Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Anopheles_20sinensis_20[genbank_20GCA_5F000441895.2_202014-07-14] 9,592 sequences; 220,777,669 total letters Query= NC_026511.1 Length=140913 Score E Sequences producing significant alignments: (Bits) Value seq9240 122 8e-23 seq8738 107 2e-18 seq9325 104 2e-17 seq9239 102 7e-17 seq8899 91.5 1e-13 >seq9240 Length=943838 Score = 122 bits (134), Expect = 8e-23 Identities = 163/227 (72%), Gaps = 0/227 (0%) Strand=Plus/Plus Query 35510 CCACCACGTAACCTCAACACCAAATGTAACGTACTCTCCTTTTGAATGTTGTAATCGGCC 35569 |||||||| | | || ||||| ||| | || |||||| ||||||||||| |||| | Sbjct 630357 CCACCACGGAGGCGCAGCACCAGATGGAGGGTCGACTCCTTCTGAATGTTGTAGTCGGAC 630416 Query 35570 AAGGTTCGCTCGTCGTCCAGCTGCTTACCCGCAAATATCAACCGCTGCTGGTCCGAAGGA 35629 | || || | || ||||||||||| || || || |||| ||||||||||||| || Sbjct 630417 AGCGTGCGTCCATCCTCCAGCTGCTTGCCGGCGAAGATCAGACGCTGCTGGTCCGGCGGG 630476 Query 35630 ACGCTCTCCTTGTCCATGATCTTTTGCTTCAGAGTTGCCACCGTGTCGCTCGATTCCACC 35689 | || |||||||||| |||||| ||||| | | | | ||| || | || ||| Sbjct 630477 ATGCCCTCCTTGTCCTGGATCTTCGCCTTCACATTCTCGATCGTATCCGAGGGCTCGACC 630536 Query 35690 TCCACCGTGATCGTTTTACCCGTCAAAGTTTTCACAAATATCTGCAT 35736 || | || || || |||||||| | ||||| || || |||||||| Sbjct 630537 TCAAGGGTAATGGTCTTACCCGTGAGGGTTTTGACGAAGATCTGCAT 630583 >seq8738 Length=1280009 Score = 107 bits (118), Expect = 2e-18 Identities = 149/209 (71%), Gaps = 0/209 (0%) Strand=Plus/Plus Query 35528 ACCAAATGTAACGTACTCTCCTTTTGAATGTTGTAATCGGCCAAGGTTCGCTCGTCGTCC 35587 |||| ||| | ||| |||||| || ||||||||||| | | || || | || ||| Sbjct 1177453 ACCAGATGGAGAGTAGACTCCTTCTGGATGTTGTAATCCGAAAGAGTACGGCCATCTTCC 1177512 Query 35588 AGCTGCTTACCCGCAAATATCAACCGCTGCTGGTCCGAAGGAACGCTCTCCTTGTCCATG 35647 |||||||| || ||||| || | |||||||| || | ||| | | |||||||||| Sbjct 1177513 AGCTGCTTGCCGGCAAAGATGAGACGCTGCTGATCTGGAGGGATTCCCTCCTTGTCCTGA 1177572 Query 35648 ATCTTTTGCTTCAGAGTTGCCACCGTGTCGCTCGATTCCACCTCCACCGTGATCGTTTTA 35707 ||||| ||||| | | | | |||||| | |||||||||| |||||| || || Sbjct 1177573 ATCTTGGCCTTCACATTCTCAATCGTGTCCGAAGGCTCCACCTCCAACGTGATGGTCTTT 1177632 Query 35708 CCCGTCAAAGTTTTCACAAATATCTGCAT 35736 ||||| | || || || || |||||||| Sbjct 1177633 CCCGTAAGGGTCTTGACGAAAATCTGCAT 1177661 Score = 105 bits (116), Expect = 6e-18 Identities = 150/211 (71%), Gaps = 0/211 (0%) Strand=Plus/Plus Query 35528 ACCAAATGTAACGTACTCTCCTTTTGAATGTTGTAATCGGCCAAGGTTCGCTCGTCGTCC 35587 |||| ||| | ||| |||||| || ||||||||||| | | ||| || | || ||| Sbjct 1177225 ACCAGATGGAGAGTAGACTCCTTCTGGATGTTGTAATCCGAAAGGGTACGGCCATCTTCC 1177284 Query 35588 AGCTGCTTACCCGCAAATATCAACCGCTGCTGGTCCGAAGGAACGCTCTCCTTGTCCATG 35647 |||||||| || ||||| || | |||||||| || | ||| | | |||||||||| Sbjct 1177285 AGCTGCTTGCCGGCAAAGATGAGACGCTGCTGATCTGGAGGGATTCCCTCCTTGTCCTGA 1177344 Query 35648 ATCTTTTGCTTCAGAGTTGCCACCGTGTCGCTCGATTCCACCTCCACCGTGATCGTTTTA 35707 ||||| ||||| | | | | |||||| | || ||||||| |||||| || || Sbjct 1177345 ATCTTGGCCTTCACATTCTCAATCGTGTCCGAAGGCTCAACCTCCAACGTGATGGTCTTT 1177404 Query 35708 CCCGTCAAAGTTTTCACAAATATCTGCATTC 35738 || |||| || || || || || ||||||| Sbjct 1177405 CCAGTCAGGGTCTTGACGAAAATTTGCATTC 1177435 >seq9325 Length=2359367 Score = 104 bits (114), Expect = 2e-17 Identities = 140/195 (72%), Gaps = 0/195 (0%) Strand=Plus/Minus Query 35546 TCCTTTTGAATGTTGTAATCGGCCAAGGTTCGCTCGTCGTCCAGCTGCTTACCCGCAAAT 35605 ||||| || |||||||| |||| || || || |||| ||||||||||| || || || Sbjct 261094 TCCTTCTGGATGTTGTAGTCGGACAGAGTACGTCCGTCCTCCAGCTGCTTTCCAGCGAAG 261035 Query 35606 ATCAACCGCTGCTGGTCCGAAGGAACGCTCTCCTTGTCCATGATCTTTTGCTTCAGAGTT 35665 ||||| |||||||| || | |||| | |||||||||| |||||| ||| | | Sbjct 261034 ATCAAACGCTGCTGATCTGGGGGAATACCCTCCTTGTCCTGGATCTTAGCCTTGACGTTC 260975 Query 35666 GCCACCGTGTCGCTCGATTCCACCTCCACCGTGATCGTTTTACCCGTCAAAGTTTTCACA 35725 | | ||||| | || ||||| | ||||| || || || |||| || ||||| Sbjct 260974 TCGATGGTGTCCGAAGGCTCGACCTCGAGAGTGATGGTCTTGCCAGTCAGCGTCTTCACG 260915 Query 35726 AATATCTGCATTCTG 35740 || |||||||||||| Sbjct 260914 AAAATCTGCATTCTG 260900 >seq9239 Length=1433044 Score = 102 bits (112), Expect = 7e-17 Identities = 217/319 (68%), Gaps = 4/319 (1%) Strand=Plus/Minus Query 44103 CTAGAGACGGCCTCCACCCATGATCCTTTGTGGAACGCTGCCCAAACACAACTGTTGCGA 44162 || || |||||| || || || | |||||||||| ||||| || || || Sbjct 683558 CTGGAAACGGCCAAAACGCACGACGATCTGTGGAACGCCGCCCAGCTGCAGATGGTGAAG 683499 Query 44163 GAAGGTAAAATGCACCAATACATGCGTATGTATTGGTGCAAGAAGATATTGGAGTGGTCG 44222 || || || ||||| || | |||| ||||| ||| ||||||||| | |||||| | Sbjct 683498 GAGGGCAAGATGCATGGATTCCTGCGGATGTACTGGGCGAAGAAGATACTCGAGTGGA-G 683440 Query 44223 GAAGATGCGCAAACC-GCGCTCGTTCATGCCATCTATCTGAACGACAAGTACAGTTTGGA 44281 || | || | | ||||||| || ||||| |||||||| ||||| | || Sbjct 683439 CAAAACGCCCGAGGAAGCGCTCGAGGCGGCGATCTACCTGAACGATCGTTACAGCCTAGA 683380 Query 44282 CGGTCGCGACCCCAACGGGTACGTAGGATGTATGTGGTCCATTTGCGGTGTCCACGA-CA 44340 || |||||||| ||||||||||| || || |||||||| || || | ||||| || Sbjct 683379 TGGGCGCGACCCGAACGGGTACGTCGGTTGCATGTGGTCGATCGCTGGAATTCACGATCA 683320 Query 44341 GGGCGTGGCGAGAGCTACCCATCTACGGCAAAGTGCGCTACATGAACTACAACGGTTGCG 44400 ||| ||| || | ||||| ||| ||| | | |||||||||||| | ||||| Sbjct 683319 GGG-ATGGAAGGAACGGGACATCTTCGGTAAAATAAGATACATGAACTACGAAGGTTGTA 683261 Query 44401 TCAGAAAGTTTGATGTAAA 44419 || ||||| ||||| || Sbjct 683260 AAAGGAAGTTCGATGTGAA 683242 >seq8899 Length=3132144 Score = 91.5 bits (100), Expect = 1e-13 Identities = 166/240 (69%), Gaps = 5/240 (2%) Strand=Plus/Plus Query 35507 TTTCCACCACGTAACCTCAACACCAAATGTAACGTACTCTCCTTTTGAATGTTGTAATCG 35566 || |||||||| | | || |||| || | || |||||| ||||||||||| || Sbjct 384450 TTACCACCACGAAGTCGCAGAACCAGGTGAAGGGTCGACTCCTTCTGAATGTTGTAGTCC 384509 Query 35567 GCCAAGGTTCGCTCGTCGTCCAGCTGCTTACCCGCAAATATCAACCGCTGCTGGTCCGAA 35626 | | || || | || |||||||||||||| || || |||| ||||| || || | Sbjct 384510 GAAAGCGTACGGCCATCCTCCAGCTGCTTACCGGCGAAGATCAGACGCTGTTGATCTGGC 384569 Query 35627 GGAACGCTCTCCTTGTCCATGATCTTTTG-CTTCAGAGTTGCCACCGTGTCGCTCGATTC 35685 |||| | ||||| ||| ||| ||| | ||||| | | | | |||||| || || Sbjct 384570 GGAATTCCTTCCTTATCC-TGAATTTTCGCCTTCACATTCTCGATCGTGTCCGACGGCTC 384628 Query 35686 CACCTCCACCGTGATCGTTTTACCCGTCAAAGTTTTCACAAATATCTGCA---TTCTGTG 35742 ||||| | ||||| || || || || | |||||||| || ||||||| ||||||| Sbjct 384629 GACCTCAAGGGTGATGGTCTTGCCAGTGAGGGTTTTCACGAAAATCTGCATCTTTCTGTG 384688 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 450739549847360