Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Anopheles_20sinensis_20[genbank_20GCA_5F000441895.2_202014-07-14] 9,592 sequences; 220,777,669 total letters Query= NC_028108.1 Length=171454 Score E Sequences producing significant alignments: (Bits) Value seq9207 457 1e-123 seq9254 87.8 2e-12 >seq9207 Length=1443628 Score = 457 bits (506), Expect = 1e-123 Identities = 1185/1765 (67%), Gaps = 72/1765 (4%) Strand=Plus/Minus Query 78190 GTTCGCAAATAGTACATGCCCGTCTTGAGACCCTTCTTCCATCCGTACAGGTGCATACTC 78249 || |||| |||||||||||||||||| || ||| ||||||| ||||| | ||| || | Sbjct 1179125 GTGCGCAGATAGTACATGCCCGTCTTCAGGCCCATCTTCCAGCCGTAGAAGTGAATCGAC 1179066 Query 78250 GACAGCTTGGCCAGACTCGGGTTCT-CCATGAAGATGTTGAGCGACTGGGACTGGTCGAT 78308 | ||||||| || | | ||||| ||| | ||||||| |||||||||||| ||||| Sbjct 1179065 GTCAGCTTG-CCGTAGTTCGGTTCGGCCACGTGAATGTTGAACGACTGGGACTGATCGAT 1179007 Query 78309 GTACGCACCGCGGTCGGCCGCCATGTCGATGACCGACTTTTGCGGAATCTCCCAGATGGT 78368 | ||||||| ||||| || ||||| | |||| || || || |||||||| | || Sbjct 1179006 GAACGCACCCCGGTCCGCGGCCATTTTGATGCACGTTTTCACCGATATCTCCCACACCGT 1178947 Query 78369 CCGGTAAATGGCCTTCAGCTCTTCCTGGATGTCC---AGCGCTTGTACGCTCCCACCGGC 78425 | ||| | | | | | | | | || ||| | | |||| || |||| Sbjct 1178946 CTTGTACAGGTCGCGGATGTGCTGCGGAATTTCCTCGATCCGCTGTA---TCGAACCGTT 1178890 Query 78426 TCGCACAA---TTTCATTCTTAATTTGAGGGTTCCAGCGATTGATCTTCTGA-AGATCCC 78481 || ||| ||| ||||| || | | ||| | || ||| | |||||| Sbjct 1178889 GTGCGCAAGGATTTGGTTCTTCATATCGTCATCCCACAGGCCGAG-TTCGGTCAGATCCT 1178831 Query 78482 GGACCAGGTGCCGGTTAATCATGACGAACTCGCCGGCCAGGGTCCGGCGCAGGTAGATGT 78541 | | ||| || |||| | || ||||||||| | ||| || || ||||| || Sbjct 1178830 GCAGCAGATGGTGGTTGACCACCTGGAACTCGCCCGACAGCACGCGCCGATTGTAGACGT 1178771 Query 78542 TGGTCGTGTACGGCTCGAAAGCCTCGTTGTTCCCCATGATCTGGGCGGTCGAGGCGGTCG 78601 | | |||||||||||||| | ||||||||| |||| || ||||| || |||||||||| Sbjct 1178770 TCGAAGTGTACGGCTCGAACGACTCGTTGTTGCCCAGAATTTGGGCCGTGGAGGCGGTCG 1178711 Query 78602 GCATGGGTGCGACCAGTAGAGAATTCCGAAGACCATGCGTCTTGATCTCGACCTTTAG-- 78659 |||| ||||| | ||| || |||||||| | ||||||| | |||| |||| || Sbjct 1178710 GCATCGGTGCCAGCAGGAGCGAATTCCGGATACCATGCTTGGCAATCTTTTCCTTCAGCT 1178651 Query 78660 --GCC--GTCCCAAAATTCATTCGCCGCGATCCCCCACATGTCCGGTTGAAGGATACCCT 78715 ||| || ||| | || | | | || |||||||||| || ||||| |||| Sbjct 1178650 CGGCCCAGTTCCACAGGTCCGTTGGGGTCTTCTCCCACATGTCGTACTGCAGGATTCCCT 1178591 Query 78716 CGGACGCCGGCGACCCCTTGAACGTCTCGTAAGATCCCTCCTCCTTGGCGAGTTCGCAT- 78774 | | |||| | |||| | |||| ||||| | || || ||| | || || Sbjct 1178590 TGCTCACCGGACAGCCCTCGTACGTTTCGTACGGACCGTCGCGGGCGGCCAACTCACAGC 1178531 Query 78775 --GACTCGAGCAGGGCCGCGTGGTACACAGCCTCGAAGATGCCCTTGTTGAGCTCGCGCG 78832 | ||| || || ||| | ||| | | ||| ||||| || ||| |||| | | Sbjct 1178530 TAGCCTCCAG-AGCGCCA--TAGTAGATGGTCTCAAAGATCTGCTGGTTCAGCTTTTGTG 1178474 Query 78833 CCTTGGTCTCGT-CGAACGAAAGGCCGAGCATCATGAAGACATCGGCCAGGCCCTGGACG 78891 | || || | | || ||| | ||| | | ||||| ||||||||| ||||| ||| Sbjct 1178473 C-TTCCTCACTTTCGTACGGATGGCGCATGAGAATGAACGCATCGGCCATTCCCTGCACG 1178415 Query 78892 CCGATAGCGATCGGTCGGTGGCGCATGTTG---CTCTTTCGGGCCGCCTCGGTC---GGG 78945 |||||| |||| |||||||||||||||||| | ||| |||||| | | ||| Sbjct 1178414 CCGATACCGATAGGTCGGTGGCGCATGTTGGAACGCTT------CGCCTCCGGCACCGGG 1178361 Query 78946 TAAAAGTTCCGATCGATGACGCGGTTCAGGTTACGCGTGACGACCCGAGTCACCTCGTAC 79005 || |||| ||||||| ||||||||| |||||||||| | | ||||| | | Sbjct 1178360 TAGTAGTTGATGTCGATGATTTTGTTCAGGTTGCGCGTGACGATCTTGGCGACCTCCTTC 1178301 Query 79006 AATTTGGCGAAATCAAAA-TGATTTCCTT--TGATGAAAGTCGGTAG-GCACAGCGATGC 79061 | || |||| || | || ||| | | || | || ||| | ||| || Sbjct 1178300 AGCTTCACGAAGTCGTACGTGCGATCCGGCCTCACAAACATGTTCAGCGCA-ATCGACGC 1178242 Query 79062 CAGGTTGCACACGGCCGTCTCGTCCG--GGCTAGAAACCTCGATGATTTCTGTGCACAAA 79119 ||| |||||||| || | |||||| | | || | ||||| ||| || ||||||| Sbjct 1178241 CAGATTGCACACCGCAATTTCGTCCTTCGACGAGTA--CTCGACGATCTCCGTGCACAGG 1178184 Query 79120 TTAGACGACTTGATGGTGCCGATGTTCTTCTGGTTGCTCTTCTCGTTACAGGCGTCCTTG 79179 || || ||||||| ||||| | ||||| ||||||||||||| ||| || || |||||| Sbjct 1178183 TTCGAGCACTTGATCGTGCCCACGTTCTGCTGGTTGCTCTTCCGGTTGCACGCATCCTTG 1178124 Query 79180 TAGCACATGTACGGCGTCCCGGTCTCAACCTGACTCTTGA-GAACGCCGTCCCAGATGTC 79238 ||| |||||||||| || ||||| ||||| || || || ||| | ||| | || Sbjct 1178123 TAGAGCATGTACGGCACGCCCGTCTCGACCTGCGACTCGATGATCGC-GAACCACAGATC 1178065 Query 79239 CCGGGCCCGGACAACCTTCTTGTACCGACCCTGTGCGACGTACGTCCG-GTACAACTCGT 79297 | | ||| || | || ||||||| | |||| | ||| ||||| | || Sbjct 1178064 CTGCGCCTTCACCTGCCGGATGAACCGACCTTCCTTCTCGTA-GCCCGTGTACAGC-CGC 1178007 Query 79298 TGAAAGCCT---CCCCATAGACATCGGGCAGGCCCGGGCACTCGTGCGGGCACATCAGGT 79354 | ||| || ||||| ||| || | ||| || ||||| |||||||| ||||| ||| Sbjct 1178006 TCAAACTCTTCGCCCCAC-GAC-TCCGACAGCCCGGGGCAGTCGTGCGGACACATAAGGC 1177949 Query 79355 GCCAGTCCTCGTCCTTCTCAACCTTCTCCATGAAGAGGTCCGGGATCCACAGGGCCGTGA 79414 ||| |||| | ||| ||| || |||||| || ||||| | |||||| || || Sbjct 1177948 TCCACATTTCGTTCGCCTCCACCCGCTTCATGAACAGATCCGGCACCCACAGCGCGTAGA 1177889 Query 79415 AGAGGTCGCGGCAACGCATCTCCTCGTCGCCCTGGTTCAGACGCAGCTCGAGAAAGTCCA 79474 | | ||| || ||| | |||||| | ||| ||| ||| |||||||| || | Sbjct 1177888 ACATGTCACGCGCACGGACCTCCTCCTTGCCAGTGTTTTTCTTCAGATCGAGAAACTCAA 1177829 Query 79475 TGATGTCGGCGTGCCACGGCTCCAGATAGATGGCGAACGAACCCTTGCGCTTGCCGCCGC 79534 | ||| | ||||||||||| || ||||||||||||| ||| |||||| ||||| Sbjct 1177828 ACACATCGCCATGCCACGGCTCGAGGTAGATGGCGAACGCACCGGGACGCTTGTTGCCGC 1177769 Query 79535 CCTGGTTGACGTACCGGGCCGTGTTGTTGAAAACTCGGAGCATGGGCACGATGCCGTCGG 79594 |||||| || |||||||||||||||||| | || || ||||| || || | |||| || Sbjct 1177768 CCTGGTCCACATACCGGGCCGTGTTGTTGTAGACACGCAGCATCGGAACCAACCCGTTGG 1177709 Query 79595 CGACGCCGTTCGTCCCGTTGATTCGTGTACCGCTCGCCCGAATGTTCGAGCA-GTGGATT 79653 || |||||||| || || ||||| ||||||| ||| | ||| || | Sbjct 1177708 AGATACCGTTCGTGCCCGCAATGTACGTACCCTTCGCCCGGATG-CAGTGCACGTTCAGA 1177650 Query 79654 CCGATGCCCCCGGACCACTTGGAGATGTGCGCGCACTCCTTGAGCGTCTCGTAGATGCCC 79713 || ||||| |||| |||||||||| | ||||||| ||| ||||| ||||| || ||| Sbjct 1177649 CCAATGCCTCCGGCGGACTTGGAGATCAGTGCGCACTGCTTCAGCGTGTCGTAAATTCCC 1177590 Query 79714 TCGATCGAGTCGTCCTTCATAGCGACCAGGAAGCAGCTCGACATCTGTGGGTTGTTCGTA 79773 ||||| ||||||| ||| | | || |||||| ||||| || || | ||| Sbjct 1177589 TCGATACTGTCGTCCGACATCGTTAGGAGAAAGCAGGACGACAGTTGGGGCCGCTGCGTG 1177530 Query 79774 CCGGCGTTGAAGAGGGTCGGCGTCGCGTGCGTGAAGAACTTTTGGCTC----ATCAGATC 79829 | || || | |||||||| |||||||| ||| | | |||| | || || Sbjct 1177529 GCCGCCGCAAACATGGTCGGCGAGGCGTGCGTAAAG----TATCGCTCCGAAAGCAAATT 1177474 Query 79830 GTACGTCTC-CTTGACGCGCGGGAGGTCGTCGCCGTGGATGCCGACCGCGACGCGCATGA 79888 |||||| || ||| ||| || ||| ||||||||||| |||| || |||||||| | Sbjct 1177473 GTACGTTTCGATTGCCGC-ATCGATGTCCTCGCCGTGGATCCCGATGGCAACGCGCATCA 1177415 Query 79889 AGAGGTACTG-GGGCGTCTCGCCGA 79912 | || ||| || ||| ||| ||| Sbjct 1177414 GCATGTGCTGCGGTCGT-TCGACGA 1177391 Score = 343 bits (380), Expect = 2e-89 Identities = 1086/1651 (66%), Gaps = 48/1651 (3%) Strand=Plus/Plus Query 19195 CTTCACGCACGCGACGCCGACCCTTTTCAACGCCGGTACGAACAACCCGCAGATGTCGAG 19254 ||| |||||||| |||||||| | || || | ||| | || || ||||| Sbjct 1177494 CTTTACGCACGCCTCGCCGACCATGTTTGCGGCGGCCACGCAGCGGCCCCAACTGTCGTC 1177553 Query 19255 CTGTTTCCTAGTGGCTATGAAGGATGACAGCATTGAGGGCATCTACGAGACGCTCAAGGA 19314 ||| || || | | ||| ||| ||||| || ||||| || ||||| ||||| ||| | Sbjct 1177554 CTGCTTTCTCCTAACGATGTCGGACGACAGTATCGAGGGAATTTACGACACGCTGAAGCA 1177613 Query 19315 GTGCGCGCACATCTCCAAGTGGTCCGGGGGTATCGGGATCCAC-TGCTCGAATATCCGGT 19373 |||||| | |||||||||| |||| || || || | || ||| | |||||| Sbjct 1177614 GTGCGCACTGATCTCCAAGTCCGCCGGAGGCATTGGTCTGAACGTGCACTGC-ATCCGGG 1177672 Query 19374 CGAGTGGTACACGAATCAATGGGACGAACGGAGTAGCCGACGGTATCGTCCCAATGCTCC 19433 ||| ||||| || || |||||||| | || |||| | || || ||||| | Sbjct 1177673 CGAAGGGTACGTACATTGCGGGCACGAACGGTATCTCCAACGGGTTGGTTCCGATGCTGC 1177732 Query 19434 GCGTCTTCAACAACACGGCCAGGTACGTCAACCAGGGGGGCGGCAAACGCAAGGGCTCGT 19493 | |||| ||||||||||||| |||| || ||||||| ||| ||| || || ||| Sbjct 1177733 GTGTCTACAACAACACGGCCCGGTATGTGGACCAGGGCGGCAACAAGCGTCCCGGTGCGT 1177792 Query 19494 TCGCCATCTACCTCGAGCCATGGCACGCGGACGTCATGGATTTCCTCGAACTGCGCCTGA 19553 ||||||||||||||||||| ||||| | || || | || || ||||| ||| | Sbjct 1177793 TCGCCATCTACCTCGAGCCGTGGCATGGCGATGTGTTTGAGTTTCTCGATCTGAAGAAAA 1177852 Query 19554 ACCAGGGTGACGAGGAGATGCGCTGTCGCGACCTCTTCACGGCCTTGTGGATTCCGGACC 19613 || || | |||||| | || || ||| | ||| || ||||| | ||||| | Sbjct 1177853 ACACTGGCAAGGAGGAGGTCCGTGCGCGTGACATGTTCTACGCGCTGTGGGTGCCGGATC 1177912 Query 19614 TATTCATGGAGAAGGTTGAGAAGGACGAAGAATGGCACCTGATGTGCCCGCACGAATGCC 19673 | |||||| || ||| ||| | ||||| ||| ||| ||||| |||||||| |||| Sbjct 1177913 TGTTCATGAAGCGGGTGGAGGCGAACGAAATGTGGAGCCTTATGTGTCCGCACGACTGCC 1177972 Query 19674 CTGGCCTACCCGACGTC-TACGGCGAGGCGTTCAATGAGTTGTAC-CGGACTTACGTAGC 19731 | || || | || ||| | ||||| | ||| | | ||||| ||| | |||| Sbjct 1177973 CCGGGCTGTCGGA-GTCGTGGGGCGAAGAGTTTGAGCGGCTGTACACGGGC-TACGAGAA 1178030 Query 19732 CCAGGGCCGGTTCAAGAAGGTGGTCCGGGCCCGGGACGTCTG-GGACCGCG-TCCTCAAA 19789 | || ||||||| | ||| ||| | ||| |||| || |||| || || | Sbjct 1178031 GGAAGGTCGGTTCATCCGGCAGGTGAAGGCGCAGGA--TCTGTGGTTCGCGATCATCGAG 1178088 Query 19790 AGCCAGGTCGAGACCGGCACACCGTACATGTGCTACAAGGACGCCGCGAACGCCAAGTCA 19849 ||||||||||| ||| ||||||||| ||||||||| || ||| ||| Sbjct 1178089 TCGCAGGTCGAGACGGGCGTGCCGTACATGCTCTACAAGGATGCGTGCAACCGGAAGAGC 1178148 Query 19850 AATCAGAAGAACATCGGCGCGATCAAGTCGTCCAACCTGTGTACTGAAATCATGGAGGTT 19909 || ||| ||||| | ||| ||||||||| || |||||||| || || ||| | ||| Sbjct 1178149 AACCAGCAGAACGTGGGCACGATCAAGTGCTCGAACCTGTGCACGGAGATCGTCGAGTAC 1178208 Query 19910 TCCAAGCCGGACGAGACTGCCGTGTGTAATCTGGCGTCCCTGTGC-CTGCCGACTTTCGT 19968 || | |||||| | ||| ||||| ||||||||||| | ||| ||| | || || Sbjct 1178209 TCGTCGAAGGACGAAATTGCGGTGTGCAATCTGGCGTCGAT-TGCGCTGAACATGTTTGT 1178267 Query 19969 CAAGGCC---TC-CTCCTTCGACTTTGCCAAATTGTACGAGGTGACCCGGGTCGTCACGC 20024 ||||| || | | | |||||| | || || | ||||| || | ||||||||| Sbjct 1178268 -GAGGCCGGATCGCACGTACGACTTCGTGAAGCTGAAGGAGGTCGCCAAGATCGTCACGC 1178326 Query 20025 GTAATCTGAATCGCGTCATCGATCGGAACTTTTACCC---GACCGAGGCGGCGCGCAAGT 20081 | || ||||| ||||||| |||| ||||| | | |||||| ||| | Sbjct 1178327 GCAACCTGAACAAAATCATCGACATCAACTACTACCCGGTGCCGGAGGCGAAGCG---TT 1178383 Query 20082 CGAATATGCGCCACCGGCCGATCGCGATCGGCGTCCAGGGCCTGGCCGACGTTTTCATGA 20141 | || ||||||||||| || |||| |||||||| ||||| ||||||| | ||||| Sbjct 1178384 CCAACATGCGCCACCGACCTATCGGTATCGGCGTGCAGGGAATGGCCGATGCGTTCATTC 1178443 Query 20142 TGCTCGGCCTCTCATTCGACGATCCCAAGGCGCGCGAGCTCAACAAGGGCATCTTCGAGG 20201 | | ||| | | ||| | | || | |||| ||| || ||||| ||| Sbjct 1178444 TCATGCGCCATCCGTACGAAAGTGAGGAAGCACAAAAGCTGAACCAGCAGATCTTTGAGA 1178503 Query 20202 CCGTGTACCACGCGGCCCTCCTGGAATC---GTGCGAACTCGCCAAAGAGGACGGCCCGT 20258 || | ||| | ||| || ||||| | || || | ||| ||||| |||| Sbjct 1178504 CCATCTACTA--TGGCGCT-CTGGAGGCTAGCTGTGAGTTGGCCGCCCGCGACGGTCCGT 1178560 Query 20259 ACGAGACGTTCAAGGGGTCGCCCGCGTCCGAGGGTATCCTCCAGCCGGACATGTGGGGCG 20318 |||| |||| | |||| | || | | | |||| ||||| ||| |||||||||| Sbjct 1178561 ACGAAACGTACGAGGGCTGTCCGGTGAGCAAGGGAATCCTGCAGTACGACATGTGGGAGA 1178620 Query 20319 TCACTGAGAATGAGTTTTGGA---GCGCC---CTCAAGGTTGAGAT---CAAGACCCACG 20369 || | || | |||| | ||| || |||| |||| |||| || | Sbjct 1178621 AGACCCCAACGGACCTGTGGAACTGGGCCGAGCTGAAGGAAAAGATTGCCAAG---CATG 1178677 Query 20370 GGCTTCGCAACTCGTTGCTCGTCGCGCCCATGCCGACCGCCTCGACCGCCCAGATCATGG 20429 | | || || ||| | || | || || |||||||||||||| || ||||| || ||| Sbjct 1178678 GTATCCGGAATTCGCTCCTGCTGGCACCGATGCCGACCGCCTCCACGGCCCAAATTCTGG 1178737 Query 20430 GGAACAACGAGGCTTTCGAGCCGTACACGACCAACATCTACTTGCGTCGTACACTGGCCG 20489 | ||||||||| | |||||||||||||| | ||| ||||| || || ||| | | Sbjct 1178738 GCAACAACGAGTCGTTCGAGCCGTACACTTCGAACGTCTACAATCGGCGCGTGCTGTCGG 1178797 Query 20490 GTGAGTTCGTCATGGTAAACAAGCACCTGGTCCGCGA-CTTGCAGAAGATCGATATGTGG 20548 | |||||| |||| ||| | || ||| | | || || | ||| ||| ||||| Sbjct 1178798 GCGAGTTCCAGGTGGTCAACCACCATCTGCTGCAGGATCTGACCGAA-CTCGGCCTGTGG 1178856 Query 20549 TCGCCCAAAATTAAGAATGAAATTGTCCGAGC-CGGCGGGAGCGTCCAG-GCAT--TGGA 20604 | | || ||||| |||| | | || | ||| | ||| | || ||| Sbjct 1178857 GATGACGATATGAAGAACCAAATCCT-TGCGCACAACGGTTCGATACAGCGGATCGAGGA 1178915 Query 20605 TATCCCCCAGAACCTCAAGGACATTTACAGGACCGTATGGGAAATCCCACAGAAGAGCAT 20664 || || ||| || || ||| | |||| ||| || ||||| || | ||| | Sbjct 1178916 AATTCCGCAGCACATCCGCGACCTGTACAAGACGGTGTGGGAGATATCGGTGAAAACGTG 1178975 Query 20665 CATCGACATGGCGGCCGATCGCGGCGCCTACATCGACCAGTCCCAGTCGCTCAATGTCTT 20724 |||| | ||||| || || || || || | |||||| |||||||||||| |||| | Sbjct 1178976 CATCAAAATGGCCGCGGACCGGGGTGCGTTCATCGATCAGTCCCAGTCGTTCAACATTCA 1179035 Query 20725 CATGGAGAATCCGAGCCTGGCGAAGCTGAGCTCCATGCATATGTACGGCTGGCACAAGGG 20784 | ||| | |||| | | ||||||| || || || | ||||||||| | | ||| Sbjct 1179036 CGTGGCCGAACCGAACTACGGCAAGCTGACGTCGATTCACTTCTACGGCTGGAAGATGGG 1179095 Query 20785 GCTCAAGACGGGCATGTACTATCTGCGGACC 20815 || ||||||||||||||||||||||| ||| Sbjct 1179096 CCTGAAGACGGGCATGTACTATCTGCGCACC 1179126 >seq9254 Length=4138565 Score = 87.8 bits (96), Expect = 2e-12 Identities = 93/123 (76%), Gaps = 0/123 (0%) Strand=Plus/Minus Query 59991 GCTTTTGCATGCGTGGAAGGAATCTTCTTCTCTGGCTCGTTCTGTGCTATTTTCTGGCTC 60050 || ||||| ||| || ||||| |||||| ||| || ||||| |||||||| Sbjct 2197370 GCGTTTGCCGCCGTCGAGGGAATTTTCTTCAGCGGCAGCTTTGCCGCTATCTTCTGGCTT 2197311 Query 60051 AAAAAGCGTGGCCTCATGCCGGGCCTGAGTTTCTCCAACGAGCTGATTTCCCGGGACGAG 60110 || ||||| || || ||||| ||| ||| ||||| |||||||||||||| || |||||| Sbjct 2197310 AAGAAGCGAGGACTGATGCCAGGCTTGACCTTCTCGAACGAGCTGATTTCGCGTGACGAG 2197251 Query 60111 GGC 60113 ||| Sbjct 2197250 GGC 2197248 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 548459031876480