Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Anopheles_20sinensis_20[genbank_20GCA_5F000441895.2_202014-07-14] 9,592 sequences; 220,777,669 total letters Query= NC_028092.1 Length=193301 Score E Sequences producing significant alignments: (Bits) Value seq9254 129 7e-25 seq9207 120 4e-22 seq9243 100 4e-16 seq9217 96.9 4e-15 >seq9254 Length=4138565 Score = 129 bits (142), Expect = 7e-25 Identities = 280/412 (68%), Gaps = 8/412 (2%) Strand=Plus/Minus Query 11802 TATCAAGCATCTTCCTCGGAGATGTTTGGTAAAGTTAGGGAATCCCCACAAAATGAGGAG 11861 || || ||||| | |||||| | | || || || |||| | ||||| ||||| | Sbjct 2756672 TACCAGGCATCCACTTCGGAGCTTTACGGCAAGGTGGTGGAAACGCCACAGAATGAAAAA 2756613 Query 11862 ACGCCCTTCTATCCACGATCCGTCTATGGCGTCT-CAAAGGT-TGCGGCACATTGGCTCG 11919 || ||||||||||| || || || | | | | | ||| | | |||| | ||| | | Sbjct 2756612 ACACCCTTCTATCCGCGTTCGCCGTACG-CTTGTGCCAAGATGTACGGCT-ACTGGATTG 2756555 Query 11920 TGAAGAATTACCGAGAATCCTATGGTCTCTTTGCGTGCTCTGGTATTCTCTTCAACCACG 11979 ||| |||||||| ||| | || | | ||||| ||| ||| ||||| || ||||||| Sbjct 2756554 TGATAAATTACCGCGAAGCGTACGACATGTTTGCCTGCAATGGCATTCTTTTTAACCACG 2756495 Query 11980 AGTCACCCCGTCGTGGCCCGGATTTCGTGACAAAGAAGATCACC--GATGGTATCAAACA 12037 |||| || || || || | |||| || || ||||| ||| | || | || Sbjct 2756494 AGTCTCCGCGGCGGGGAGAGAATTTTGTCACCCGCAAGATAACCCGGTCAGTGGCGAA-- 2756437 Query 12038 AATCGTGGCGGGTGAGAGGGAGTTCATTGAATTGGGGAACCTCAACGCCGAGAGGGACTG 12097 |||| | || || ||||| | | || |||| || || || || || | ||||| Sbjct 2756436 AATCTCGCTTGGCCAGCAGGAGTGCTTGGAGCTGGGCAATCTTGACTCCAAGCGTGACTG 2756377 Query 12098 GGGACATGCCAAGGACTATGTTGAAGCCATGTGGCTCGTACTTCAACAAGAAGAGGCGGA 12157 ||| |||||||| ||||| || || ||||||||||| | | || || || | |||| Sbjct 2756376 GGGGCATGCCAAAGACTACGTGGAGGCCATGTGGCTAATGATGCAGCAGGACAAACCGGA 2756317 Query 12158 CGAATATGTCGTCGCGACGGGGGAGACACACTCCGTCAGGGAGTTCGTTGAG 12209 || | |||| |||| || |||||||| ||||| || ||||||| || ||| Sbjct 2756316 AGATTTTGTCATCGCCACTGGGGAGACGCACTCGGTGCGGGAGTTTGTGGAG 2756265 >seq9207 Length=1443628 Score = 120 bits (132), Expect = 4e-22 Identities = 998/1602 (62%), Gaps = 34/1602 (2%) Strand=Plus/Minus Query 117837 CGGAGGTAGTACATCCCCGTCTTGAGCCCCTGCTTCCAGGCATACATATGCATTGAGGAC 117896 || || |||||||| |||||||| || ||| ||||||| | || | || || || | | Sbjct 1179122 CGCAGATAGTACATGCCCGTCTTCAGGCCCATCTTCCAGCCGTAGAAGTGAATCGACGTC 1179063 Query 117897 AACTTGGAGAGGGTTGGACTTTCCATGAAGAGGTTCATACTTTGGGATTGATCGATGAAG 117956 | |||| | | | || ||| | | ||| | ||||| ||||||||||| Sbjct 1179062 AGCTTGCCGTAGTTCGGTTCGGCCACGTGAATGTTGAACGACTGGGACTGATCGATGAAC 1179003 Query 117957 CGTCCCCGATCCGCCGCCATATCAAT-CACATCCTTCATCTTGATTTCCCACACAGTCCT 118015 ||||| ||||| ||||| | || ||| | |||| | || |||||||| ||| | Sbjct 1179002 GCACCCCGGTCCGCGGCCATTTTGATGCACGTT-TTCACCGATATCTCCCACACCGTCTT 1178944 Query 118016 GTAGAGGTTCTTAATATCATCTGGGATATCCACGATATTTTGGATGGATCCACCCGCCTT 118075 ||| |||| || | | || || ||| |||| | || ||| | ||| | Sbjct 1178943 GTACAGGTCGCGGATGTGCTGCGGAATTTCCTCGATCC----GCTGTATCGAACCGTTGT 1178888 Query 118076 GACCATGA----GATCCTTCATATCCTTTGACCAGAGACCAATCTTTTTGAGATCCTCCA 118131 | || | | | ||||||||| | ||| || || | | | ||||||| || Sbjct 1178887 GCGCAAGGATTTGGTTCTTCATATCGTCATCCCACAGGCCGAGTTCGGTCAGATCCTGCA 1178828 Query 118132 CGAGATGCTTATTGACAACAACAAACTCACCCGCGAGGGTGCGTCTCAGATAGATATTGG 118191 ||||| | ||||| || ||||| |||| || ||| | |||| || | Sbjct 1178827 GCAGATGGTGGTTGACCACCTGGAACTCGCCCGACAGCACGCGCCGATTGTAGACGTTCG 1178768 Query 118192 TCGTGTATGGCTCAAAGCACTCATTGTTACCCAAGATTTGGGCTGTGGAGGCTGTGGGCA 118251 ||||| ||||| || |||| ||||| |||| |||||||| |||||||| || |||| Sbjct 1178767 AAGTGTACGGCTCGAACGACTCGTTGTTGCCCAGAATTTGGGCCGTGGAGGCGGTCGGCA 1178708 Query 118252 TGGGTGCCATGAGAAGGCTGTTACGGAGACCCTTTTCCCTAATGCGTTCCTTGAGAGCGT 118311 | ||||||| || || || |||| ||| | | ||| |||||| || || Sbjct 1178707 TCGGTGCCAGCAGGAGCGAATTCCGGATACCATGCTTGGCAATCTTTTCCTTCAGCTCGG 1178648 Query 118312 CCCAGTCGTAGTTGAGCTTTGTCTCCCCCTGCCACATATCAAACTGGAGGATACCTTGGG 118371 |||||| | | | ||| | || |||||| || |||| ||||| || | | Sbjct 1178647 CCCAGTTCCACAGGTCCGTTGGGGTCTTCTCCCACATGTCGTACTGCAGGATTCCCTTGC 1178588 Query 118372 ACGCTGGCGATCCCTCAAATGTCTCATATGGGCCCTCAACCTCCGCCAATTCGGAGCTCG 118431 | | || | ||||| | || || || || || || | ||||| || |||| | Sbjct 1178587 TCACCGGACAGCCCTCGTACGTTTCGTACGGACCGTCGCGGGCGGCCAACTCACAGCTAG 1178528 Query 118432 CCTCGAGGGCTGCGTGATACATTGTTTCAAAAATGCGAGCATTCATTGCCTTGG--CCTC 118489 |||| || || | | || || || ||||| || | |||| || || | | || Sbjct 1178527 CCTCCAGAGCGCCATAGTAGATGGTCTCAAAGATCTGCTGGTTCA--GCTTTTGTGCTTC 1178470 Query 118490 GTCGGAATCAAACGCGAGTCGGCACAAAATAAATACATCCGCGAGACCTTGGACACCGAG 118549 || || ||| | || | ||| || |||| || | || || || |||| Sbjct 1178469 CTCACTTTCGTACGGATGGCGCATGAGAATGAACGCATCGGCCATTCCCTGCACGCCGAT 1178410 Query 118550 GCCAATTGGGCGATGTCTCATATTAGA---CTTCCGAGCGGTCTCCACGGGATAAAAATT 118606 || || || || || | ||| || || |||| || | ||| || || | || Sbjct 1178409 ACCGATAGGTCGGTGGCGCATGTTGGAACGCTTC---GCCTCCGGCACCGGGTAGTAGTT 1178353 Query 118607 CCTATCGATAACCCTATTTAGATTTTTGGTGACAACCTTTGTGATTTCATGAAGCTTTTC 118666 | ||||| | | || || || ||||| | ||| | || || | ||||| | Sbjct 1178352 GATGTCGATGATTTTGTTCAGGTTGCGCGTGACGATCTTGGCGACCTCCTTCAGCTTCAC 1178293 Query 118667 GTAATCAAAACTGCGAGTCTCTTCATTGACATACTTAGGAAGGGCGATTGACGCCAGATT 118726 | | || | ||||| || | ||| || | || || || ||||||||||| Sbjct 1178292 GAAGTCGTACGTGCGA---TCCGGCCTCACAAACATGTTCAGCGCAATCGACGCCAGATT 1178236 Query 118727 ACACACAGAGGTCTCATCCTTATCAGTGTACTCTATAATTTCCGTGCACAAGTTTGAACT 118786 ||||| | | || ||||| | |||||| | || |||||||||| ||| || | Sbjct 1178235 GCACACCGCAATTTCGTCCTTCGACGAGTACTCGACGATCTCCGTGCACAGGTTCGAGCA 1178176 Query 118787 CTTAATGGTGCCCAAGTTCTTTTGATTTGACTTTGTGTTACACGCATCCTTGTAAAGCAT 118846 ||| || ||||||| ||||| || || ||| ||| |||||||||||||| ||||| Sbjct 1178175 CTTGATCGTGCCCACGTTCTGCTGGTTGCTCTTCCGGTTGCACGCATCCTTGTAGAGCAT 1178116 Query 118847 GTATGGCGTCCCCGTCTCCGTTTGGGACTTGAGAATAGCCTTCCAGACATCGGCAGCTGG 118906 ||| ||| |||||||| || |||| || || || ||| | ||| || Sbjct 1178115 GTACGGCACGCCCGTCTCGACCTGCGACTCGATGATCGCGAACCACAGATCCTGCGCCTT 1178056 Query 118907 CACAGTGGC-GTTGGCTCGCCCCTCTTCCTCGTACTTTGTGTAGAGGGCTTCAAACTCTT 118965 ||| || | | || || || || | |||||| ||||| || |||||||||| Sbjct 1178055 CAC-CTGCCGGATGAACCGACCTTCCTTCTCGTAGCCCGTGTACAGCCGCTCAAACTCTT 1177997 Query 118966 CACCCACGGCCTCTGAGAGCCCTGGTGCCTTATCTGGGCAGAAGAGAGACCATTGACCAC 119025 | ||| | ||| || ||||| || | | || || | || ||| | Sbjct 1177996 CGCCCCACGACTCCGACAGCCCGGGGCAGTCGTGCGGACACATAAGGCTCCACATTTCGT 1177937 Query 119026 CCTCCTCAACCCGCTTCATGAAGAGGTCTGGGATCCAGAGCGCCGAGAAGAGATCCCG-A 119084 | |||| |||||||||||||| || || || | ||| ||||| |||| | || || Sbjct 1177936 TCGCCTCCACCCGCTTCATGAACAGATCCGGCACCCACAGCGCGTAGAACATGTCACGCG 1177877 Query 119085 CAGCGAGCTTCTTCATCCCCCTGATTGAGACGCAACTCCAAAAAGTCCATGATATCCGCG 119144 || || || || | | || || || || || | ||| || | | ||| | Sbjct 1177876 CACGGACCTCCTCCTTGCCAGTG-TTTTTCTTCAGATCGAGAAACTCAAACACATCGCCA 1177818 Query 119145 TGCCACGGTTCCAGGTACACCGCGATTGACCCCTTACG---ACGACCAGCCTGGTTTACA 119201 |||||||| || ||||| | |||| | || ||| || |||||| ||| Sbjct 1177817 TGCCACGGCTCGAGGTAGATGGCGAACGCACCGGGACGCTTGTTGCCGCCCTGGTCCACA 1177758 Query 119202 TACCTCGCAGTGGCGTTAAATACACGAAGCATTGGAATGATACCATCGGATTGGCCATTT 119261 |||| || ||| ||| | ||||| ||||| |||| | || | ||| || || Sbjct 1177757 TACCGGGCCGTGTTGTTGTAGACACGCAGCATCGGAACCAACCCGTTGGAGATACCGTTC 1177698 Query 119262 GTCCCCCGAA--TACGAGACTTATTGGCTCTGACATCGTGGATGTGCATACCAATACCCC 119319 || ||| || |||| || || || | || ||| | || || |||||| || | Sbjct 1177697 GTGCCCGCAATGTACG-TAC-CCTTCGCCCGGATGCAGTGCACGTTCAGACCAATGCCTC 1177640 Query 119320 CTGCCCACTTTGAGATTTGCGCGCACTCCGTGAGACTGCCGTAGATCCCATCGATCGAGT 119379 | || |||| ||||| | ||||||| | | || || |||| || || ||||| || Sbjct 1177639 CGGCGGACTTGGAGATCAGTGCGCACTGCTTCAGCGTGTCGTAAATTCCCTCGATACTGT 1177580 Query 119380 CACCCTTATTTGCGATGAGGAAGCAGCTCGACATTTGAGGCC 119421 | || | | | ||| |||||| ||||| ||| |||| Sbjct 1177579 CGTCCGACATCGTTAGGAGAAAGCAGGACGACAGTTGGGGCC 1177538 >seq9243 Length=2754563 Score = 100 bits (110), Expect = 4e-16 Identities = 283/423 (67%), Gaps = 24/423 (6%) Strand=Plus/Plus Query 14056 GATCTTACGATCAAAGCGACCTGGGCGGAGGAGGGCGTCGTCAAGGATATCAATGCGGTT 14115 ||||| ||||| |||||||| ||||| ||||| || | ||| ||||| || | ||||| Sbjct 2616413 GATCTGCCGATCGAAGCGACCGGGGCGAAGGAGCGCCTTGTCTAGGATGTCCACCCGGTT 2616472 Query 14116 CGTCGCCGCGATGACAACGATGCCCGTC-TCGTTATCAAAGCCATCCATCTCAGTCAAG- 14173 ||| ||||| | || || | |||| |||| || || || |||||||| | | || Sbjct 2616473 CGTTGCCGCCAGCACGACCACATTCGTCGTCGT-ATTGAATCCGTCCATCTC-GACGAGC 2616530 Query 14174 AGTTGATTGATGGTTTGTTCGCGTTCATCATTCGCAGGCATACCACCC--GCACT----G 14227 || || |||| || |||| | | | ||| || ||||| || || | Sbjct 2616531 AGCTGGTTGAGCGT--GTTCTCTTGC-----TCGGAGTGT--CCACCGAAGCTCTTCCCG 2616581 Query 14228 CGTTGCTT---ACCGACGGCGTCAATTTCATCGATGAAAACGATACATGGTTGATTTTCA 14284 | |||| ||| |||||||| |||||||||||||| | || || ||| ||||| Sbjct 2616582 CCACGCTTTCGACCTACGGCGTCGATTTCATCGATGAACAAAATGCACGGTGCATTTTTG 2616641 Query 14285 CGGGCAACTTCAAAGATATCTCGCACTCTCTTGGCACCGACACCCACAAACATCTCCACA 14344 || || | | || ||||| ||||| | | | ||||||||| |||||||| |||| | Sbjct 2616642 CGCGCCATGGCGAACATATCGCGCACACGCGACGGACCGACACCGACAAACATTTCCAAA 2616701 Query 14345 AAATTGGCGGCGGA-ACATTGGATGAAGGGGACGTTAGATTCACCCGCGATGGCTCGGGC 14403 || | | | || || | |||||| || ||||| | ||| || ||| | || || Sbjct 2616702 AACTCCGATCCCGACACGGT-GATGAACGGTACGTTCGCTTCCCCAGCGGTCGCCTTCGC 2616760 Query 14404 GAGGAGGGTCTTCCCCGTCCCTGGTTTCCCTGCGAGAAGGGCACCACGTGGGATCCTGGC 14463 ||| || || || || || || ||| || | || | |||||| ||||| | || Sbjct 2616761 GAGAAGCGTTTTTCCGGTACCGGGTGGGCCAGTCAGCATGGCACCTTTGGGGATTTTCGC 2616820 Query 14464 ACC 14466 ||| Sbjct 2616821 ACC 2616823 >seq9217 Length=1236993 Score = 96.9 bits (106), Expect = 4e-15 Identities = 287/432 (66%), Gaps = 12/432 (3%) Strand=Plus/Plus Query 178885 CCCGTGCCGATGCCTTCGGTTCCGTTCACGAGAACCATTGGAAGCGTTGGCATATAGAAG 178944 || || ||||| || |||| |||||||| || | ||| |||| | |||| ||| || Sbjct 55686 CCGGTACCGATACCGTCGGCACCGTTCACCAGTAGCATCGGAATGATGGGCAGATACCAG 55745 Query 178945 TCTGGTTCAATCGCAC-GCCCGTCATCATCCAAATAATTGAGCACGGGGTCGTCCCTCGG 179003 ||||||| || || | | ||| || | | || ||||| || |||||| ||| Sbjct 55746 ACTGGTTCGAT-GCGCTGATTGTCCTCGTACTGGTACGCGAGCAGCGGATCGTCCAGCGG 55804 Query 179004 ATCAAAGATTTTACGAG-CATCCCTGGTGAGTTTTGTGAAGATGTACCTCGTTTGAGACG 179062 || ||||| || | || | | || | ||||||||||| | || || || Sbjct 55805 ATGGAAGATGCAGCGCGTCAGGGCCGAC-AGCATGGTGAAGATGTAACGCGGGCTAG-CG 55862 Query 179063 CA-TCTTTGCCACCCATGAGACGCGTCCCAAATTGACCACATGGCTCAAGGAGATTGATA 179121 | || |||||||| | | ||||| || || ||||| | || | || |||||||| Sbjct 55863 CTGTCCTTGCCACCGGTCAACCGCGTACCGAACTGACCGCCCGGGTACAGCAGATTGATG 55922 Query 179122 TTGTTTGAACCCATGTAGTCATTGGCCAACTTGACAATCGTATCCGCG-AGGGAGACT-- 179178 || || || | ||||| | ||||| || || ||||| || | || | |||| Sbjct 55923 TTATTACTGCCGACGTAGTTCTGCGCCAAGTTAACGATCGT---CGAGCAGAGCGACTGC 55979 Query 179179 TCACCGTGATGGTAAGCCGACTTGTCCGCCACATATGCCGCCAACTGCGCCACCTTCATC 179238 || ||||||||||| || ||| | |||||||| | | |||| ||| |||||||||| | Sbjct 55980 TCGCCGTGATGGTATGCGGACATTTCCGCCACCGAACCGGCCAGCTGGGCCACCTTCACC 56039 Query 179239 TCATCCTTGAGGTTCTTGTGGAAGCACGCATACATCACCTTTCTTTGTGAAGGCTTGAGG 179298 || |||| ||| | |||||| | ||| |||||| | || ||||| || Sbjct 56040 TCGCGCTTGTCGTTACGCTTGAAGCAGGTGAACAGCACCTTCCGCTGGCCCGGCTTCAGC 56099 Query 179299 CCGTCGGCCATG 179310 |||||| |||| Sbjct 56100 CCGTCGAGCATG 56111 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 618361049619520