gaps = 0/241 (0%) Strand=Plus/Plus Query 259945 CACGCCGCGCCCGCAGAATTCGTCGTGCTTTCTGTTGGACATGAAGGCCGATTCGATCGA 260004 ||||| ||| || || ||||| |||||||| | ||| || ||| ||||| Sbjct 1177530 CACGCAGCGGCCCCAACTGTCGTCCTGCTTTCTCCTAACGATGTCGGACGACAGTATCGA 1177589 Query 260005 GGGCATCTATGACACGCTCAAGCAGTGCGCGCTCATCTCCAAGGCGGCCGGCGGCATCGG 260064 ||| || || |||||||| ||||||||||| || ||||||||| | ||||| ||||| || Sbjct 1177590 GGGAATTTACGACACGCTGAAGCAGTGCGCACTGATCTCCAAGTCCGCCGGAGGCATTGG 1177649 Query 260065 TTTTGCCGCACACAAGGTGCGCGCCGCGGGCGCCTACGTGGCGGGCACCAACGGCCAGTC 260124 | | || ||| | || || ||| | ||| | |||||||| ||||| || Sbjct 1177650 TCTGAACGTGCACTGCATCCGGGCGAAGGGTACGTACATTGCGGGCACGAACGGTATCTC 1177709 Query 260125 CAACGGCCTTGTGCCCATGCTTCGCGTTTTTAACGACACGGCGCGCTACGTCGACCAGTG 260184 |||||| | || || ||||| || || | ||| ||||||| || || || |||||| | Sbjct 1177710 CAACGGGTTGGTTCCGATGCTGCGTGTCTACAACAACACGGCCCGGTATGTGGACCAGGG 1177769 Query 260185 C 260185 | Sbjct 1177770 C 1177770 Score = 96.9 bits (106), Expect = 5e-14 Identities = 95/120 (79%), Gaps = 2/120 (2%) Strand=Plus/Plus Query 262122 TCGAGACCGGCACGCCCTACATGGTCTACAAGGACGCCGTCAACCTGACCAGCAACCAGC 262181 ||||||| ||| ||| |||||| |||||||||| || ||||| || |||||||||| Sbjct 1178096 TCGAGACGGGCGTGCCGTACATGCTCTACAAGGATGCGTGCAACCGGAAGAGCAACCAGC 1178155 Query 262182 AGAACCTGGGCACCACGACAGAG-GCCAACCTGTGCACCGAGATCGTCCAGTTTTCGTCG 262240 ||||| ||||||| | | || | | ||||||||||| ||||||||| ||| |||||| Sbjct 1178156 AGAACGTGGGCACGATCA-AGTGCTCGAACCTGTGCACGGAGATCGTCGAGTACTCGTCG 1178214 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 7176886033969904