Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Anopheles_20sinensis_20[genbank_20GCA_5F000441895.2_202014-07-14] 9,592 sequences; 220,777,669 total letters Query= NC_027778.1 Length=124244 Score E Sequences producing significant alignments: (Bits) Value seq9135 109 4e-19 seq9254 86.0 5e-12 >seq9135 Length=816509 Score = 109 bits (120), Expect = 4e-19 Identities = 269/404 (67%), Gaps = 8/404 (2%) Strand=Plus/Minus Query 19542 AAGTTCTTTGCACATTATAATACTAGATGAATTGGACGCAATCTGTAAGCAAAGAGGTTC 19601 |||| |||||| ||||| || | |||||| | ||||| || || || | | || | Sbjct 24064 AAGTGGTTTGCATATTATTATTTTTGATGAAATAGACGCTATTTGCAAAGCACGTGGAAC 24005 Query 19602 TGGTGTA---AAT---GGAGTACATGACACTGTTGTCAATCAACTCCTGTCAAAATTAGA 19655 | || | ||| || |||||||| ||||||||||||||| | | ||||| | || Sbjct 24004 AGTTGGAGGCAATTCTGGTGTACATGATACTGTTGTCAATCAATTGTTAGCAAAAATTGA 23945 Query 19656 CGGTGTTAACCAACTGAATAATATTTTAGTTATTGGCATGACTAATAGACTGGAATTAAT 19715 ||||| | ||| ||||||| ||| | || ||||| ||||| || |||| || | || Sbjct 23944 TGGTGTCGAACAATTGAATAACATTCTGGTGATTGGTATGACGAACAGACGAGATATGAT 23885 Query 19716 AGACAGCGCCTTATTACGACCCGGTCGGTTGGAAATAAAGATCGAAATTAACTTACCCGA 19775 || || ||||| || || ||||| |||||| | | || ||||| | | ||||| | Sbjct 23884 TGATGAAGCATTATTGCGGCCAGGTCGTTTGGAAGTTCAAATGGAAATCAGCCTACCCAA 23825 Query 19776 TGAATGTGGACGTGTGGAAATTTTAAACATACATACATCAAC-CATGCGACAAAATAACC 19834 ||| ||| ||| | | ||| | | || ||||| || | ||| || ||| Sbjct 23824 CGAAGATGGCCGTATACAGATTCTTCAAATCCATAC-TCGTCGAATGAAGGAATTTAAAA 23766 Query 19835 TTTTAAATGACGATGTAGATCTAGAAGAAATTGCAGCGGCTACCAAAAACTATAGCGGCG 19894 || | ||||| ||| || ||| | | | || ||||||| ||| |||| Sbjct 23765 AACTAGCTCCGGATGTTGATTTACGCGAATTGGGCGTAATGACTAAAAACTTTAGTGGCG 23706 Query 19895 CAGAACTTGAGGGATTAGTGAGGGCCGCCCAATCAATTGCAATG 19938 | ||||| || || ||||| | ||||| ||||| | ||| ||| Sbjct 23705 CTGAACTAGAAGGTTTAGTTCGTGCCGCTCAATCTACTGCTATG 23662 >seq9254 Length=4138565 Score = 86.0 bits (94), Expect = 5e-12 Identities = 116/162 (72%), Gaps = 0/162 (0%) Strand=Plus/Minus Query 44120 TTTGGAGAACGACTTGTCGCGTTTGCAGTTGTGGAAGGCATTTTCTTTTCAGGATCGTTT 44179 || || || || ||||||||||||| | || || || |||||||| || ||| Sbjct 2197388 TTCGGCGAGCGTGTTGTCGCGTTTGCCGCCGTCGAGGGAATTTTCTTCAGCGGCAGCTTT 2197329 Query 44180 GCGGCCATATTTTGGTTAAAGAAACGAGGTTTGATGCCTGGGTTGACGTTTTCAAATGAG 44239 || || || || ||| | ||||| ||||| ||||||| || ||||| || || || ||| Sbjct 2197328 GCCGCTATCTTCTGGCTTAAGAAGCGAGGACTGATGCCAGGCTTGACCTTCTCGAACGAG 2197269 Query 44240 TTAATAAGTCGTGATGAAGGCTTACATTGCGATTTTGCTTGC 44281 | || ||||| || ||||| || || || ||||||||| Sbjct 2197268 CTGATTTCGCGTGACGAGGGCTTGCACTGTGACTTTGCTTGC 2197227 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 397409536399960