Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Anopheles_20sinensis_20[genbank_20GCA_5F000441895.2_202014-07-14]
9,592 sequences; 220,777,669 total letters
Query= NC_028108.1
Length=171454
Score E
Sequences producing significant alignments: (Bits) Value
seq9207 457 1e-123
seq9254 87.8 2e-12
>seq9207
Length=1443628
Score = 457 bits (506), Expect = 1e-123
Identities = 1185/1765 (67%), Gaps = 72/1765 (4%)
Strand=Plus/Minus
Query 78190 GTTCGCAAATAGTACATGCCCGTCTTGAGACCCTTCTTCCATCCGTACAGGTGCATACTC 78249
|| |||| |||||||||||||||||| || ||| ||||||| ||||| | ||| || |
Sbjct 1179125 GTGCGCAGATAGTACATGCCCGTCTTCAGGCCCATCTTCCAGCCGTAGAAGTGAATCGAC 1179066
Query 78250 GACAGCTTGGCCAGACTCGGGTTCT-CCATGAAGATGTTGAGCGACTGGGACTGGTCGAT 78308
| ||||||| || | | ||||| ||| | ||||||| |||||||||||| |||||
Sbjct 1179065 GTCAGCTTG-CCGTAGTTCGGTTCGGCCACGTGAATGTTGAACGACTGGGACTGATCGAT 1179007
Query 78309 GTACGCACCGCGGTCGGCCGCCATGTCGATGACCGACTTTTGCGGAATCTCCCAGATGGT 78368
| ||||||| ||||| || ||||| | |||| || || || |||||||| | ||
Sbjct 1179006 GAACGCACCCCGGTCCGCGGCCATTTTGATGCACGTTTTCACCGATATCTCCCACACCGT 1178947
Query 78369 CCGGTAAATGGCCTTCAGCTCTTCCTGGATGTCC---AGCGCTTGTACGCTCCCACCGGC 78425
| ||| | | | | | | | | || ||| | | |||| || ||||
Sbjct 1178946 CTTGTACAGGTCGCGGATGTGCTGCGGAATTTCCTCGATCCGCTGTA---TCGAACCGTT 1178890
Query 78426 TCGCACAA---TTTCATTCTTAATTTGAGGGTTCCAGCGATTGATCTTCTGA-AGATCCC 78481
|| ||| ||| ||||| || | | ||| | || ||| | ||||||
Sbjct 1178889 GTGCGCAAGGATTTGGTTCTTCATATCGTCATCCCACAGGCCGAG-TTCGGTCAGATCCT 1178831
Query 78482 GGACCAGGTGCCGGTTAATCATGACGAACTCGCCGGCCAGGGTCCGGCGCAGGTAGATGT 78541
| | ||| || |||| | || ||||||||| | ||| || || ||||| ||
Sbjct 1178830 GCAGCAGATGGTGGTTGACCACCTGGAACTCGCCCGACAGCACGCGCCGATTGTAGACGT 1178771
Query 78542 TGGTCGTGTACGGCTCGAAAGCCTCGTTGTTCCCCATGATCTGGGCGGTCGAGGCGGTCG 78601
| | |||||||||||||| | ||||||||| |||| || ||||| || ||||||||||
Sbjct 1178770 TCGAAGTGTACGGCTCGAACGACTCGTTGTTGCCCAGAATTTGGGCCGTGGAGGCGGTCG 1178711
Query 78602 GCATGGGTGCGACCAGTAGAGAATTCCGAAGACCATGCGTCTTGATCTCGACCTTTAG-- 78659
|||| ||||| | ||| || |||||||| | ||||||| | |||| |||| ||
Sbjct 1178710 GCATCGGTGCCAGCAGGAGCGAATTCCGGATACCATGCTTGGCAATCTTTTCCTTCAGCT 1178651
Query 78660 --GCC--GTCCCAAAATTCATTCGCCGCGATCCCCCACATGTCCGGTTGAAGGATACCCT 78715
||| || ||| | || | | | || |||||||||| || ||||| ||||
Sbjct 1178650 CGGCCCAGTTCCACAGGTCCGTTGGGGTCTTCTCCCACATGTCGTACTGCAGGATTCCCT 1178591
Query 78716 CGGACGCCGGCGACCCCTTGAACGTCTCGTAAGATCCCTCCTCCTTGGCGAGTTCGCAT- 78774
| | |||| | |||| | |||| ||||| | || || ||| | || ||
Sbjct 1178590 TGCTCACCGGACAGCCCTCGTACGTTTCGTACGGACCGTCGCGGGCGGCCAACTCACAGC 1178531
Query 78775 --GACTCGAGCAGGGCCGCGTGGTACACAGCCTCGAAGATGCCCTTGTTGAGCTCGCGCG 78832
| ||| || || ||| | ||| | | ||| ||||| || ||| |||| | |
Sbjct 1178530 TAGCCTCCAG-AGCGCCA--TAGTAGATGGTCTCAAAGATCTGCTGGTTCAGCTTTTGTG 1178474
Query 78833 CCTTGGTCTCGT-CGAACGAAAGGCCGAGCATCATGAAGACATCGGCCAGGCCCTGGACG 78891
| || || | | || ||| | ||| | | ||||| ||||||||| ||||| |||
Sbjct 1178473 C-TTCCTCACTTTCGTACGGATGGCGCATGAGAATGAACGCATCGGCCATTCCCTGCACG 1178415
Query 78892 CCGATAGCGATCGGTCGGTGGCGCATGTTG---CTCTTTCGGGCCGCCTCGGTC---GGG 78945
|||||| |||| |||||||||||||||||| | ||| |||||| | | |||
Sbjct 1178414 CCGATACCGATAGGTCGGTGGCGCATGTTGGAACGCTT------CGCCTCCGGCACCGGG 1178361
Query 78946 TAAAAGTTCCGATCGATGACGCGGTTCAGGTTACGCGTGACGACCCGAGTCACCTCGTAC 79005
|| |||| ||||||| ||||||||| |||||||||| | | ||||| | |
Sbjct 1178360 TAGTAGTTGATGTCGATGATTTTGTTCAGGTTGCGCGTGACGATCTTGGCGACCTCCTTC 1178301
Query 79006 AATTTGGCGAAATCAAAA-TGATTTCCTT--TGATGAAAGTCGGTAG-GCACAGCGATGC 79061
| || |||| || | || ||| | | || | || ||| | ||| ||
Sbjct 1178300 AGCTTCACGAAGTCGTACGTGCGATCCGGCCTCACAAACATGTTCAGCGCA-ATCGACGC 1178242
Query 79062 CAGGTTGCACACGGCCGTCTCGTCCG--GGCTAGAAACCTCGATGATTTCTGTGCACAAA 79119
||| |||||||| || | |||||| | | || | ||||| ||| || |||||||
Sbjct 1178241 CAGATTGCACACCGCAATTTCGTCCTTCGACGAGTA--CTCGACGATCTCCGTGCACAGG 1178184
Query 79120 TTAGACGACTTGATGGTGCCGATGTTCTTCTGGTTGCTCTTCTCGTTACAGGCGTCCTTG 79179
|| || ||||||| ||||| | ||||| ||||||||||||| ||| || || ||||||
Sbjct 1178183 TTCGAGCACTTGATCGTGCCCACGTTCTGCTGGTTGCTCTTCCGGTTGCACGCATCCTTG 1178124
Query 79180 TAGCACATGTACGGCGTCCCGGTCTCAACCTGACTCTTGA-GAACGCCGTCCCAGATGTC 79238
||| |||||||||| || ||||| ||||| || || || ||| | ||| | ||
Sbjct 1178123 TAGAGCATGTACGGCACGCCCGTCTCGACCTGCGACTCGATGATCGC-GAACCACAGATC 1178065
Query 79239 CCGGGCCCGGACAACCTTCTTGTACCGACCCTGTGCGACGTACGTCCG-GTACAACTCGT 79297
| | ||| || | || ||||||| | |||| | ||| ||||| | ||
Sbjct 1178064 CTGCGCCTTCACCTGCCGGATGAACCGACCTTCCTTCTCGTA-GCCCGTGTACAGC-CGC 1178007
Query 79298 TGAAAGCCT---CCCCATAGACATCGGGCAGGCCCGGGCACTCGTGCGGGCACATCAGGT 79354
| ||| || ||||| ||| || | ||| || ||||| |||||||| ||||| |||
Sbjct 1178006 TCAAACTCTTCGCCCCAC-GAC-TCCGACAGCCCGGGGCAGTCGTGCGGACACATAAGGC 1177949
Query 79355 GCCAGTCCTCGTCCTTCTCAACCTTCTCCATGAAGAGGTCCGGGATCCACAGGGCCGTGA 79414
||| |||| | ||| ||| || |||||| || ||||| | |||||| || ||
Sbjct 1177948 TCCACATTTCGTTCGCCTCCACCCGCTTCATGAACAGATCCGGCACCCACAGCGCGTAGA 1177889
Query 79415 AGAGGTCGCGGCAACGCATCTCCTCGTCGCCCTGGTTCAGACGCAGCTCGAGAAAGTCCA 79474
| | ||| || ||| | |||||| | ||| ||| ||| |||||||| || |
Sbjct 1177888 ACATGTCACGCGCACGGACCTCCTCCTTGCCAGTGTTTTTCTTCAGATCGAGAAACTCAA 1177829
Query 79475 TGATGTCGGCGTGCCACGGCTCCAGATAGATGGCGAACGAACCCTTGCGCTTGCCGCCGC 79534
| ||| | ||||||||||| || ||||||||||||| ||| |||||| |||||
Sbjct 1177828 ACACATCGCCATGCCACGGCTCGAGGTAGATGGCGAACGCACCGGGACGCTTGTTGCCGC 1177769
Query 79535 CCTGGTTGACGTACCGGGCCGTGTTGTTGAAAACTCGGAGCATGGGCACGATGCCGTCGG 79594
|||||| || |||||||||||||||||| | || || ||||| || || | |||| ||
Sbjct 1177768 CCTGGTCCACATACCGGGCCGTGTTGTTGTAGACACGCAGCATCGGAACCAACCCGTTGG 1177709
Query 79595 CGACGCCGTTCGTCCCGTTGATTCGTGTACCGCTCGCCCGAATGTTCGAGCA-GTGGATT 79653
|| |||||||| || || ||||| ||||||| ||| | ||| || |
Sbjct 1177708 AGATACCGTTCGTGCCCGCAATGTACGTACCCTTCGCCCGGATG-CAGTGCACGTTCAGA 1177650
Query 79654 CCGATGCCCCCGGACCACTTGGAGATGTGCGCGCACTCCTTGAGCGTCTCGTAGATGCCC 79713
|| ||||| |||| |||||||||| | ||||||| ||| ||||| ||||| || |||
Sbjct 1177649 CCAATGCCTCCGGCGGACTTGGAGATCAGTGCGCACTGCTTCAGCGTGTCGTAAATTCCC 1177590
Query 79714 TCGATCGAGTCGTCCTTCATAGCGACCAGGAAGCAGCTCGACATCTGTGGGTTGTTCGTA 79773
||||| ||||||| ||| | | || |||||| ||||| || || | |||
Sbjct 1177589 TCGATACTGTCGTCCGACATCGTTAGGAGAAAGCAGGACGACAGTTGGGGCCGCTGCGTG 1177530
Query 79774 CCGGCGTTGAAGAGGGTCGGCGTCGCGTGCGTGAAGAACTTTTGGCTC----ATCAGATC 79829
| || || | |||||||| |||||||| ||| | | |||| | || ||
Sbjct 1177529 GCCGCCGCAAACATGGTCGGCGAGGCGTGCGTAAAG----TATCGCTCCGAAAGCAAATT 1177474
Query 79830 GTACGTCTC-CTTGACGCGCGGGAGGTCGTCGCCGTGGATGCCGACCGCGACGCGCATGA 79888
|||||| || ||| ||| || ||| ||||||||||| |||| || |||||||| |
Sbjct 1177473 GTACGTTTCGATTGCCGC-ATCGATGTCCTCGCCGTGGATCCCGATGGCAACGCGCATCA 1177415
Query 79889 AGAGGTACTG-GGGCGTCTCGCCGA 79912
| || ||| || ||| ||| |||
Sbjct 1177414 GCATGTGCTGCGGTCGT-TCGACGA 1177391
Score = 343 bits (380), Expect = 2e-89
Identities = 1086/1651 (66%), Gaps = 48/1651 (3%)
Strand=Plus/Plus
Query 19195 CTTCACGCACGCGACGCCGACCCTTTTCAACGCCGGTACGAACAACCCGCAGATGTCGAG 19254
||| |||||||| |||||||| | || || | ||| | || || |||||
Sbjct 1177494 CTTTACGCACGCCTCGCCGACCATGTTTGCGGCGGCCACGCAGCGGCCCCAACTGTCGTC 1177553
Query 19255 CTGTTTCCTAGTGGCTATGAAGGATGACAGCATTGAGGGCATCTACGAGACGCTCAAGGA 19314
||| || || | | ||| ||| ||||| || ||||| || ||||| ||||| ||| |
Sbjct 1177554 CTGCTTTCTCCTAACGATGTCGGACGACAGTATCGAGGGAATTTACGACACGCTGAAGCA 1177613
Query 19315 GTGCGCGCACATCTCCAAGTGGTCCGGGGGTATCGGGATCCAC-TGCTCGAATATCCGGT 19373
|||||| | |||||||||| |||| || || || | || ||| | ||||||
Sbjct 1177614 GTGCGCACTGATCTCCAAGTCCGCCGGAGGCATTGGTCTGAACGTGCACTGC-ATCCGGG 1177672
Query 19374 CGAGTGGTACACGAATCAATGGGACGAACGGAGTAGCCGACGGTATCGTCCCAATGCTCC 19433
||| ||||| || || |||||||| | || |||| | || || ||||| |
Sbjct 1177673 CGAAGGGTACGTACATTGCGGGCACGAACGGTATCTCCAACGGGTTGGTTCCGATGCTGC 1177732
Query 19434 GCGTCTTCAACAACACGGCCAGGTACGTCAACCAGGGGGGCGGCAAACGCAAGGGCTCGT 19493
| |||| ||||||||||||| |||| || ||||||| ||| ||| || || |||
Sbjct 1177733 GTGTCTACAACAACACGGCCCGGTATGTGGACCAGGGCGGCAACAAGCGTCCCGGTGCGT 1177792
Query 19494 TCGCCATCTACCTCGAGCCATGGCACGCGGACGTCATGGATTTCCTCGAACTGCGCCTGA 19553
||||||||||||||||||| ||||| | || || | || || ||||| ||| |
Sbjct 1177793 TCGCCATCTACCTCGAGCCGTGGCATGGCGATGTGTTTGAGTTTCTCGATCTGAAGAAAA 1177852
Query 19554 ACCAGGGTGACGAGGAGATGCGCTGTCGCGACCTCTTCACGGCCTTGTGGATTCCGGACC 19613
|| || | |||||| | || || ||| | ||| || ||||| | ||||| |
Sbjct 1177853 ACACTGGCAAGGAGGAGGTCCGTGCGCGTGACATGTTCTACGCGCTGTGGGTGCCGGATC 1177912
Query 19614 TATTCATGGAGAAGGTTGAGAAGGACGAAGAATGGCACCTGATGTGCCCGCACGAATGCC 19673
| |||||| || ||| ||| | ||||| ||| ||| ||||| |||||||| ||||
Sbjct 1177913 TGTTCATGAAGCGGGTGGAGGCGAACGAAATGTGGAGCCTTATGTGTCCGCACGACTGCC 1177972
Query 19674 CTGGCCTACCCGACGTC-TACGGCGAGGCGTTCAATGAGTTGTAC-CGGACTTACGTAGC 19731
| || || | || ||| | ||||| | ||| | | ||||| ||| | ||||
Sbjct 1177973 CCGGGCTGTCGGA-GTCGTGGGGCGAAGAGTTTGAGCGGCTGTACACGGGC-TACGAGAA 1178030
Query 19732 CCAGGGCCGGTTCAAGAAGGTGGTCCGGGCCCGGGACGTCTG-GGACCGCG-TCCTCAAA 19789
| || ||||||| | ||| ||| | ||| |||| || |||| || || |
Sbjct 1178031 GGAAGGTCGGTTCATCCGGCAGGTGAAGGCGCAGGA--TCTGTGGTTCGCGATCATCGAG 1178088
Query 19790 AGCCAGGTCGAGACCGGCACACCGTACATGTGCTACAAGGACGCCGCGAACGCCAAGTCA 19849
||||||||||| ||| ||||||||| ||||||||| || ||| |||
Sbjct 1178089 TCGCAGGTCGAGACGGGCGTGCCGTACATGCTCTACAAGGATGCGTGCAACCGGAAGAGC 1178148
Query 19850 AATCAGAAGAACATCGGCGCGATCAAGTCGTCCAACCTGTGTACTGAAATCATGGAGGTT 19909
|| ||| ||||| | ||| ||||||||| || |||||||| || || ||| | |||
Sbjct 1178149 AACCAGCAGAACGTGGGCACGATCAAGTGCTCGAACCTGTGCACGGAGATCGTCGAGTAC 1178208
Query 19910 TCCAAGCCGGACGAGACTGCCGTGTGTAATCTGGCGTCCCTGTGC-CTGCCGACTTTCGT 19968
|| | |||||| | ||| ||||| ||||||||||| | ||| ||| | || ||
Sbjct 1178209 TCGTCGAAGGACGAAATTGCGGTGTGCAATCTGGCGTCGAT-TGCGCTGAACATGTTTGT 1178267
Query 19969 CAAGGCC---TC-CTCCTTCGACTTTGCCAAATTGTACGAGGTGACCCGGGTCGTCACGC 20024
||||| || | | | |||||| | || || | ||||| || | |||||||||
Sbjct 1178268 -GAGGCCGGATCGCACGTACGACTTCGTGAAGCTGAAGGAGGTCGCCAAGATCGTCACGC 1178326
Query 20025 GTAATCTGAATCGCGTCATCGATCGGAACTTTTACCC---GACCGAGGCGGCGCGCAAGT 20081
| || ||||| ||||||| |||| ||||| | | |||||| ||| |
Sbjct 1178327 GCAACCTGAACAAAATCATCGACATCAACTACTACCCGGTGCCGGAGGCGAAGCG---TT 1178383
Query 20082 CGAATATGCGCCACCGGCCGATCGCGATCGGCGTCCAGGGCCTGGCCGACGTTTTCATGA 20141
| || ||||||||||| || |||| |||||||| ||||| ||||||| | |||||
Sbjct 1178384 CCAACATGCGCCACCGACCTATCGGTATCGGCGTGCAGGGAATGGCCGATGCGTTCATTC 1178443
Query 20142 TGCTCGGCCTCTCATTCGACGATCCCAAGGCGCGCGAGCTCAACAAGGGCATCTTCGAGG 20201
| | ||| | | ||| | | || | |||| ||| || ||||| |||
Sbjct 1178444 TCATGCGCCATCCGTACGAAAGTGAGGAAGCACAAAAGCTGAACCAGCAGATCTTTGAGA 1178503
Query 20202 CCGTGTACCACGCGGCCCTCCTGGAATC---GTGCGAACTCGCCAAAGAGGACGGCCCGT 20258
|| | ||| | ||| || ||||| | || || | ||| ||||| ||||
Sbjct 1178504 CCATCTACTA--TGGCGCT-CTGGAGGCTAGCTGTGAGTTGGCCGCCCGCGACGGTCCGT 1178560
Query 20259 ACGAGACGTTCAAGGGGTCGCCCGCGTCCGAGGGTATCCTCCAGCCGGACATGTGGGGCG 20318
|||| |||| | |||| | || | | | |||| ||||| ||| ||||||||||
Sbjct 1178561 ACGAAACGTACGAGGGCTGTCCGGTGAGCAAGGGAATCCTGCAGTACGACATGTGGGAGA 1178620
Query 20319 TCACTGAGAATGAGTTTTGGA---GCGCC---CTCAAGGTTGAGAT---CAAGACCCACG 20369
|| | || | |||| | ||| || |||| |||| |||| || |
Sbjct 1178621 AGACCCCAACGGACCTGTGGAACTGGGCCGAGCTGAAGGAAAAGATTGCCAAG---CATG 1178677
Query 20370 GGCTTCGCAACTCGTTGCTCGTCGCGCCCATGCCGACCGCCTCGACCGCCCAGATCATGG 20429
| | || || ||| | || | || || |||||||||||||| || ||||| || |||
Sbjct 1178678 GTATCCGGAATTCGCTCCTGCTGGCACCGATGCCGACCGCCTCCACGGCCCAAATTCTGG 1178737
Query 20430 GGAACAACGAGGCTTTCGAGCCGTACACGACCAACATCTACTTGCGTCGTACACTGGCCG 20489
| ||||||||| | |||||||||||||| | ||| ||||| || || ||| | |
Sbjct 1178738 GCAACAACGAGTCGTTCGAGCCGTACACTTCGAACGTCTACAATCGGCGCGTGCTGTCGG 1178797
Query 20490 GTGAGTTCGTCATGGTAAACAAGCACCTGGTCCGCGA-CTTGCAGAAGATCGATATGTGG 20548
| |||||| |||| ||| | || ||| | | || || | ||| ||| |||||
Sbjct 1178798 GCGAGTTCCAGGTGGTCAACCACCATCTGCTGCAGGATCTGACCGAA-CTCGGCCTGTGG 1178856
Query 20549 TCGCCCAAAATTAAGAATGAAATTGTCCGAGC-CGGCGGGAGCGTCCAG-GCAT--TGGA 20604
| | || ||||| |||| | | || | ||| | ||| | || |||
Sbjct 1178857 GATGACGATATGAAGAACCAAATCCT-TGCGCACAACGGTTCGATACAGCGGATCGAGGA 1178915
Query 20605 TATCCCCCAGAACCTCAAGGACATTTACAGGACCGTATGGGAAATCCCACAGAAGAGCAT 20664
|| || ||| || || ||| | |||| ||| || ||||| || | ||| |
Sbjct 1178916 AATTCCGCAGCACATCCGCGACCTGTACAAGACGGTGTGGGAGATATCGGTGAAAACGTG 1178975
Query 20665 CATCGACATGGCGGCCGATCGCGGCGCCTACATCGACCAGTCCCAGTCGCTCAATGTCTT 20724
|||| | ||||| || || || || || | |||||| |||||||||||| |||| |
Sbjct 1178976 CATCAAAATGGCCGCGGACCGGGGTGCGTTCATCGATCAGTCCCAGTCGTTCAACATTCA 1179035
Query 20725 CATGGAGAATCCGAGCCTGGCGAAGCTGAGCTCCATGCATATGTACGGCTGGCACAAGGG 20784
| ||| | |||| | | ||||||| || || || | ||||||||| | | |||
Sbjct 1179036 CGTGGCCGAACCGAACTACGGCAAGCTGACGTCGATTCACTTCTACGGCTGGAAGATGGG 1179095
Query 20785 GCTCAAGACGGGCATGTACTATCTGCGGACC 20815
|| ||||||||||||||||||||||| |||
Sbjct 1179096 CCTGAAGACGGGCATGTACTATCTGCGCACC 1179126
>seq9254
Length=4138565
Score = 87.8 bits (96), Expect = 2e-12
Identities = 93/123 (76%), Gaps = 0/123 (0%)
Strand=Plus/Minus
Query 59991 GCTTTTGCATGCGTGGAAGGAATCTTCTTCTCTGGCTCGTTCTGTGCTATTTTCTGGCTC 60050
|| ||||| ||| || ||||| |||||| ||| || ||||| ||||||||
Sbjct 2197370 GCGTTTGCCGCCGTCGAGGGAATTTTCTTCAGCGGCAGCTTTGCCGCTATCTTCTGGCTT 2197311
Query 60051 AAAAAGCGTGGCCTCATGCCGGGCCTGAGTTTCTCCAACGAGCTGATTTCCCGGGACGAG 60110
|| ||||| || || ||||| ||| ||| ||||| |||||||||||||| || ||||||
Sbjct 2197310 AAGAAGCGAGGACTGATGCCAGGCTTGACCTTCTCGAACGAGCTGATTTCGCGTGACGAG 2197251
Query 60111 GGC 60113
|||
Sbjct 2197250 GGC 2197248
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 548459031876480
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