Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Anopheles_20sinensis_20[genbank_20GCA_5F000441895.2_202014-07-14] 9,592 sequences; 220,777,669 total letters Query= NC_027925.1 Length=496396 Score E Sequences producing significant alignments: (Bits) Value seq9254 114 4e-20 seq9207 104 7e-17 >seq9254 Length=4138565 Score = 114 bits (126), Expect = 4e-20 Identities = 128/170 (75%), Gaps = 1/170 (1%) Strand=Plus/Minus Query 443696 CAGCTTCGTCGAGCGACTAGTCGCTTTTGCTGTGGTCGAAGGACTGTTGTTTAGCGGCAG 443755 || ||||| |||||| | ||||| ||||| | ||||| ||| | || || |||||||| Sbjct 2197392 CAACTTCGGCGAGCGTGTTGTCGCGTTTGCCGCCGTCGAGGGAATTTTCTTCAGCGGCAG 2197333 Query 443756 CTTTAGCCTCCATCTTCTGGTTGAAAAAGCGTGGACTTATGCACGGTCTGACCTTTAGTA 443815 |||| ||| | ||||||||| | || ||||| ||||| |||| || ||||||| | Sbjct 2197332 CTTT-GCCGCTATCTTCTGGCTTAAGAAGCGAGGACTGATGCCAGGCTTGACCTTCTCGA 2197274 Query 443816 ACGAACTGATCAGTCGGGACGAGGGTTTGCATTGCGACTTCGCCTGTCTT 443865 |||| ||||| || |||||||| ||||| || ||||| || || ||| Sbjct 2197273 ACGAGCTGATTTCGCGTGACGAGGGCTTGCACTGTGACTTTGCTTGCCTT 2197224 >seq9207 Length=1443628 Score = 104 bits (114), Expect = 7e-17 Identities = 245/357 (69%), Gaps = 16/357 (4%) Strand=Plus/Plus Query 254981 CCAATGATCCGTGTGTTCAACAACGTGGCTCGCTACGTCGATCAAGGGGGCGGCAAACGC 255040 || ||| | ||||| | ||||||| ||| || || || || || || ||| ||| || Sbjct 1177723 CCGATGCTGCGTGTCTACAACAACACGGCCCGGTATGTGGACCAGGGCGGCAACAAGCGT 1177782 Query 255041 CCAGGAGCGTTCACCATCTACCTGGAGCCGTGGCACGCCGA---CATTGAACGGTTTTTA 255097 || || |||||| |||||||||| ||||||||||| | ||| |||| |||| | Sbjct 1177783 CCCGGTGCGTTCGCCATCTACCTCGAGCCGTGGCATGGCGATGTGTTTGA---GTTTCTC 1177839 Query 255098 CTGCTGTCCGACAAGACCGGCACCGAGGAGCTGATCGCCCGCGACATCTAC-AC-CGCTG 255155 ||| | || || |||| |||||| | || || ||||| | | || ||||| Sbjct 1177840 GATCTGAAGAAAAACACTGGCAAGGAGGAGGTCCGTGCGCGTGACATGTTCTACGCGCTG 1177899 Query 255156 TCTGGTGCTGCGATCTGTTTATGCGACGCGTGGA-ACGAGACGAGACCTGGAGCCTCATG 255214 | ||||| | |||||||| ||| || ||||| ||| |||| | |||||||| ||| Sbjct 1177900 T-GGGTGCCG-GATCTGTTCATGAAGCGGGTGGAGGCGA-ACGAAATGTGGAGCCTTATG 1177956 Query 255215 TGTCCCAACTTATCGCCCGGTCTAGTC-GACTCTTGGGGTGACGAGTTTGAAAAACTGTA 255273 ||||| || | ||||| || ||| || || ||||| || |||||||| ||||| Sbjct 1177957 TGTCCGCACGACTGCCCCGGGCT-GTCGGAGTCGTGGGGCGAAGAGTTTGAGCGGCTGTA 1178015 Query 255274 TCTGGAGTACGAGCGTGCCGGCCGGTTCGTACGCCAAGTGCCCGCGAAGAAGATCTG 255330 || |||||| | || |||||| | || || ||| ||| || |||||| Sbjct 1178016 CACGGGCTACGAGAAGGAAGGTCGGTTCATCCGGCAGGTGAAGGCGCAG--GATCTG 1178070 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1588140797476440