Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Anopheles_20sinensis_20[genbank_20GCA_5F000441895.2_202014-07-14]
9,592 sequences; 220,777,669 total letters
Query= NC_028491.1
Length=98392
Score E
Sequences producing significant alignments: (Bits) Value
seq8738 107 1e-18
seq9240 98.7 6e-16
seq8899 89.7 3e-13
>seq8738
Length=1280009
Score = 107 bits (118), Expect = 1e-18
Identities = 161/226 (71%), Gaps = 2/226 (1%)
Strand=Plus/Plus
Query 34489 AGACGCAACACCAAATGGAGAGTGCTCTCCTTTTGAATGTTATAATCTGAAAGTGTTCGC 34548
||||| | |||| ||||||||| |||||| || ||||| ||||| ||||| || ||
Sbjct 1177444 AGACGAAGGACCAGATGGAGAGTAGACTCCTTCTGGATGTTGTAATCCGAAAGAGTACGG 1177503
Query 34549 TCGTCTTCAAGTTGTTTACCGGCAAATATTAAACGCTGTTGGTCCGGCGGCACTCCCTCC 34608
| ||||| || || || |||||||| || | |||||| || || || || | |||||||
Sbjct 1177504 CCATCTTCCAGCTGCTTGCCGGCAAAGATGAGACGCTGCTGATCTGGAGGGATTCCCTCC 1177563
Query 34609 TTGTCTGTGATCTTTTGTTTTAACGAT-AAAATTGTGTCTTCGCTCTCCACTTCCACGGT 34667
||||| ||| || | || || | ||| ||||| |||||| |||| ||
Sbjct 1177564 TTGTC-CTGAATCTTGGCCTTCACATTCTCAATCGTGTCCGAAGGCTCCACCTCCAACGT 1177622
Query 34668 TATCGTTTTACCGGTTAACGTTTTCACAAAAATCTGCATGTTGATT 34713
|| || || || || | || || || ||||||||||| ||||||
Sbjct 1177623 GATGGTCTTTCCCGTAAGGGTCTTGACGAAAATCTGCATCTTGATT 1177668
Score = 95.1 bits (104), Expect = 8e-15
Identities = 96/125 (77%), Gaps = 0/125 (0%)
Strand=Plus/Plus
Query 34489 AGACGCAACACCAAATGGAGAGTGCTCTCCTTTTGAATGTTATAATCTGAAAGTGTTCGC 34548
||||| | |||| ||||||||| |||||| || ||||| ||||| ||||| || ||
Sbjct 1177216 AGACGAAGGACCAGATGGAGAGTAGACTCCTTCTGGATGTTGTAATCCGAAAGGGTACGG 1177275
Query 34549 TCGTCTTCAAGTTGTTTACCGGCAAATATTAAACGCTGTTGGTCCGGCGGCACTCCCTCC 34608
| ||||| || || || |||||||| || | |||||| || || || || | |||||||
Sbjct 1177276 CCATCTTCCAGCTGCTTGCCGGCAAAGATGAGACGCTGCTGATCTGGAGGGATTCCCTCC 1177335
Query 34609 TTGTC 34613
|||||
Sbjct 1177336 TTGTC 1177340
>seq9240
Length=943838
Score = 98.7 bits (108), Expect = 6e-16
Identities = 157/223 (70%), Gaps = 2/223 (1%)
Strand=Plus/Plus
Query 34489 AGACGCAACACCAAATGGAGAGTGCTCTCCTTTTGAATGTTATAATCTGAAAGTGTTCGC 34548
|| |||| ||||| |||||| || |||||| |||||||| || || || || || ||
Sbjct 630366 AGGCGCAGCACCAGATGGAGGGTCGACTCCTTCTGAATGTTGTAGTCGGACAGCGTGCGT 630425
Query 34549 TCGTCTTCAAGTTGTTTACCGGCAAATATTAAACGCTGTTGGTCCGGCGGCACTCCCTCC 34608
| || || || || || ||||| || || | |||||| ||||||||||| | ||||||
Sbjct 630426 CCATCCTCCAGCTGCTTGCCGGCGAAGATCAGACGCTGCTGGTCCGGCGGGATGCCCTCC 630485
Query 34609 TTGTCTGTGATCTTTTGTTTTAACGAT-AAAATTGTGTCTTCGCTCTCCACTTCCACGGT 34667
||||| |||| || | || || | || || || | ||| || || | |||
Sbjct 630486 TTGTCCTGGATC-TTCGCCTTCACATTCTCGATCGTATCCGAGGGCTCGACCTCAAGGGT 630544
Query 34668 TATCGTTTTACCGGTTAACGTTTTCACAAAAATCTGCATGTTG 34710
|| || ||||| || | ||||| || || |||||||| |||
Sbjct 630545 AATGGTCTTACCCGTGAGGGTTTTGACGAAGATCTGCATCTTG 630587
>seq8899
Length=3132144
Score = 89.7 bits (98), Expect = 3e-13
Identities = 160/231 (69%), Gaps = 2/231 (1%)
Strand=Plus/Plus
Query 34480 CCGCCTCTAAGACGCAACACCAAATGGAGAGTGCTCTCCTTTTGAATGTTATAATCTGAA 34539
|| || | ||| |||| |||| || || || |||||| |||||||| || || |||
Sbjct 384453 CCACCACGAAGTCGCAGAACCAGGTGAAGGGTCGACTCCTTCTGAATGTTGTAGTCCGAA 384512
Query 34540 AGTGTTCGCTCGTCTTCAAGTTGTTTACCGGCAAATATTAAACGCTGTTGGTCCGGCGGC 34599
|| || || | || || || || |||||||| || || | ||||||||| || |||||
Sbjct 384513 AGCGTACGGCCATCCTCCAGCTGCTTACCGGCGAAGATCAGACGCTGTTGATCTGGCGGA 384572
Query 34600 ACTCCCTCCTTGTCTGTGATCTTTTGTTTTAACGATAAA-ATTGTGTCTTCGCTCTCCAC 34658
| ||| ||||| || ||| ||| | || || | || ||||| ||| ||
Sbjct 384573 ATTCCTTCCTTATCC-TGAATTTTCGCCTTCACATTCTCGATCGTGTCCGACGGCTCGAC 384631
Query 34659 TTCCACGGTTATCGTTTTACCGGTTAACGTTTTCACAAAAATCTGCATGTT 34709
|| | ||| || || || || || | |||||||| ||||||||||| ||
Sbjct 384632 CTCAAGGGTGATGGTCTTGCCAGTGAGGGTTTTCACGAAAATCTGCATCTT 384682
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 314692807322936
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |