Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Anopheles_20sinensis_20[genbank_20GCA_5F000441895.2_202014-07-14]
9,592 sequences; 220,777,669 total letters
Query= NC_028636.1
Length=135952
Score E
Sequences producing significant alignments: (Bits) Value
seq8899 143 2e-29
seq9240 125 6e-24
seq9239 122 8e-23
seq8738 122 8e-23
>seq8899
Length=3132144
Score = 143 bits (158), Expect = 2e-29
Identities = 168/227 (74%), Gaps = 0/227 (0%)
Strand=Plus/Minus
Query 26988 ATGCAGATATTTGTAAAAACTCTGACCGGCAAGTCTATTACTCTTGAAGTGGAACCGTCC 27047
|||||||| || || ||||| || || |||||| | || || ||||| || || |||||
Sbjct 384679 ATGCAGATTTTCGTGAAAACCCTCACTGGCAAGACCATCACCCTTGAGGTCGAGCCGTCG 384620
Query 27048 GACTCGATTGAGATGGTCAAACAAAAAATTCAAGACAAAGAAGGCATACCACCCGATCAA 27107
||| |||| |||| || || |||||||| || || ||||| || || || ||||||
Sbjct 384619 GACACGATCGAGAATGTGAAGGCGAAAATTCAGGATAAGGAAGGAATTCCGCCAGATCAA 384560
Query 27108 CAGCGTTTAATATACGCCGGCAAACAATTGGAAGACAGTTCGACCGTTTCCGATTACAAC 27167
|||||| | || | |||||| || || |||| || | || |||| || ||||||
Sbjct 384559 CAGCGTCTGATCTTCGCCGGTAAGCAGCTGGAGGATGGCCGTACGCTTTCGGACTACAAC 384500
Query 27168 ATTCAAAAGGAGTCGACCTTACATTTGGTTTTGCGTTTGCGGGGTGG 27214
||||| |||||||||||| | || ||||| |||| | || |||||
Sbjct 384499 ATTCAGAAGGAGTCGACCCTTCACCTGGTTCTGCGACTTCGTGGTGG 384453
>seq9240
Length=943838
Score = 125 bits (138), Expect = 6e-24
Identities = 164/227 (72%), Gaps = 0/227 (0%)
Strand=Plus/Minus
Query 26988 ATGCAGATATTTGTAAAAACTCTGACCGGCAAGTCTATTACTCTTGAAGTGGAACCGTCC 27047
|||||||| || || ||||| || || || ||| | ||||| ||||| || || || ||
Sbjct 630583 ATGCAGATCTTCGTCAAAACCCTCACGGGTAAGACCATTACCCTTGAGGTCGAGCCCTCG 630524
Query 27048 GACTCGATTGAGATGGTCAAACAAAAAATTCAAGACAAAGAAGGCATACCACCCGATCAA 27107
|| |||| |||| || || || || || ||||| || ||||| || || || ||
Sbjct 630523 GATACGATCGAGAATGTGAAGGCGAAGATCCAGGACAAGGAGGGCATCCCGCCGGACCAG 630464
Query 27108 CAGCGTTTAATATACGCCGGCAAACAATTGGAAGACAGTTCGACCGTTTCCGATTACAAC 27167
|||||| | || | ||||||||| || |||| || | || | ||||| ||||||
Sbjct 630463 CAGCGTCTGATCTTCGCCGGCAAGCAGCTGGAGGATGGACGCACGCTGTCCGACTACAAC 630404
Query 27168 ATTCAAAAGGAGTCGACCTTACATTTGGTTTTGCGTTTGCGGGGTGG 27214
||||| |||||||||||| | ||| |||| |||| | || |||||
Sbjct 630403 ATTCAGAAGGAGTCGACCCTCCATCTGGTGCTGCGCCTCCGTGGTGG 630357
>seq9239
Length=1433044
Score = 122 bits (134), Expect = 8e-23
Identities = 208/302 (69%), Gaps = 0/302 (0%)
Strand=Plus/Minus
Query 135461 ACGCATGACCCGTTGTGGAACGCGGCACAACGGCAGCTTAAGCGAGAAGGCAAAATGCAC 135520
||||| ||| |||||||||| || || | |||| | | || ||||| |||||
Sbjct 683543 ACGCACGACGATCTGTGGAACGCCGCCCAGCTGCAGATGGTGAAGGAGGGCAAGATGCAT 683484
Query 135521 GGATTTATGCGCATGTATTGGGCAAAAAAGATATTGGAATGGTCTGCATCGCCTGCAGAG 135580
||||| |||| ||||| ||||| || |||||| | || ||| | |||| | ||
Sbjct 683483 GGATTCCTGCGGATGTACTGGGCGAAGAAGATACTCGAGTGGAGCAAAACGCCCGAGGAA 683424
Query 135581 GCGCTACAACACGCAATATTTTTTAATGATTACTACAGTTTAGATGGACGCGATTCAAAT 135640
||||| | || || | | || ||| ||||| ||||||| ||||| | ||
Sbjct 683423 GCGCTCGAGGCGGCGATCTACCTGAACGATCGTTACAGCCTAGATGGGCGCGACCCGAAC 683364
Query 135641 GGCTACGTAGGTTGTATGTGGTCTATTTGCGGTGTACACGATCAAGGATGGAAGGAGCGC 135700
|| ||||| ||||| |||||||| || || | |||||||| ||||||||||| ||
Sbjct 683363 GGGTACGTCGGTTGCATGTGGTCGATCGCTGGAATTCACGATCAGGGATGGAAGGAACGG 683304
Query 135701 AAAGTGTTTGGCAAGATTCGCTATATGAACTATGACGGTTGTACAAGAAAATTTAATGTA 135760
| | || || || || | || |||||||| || ||||||| ||| || || ||||
Sbjct 683303 GACATCTTCGGTAAAATAAGATACATGAACTACGAAGGTTGTAAAAGGAAGTTCGATGTG 683244
Query 135761 AA 135762
||
Sbjct 683243 AA 683242
>seq8738
Length=1280009
Score = 122 bits (134), Expect = 8e-23
Identities = 163/227 (72%), Gaps = 0/227 (0%)
Strand=Plus/Minus
Query 26988 ATGCAGATATTTGTAAAAACTCTGACCGGCAAGTCTATTACTCTTGAAGTGGAACCGTCC 27047
||||| || || || || || ||||| || ||| | || || | || || || || ||
Sbjct 1177433 ATGCAAATTTTCGTCAAGACCCTGACTGGAAAGACCATCACGTTGGAGGTTGAGCCTTCG 1177374
Query 27048 GACTCGATTGAGATGGTCAAACAAAAAATTCAAGACAAAGAAGGCATACCACCCGATCAA 27107
||| ||||||||| || || || ||||| ||||| || || || || || |||||
Sbjct 1177373 GACACGATTGAGAATGTGAAGGCCAAGATTCAGGACAAGGAGGGAATCCCTCCAGATCAG 1177314
Query 27108 CAGCGTTTAATATACGCCGGCAAACAATTGGAAGACAGTTCGACCGTTTCCGATTACAAC 27167
|||||| | || | |||||||| || ||||||| | ||| |||| |||||||||
Sbjct 1177313 CAGCGTCTCATCTTTGCCGGCAAGCAGCTGGAAGATGGCCGTACCCTTTCGGATTACAAC 1177254
Query 27168 ATTCAAAAGGAGTCGACCTTACATTTGGTTTTGCGTTTGCGGGGTGG 27214
|| || |||||||| || | ||| |||| | ||| |||| |||||
Sbjct 1177253 ATCCAGAAGGAGTCTACTCTCCATCTGGTCCTTCGTCTGCGCGGTGG 1177207
Score = 122 bits (134), Expect = 8e-23
Identities = 165/230 (72%), Gaps = 0/230 (0%)
Strand=Plus/Minus
Query 26988 ATGCAGATATTTGTAAAAACTCTGACCGGCAAGTCTATTACTCTTGAAGTGGAACCGTCC 27047
|||||||| || || || || || || || ||| | || || | || ||||| || ||
Sbjct 1177661 ATGCAGATTTTCGTCAAGACCCTTACGGGAAAGACCATCACGTTGGAGGTGGAGCCTTCG 1177602
Query 27048 GACTCGATTGAGATGGTCAAACAAAAAATTCAAGACAAAGAAGGCATACCACCCGATCAA 27107
||| ||||||||| || || || ||||| ||||| || || || || || |||||
Sbjct 1177601 GACACGATTGAGAATGTGAAGGCCAAGATTCAGGACAAGGAGGGAATCCCTCCAGATCAG 1177542
Query 27108 CAGCGTTTAATATACGCCGGCAAACAATTGGAAGACAGTTCGACCGTTTCCGATTACAAC 27167
|||||| | || | |||||||| || ||||||| | || |||| |||||||||
Sbjct 1177541 CAGCGTCTCATCTTTGCCGGCAAGCAGCTGGAAGATGGCCGTACTCTTTCGGATTACAAC 1177482
Query 27168 ATTCAAAAGGAGTCGACCTTACATTTGGTTTTGCGTTTGCGGGGTGGCAT 27217
|| || |||||||| || | ||| |||| | ||| |||| ||||| ||
Sbjct 1177481 ATCCAGAAGGAGTCTACTCTCCATCTGGTCCTTCGTCTGCGCGGTGGAAT 1177432
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 434866253283840
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |