Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Anopheles_20sinensis_20[genbank_20GCA_5F000441895.2_202014-07-14] 9,592 sequences; 220,777,669 total letters Query= NC_028091.1 Length=196300 Score E Sequences producing significant alignments: (Bits) Value seq9207 140 4e-28 >seq9207 Length=1443628 Score = 140 bits (154), Expect = 4e-28 Identities = 574/893 (64%), Gaps = 19/893 (2%) Strand=Plus/Minus Query 110707 GTAGATGTTTGTTGTGTATGGTTCAAAGCATTCATTATTACCCAAGATTTGTGCGGTGGA 110766 ||||| ||| | ||||| || || || | || || || |||| ||||| || ||||| Sbjct 1178778 GTAGACGTTCGAAGTGTACGGCTCGAACGACTCGTTGTTGCCCAGAATTTGGGCCGTGGA 1178719 Query 110767 GGCTGTTGGCATTGGTGCCATCAAAAGACTGTTACGAAGACCCTTCTCCTTGATGCGTTC 110826 ||| || ||||| ||||||| || || || || | ||| | || || ||| Sbjct 1178718 GGCGGTCGGCATCGGTGCCAGCAGGAGCGAATTCCGGATACCATGCTTGGCAATCTTTTC 1178659 Query 110827 CTTGAGAACATCCCAGT--CGTAGTTGAGCTTGGTTTCACCTTCCCACATGTCAAACTGA 110884 ||| || | |||||| | || | | |||| || || |||||||||| |||| Sbjct 1178658 CTTCAGCTCGGCCCAGTTCCACAGGTCCG-TTGGGGTCTTCT-CCCACATGTCGTACTGC 1178601 Query 110885 AGCACCCCTTGGGACGCGGGAGAACCCTCAAAGGTTTCATAGGAACCTTGGGCTTCAGCC 110944 || | || | | | | ||| | ||||| | ||||| || | ||| | | | ||| Sbjct 1178600 AGGATTCCCTTGCTCACCGGACAGCCCTCGTACGTTTCGTACGGACCGTCGCGGGCGGCC 1178541 Query 110945 AATTCACAGCTCGCCTCCAGGGATGCGTGATACATGGTTTCAAAGATACGAGCATTCATC 111004 || |||||||| |||||||| | | | || ||||| |||||||| | |||| | Sbjct 1178540 AACTCACAGCTAGCCTCCAGAGCGCCATAGTAGATGGTCTCAAAGATCTGCTGGTTCAGC 1178481 Query 111005 TCCTTGGCTTCATCTGAATCAAATGCGTAGCGGCACAAAATAAATACATCCGCGAGACCT 111064 | | ||||| || || | | | ||| | ||| || |||| || | || Sbjct 1178480 TTTTGTGCTTCCTCACTTTCGTACGGATGGCGCATGAGAATGAACGCATCGGCCATTCCC 1178421 Query 111065 TGAACACCCAAACCAATAGGTCTGTGTCGCATATTAGACT--TTCGCGCAGTCTCAACGG 111122 || || || | ||| ||||||| ||| ||||| || || ||||| | || ||| Sbjct 1178420 TGCACGCCGATACCGATAGGTCGGTGGCGCATGTTGGAACGCTTCGC-CTCCGGCACCGG 1178362 Query 111123 GATAAAAATTTCTGTCAATGACTCGGTTTAGATTTTTGGTAACAATCTTTGTGATTTCAT 111182 | || | || |||| |||| | ||| || || || || ||||| | || || | Sbjct 1178361 G-TAGTAGTTGATGTCGATGATTTTGTTCAGGTTGCGCGTGACGATCTTGGCGACCTCCT 1178303 Query 111183 GAAGTTTTTCATAATCAAAAGTGCGAGTCTCTTCATTGACATACTTTGGAAGGGCGATTG 111242 || || | | || | |||||| || | ||| || | || || || | Sbjct 1178302 TCAGCTTCACGAAGTCGTACGTGCGA---TCCGGCCTCACAAACATGTTCAGCGCAATCG 1178246 Query 111243 ATGCCAAATTGCAAACAGCCGTCTCATCCTTATCTGTGTACTCTAAAATTTCTGTACATA 111302 | |||| |||||| || || | || ||||| | |||||| | || || || || | Sbjct 1178245 ACGCCAGATTGCACACCGCAATTTCGTCCTTCGACGAGTACTCGACGATCTCCGTGCACA 1178186 Query 111303 AGTTGGAACTCTTAATCGTCCCCAAATTCTTTTGGTTACTCTTCTTGTTGCACGCATCCT 111362 ||| || | ||| ||||| |||| |||| ||||| |||||| |||||||||||||| Sbjct 1178185 GGTTCGAGCACTTGATCGTGCCCACGTTCTGCTGGTTGCTCTTCCGGTTGCACGCATCCT 1178126 Query 111363 TGTAGAGCATGTAGGGCGTCCCCGTCTCCGTCTGTGATTTGAGAATAGCCTTCCAAACAT 111422 ||||||||||||| ||| |||||||| ||| || | || || || ||| | || Sbjct 1178125 TGTAGAGCATGTACGGCACGCCCGTCTCGACCTGCGACTCGATGATCGCGAACCACAGAT 1178066 Query 111423 CGGCGGCTGGTACAATGGC--GTTGGCCCGTCCCTCCGCCTCGTACTTTGTGTAGAGGGC 111480 | | || | || || | || ||| || ||| |||||| ||||| || Sbjct 1178065 C--CTGCGCCTTCACCTGCCGGATGAACCGACCTTCCTTCTCGTAGCCCGTGTACAGCCG 1178008 Query 111481 TTCAAACTCCTCACCCACCGCGTCGGAGAGACCTGGTGCCTTGTCTGGACAGAAAAGAGA 111540 |||||||| || ||| || || || || || || | || ||||| | ||| Sbjct 1178007 CTCAAACTCTTCGCCCCACGACTCCGACAGCCCGGGGCAGTCGTGCGGACACATAAGGCT 1177948 Query 111541 CCATTGACCACCTT--CCTCAACCCGCTTCATGAAAAGGTCTGGAATCCACAG 111591 ||| | | || |||| |||||||||||||| || || || | |||||| Sbjct 1177947 CCA--CATTTCGTTCGCCTCCACCCGCTTCATGAACAGATCCGGCACCCACAG 1177897 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 627956698963200