Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Anopheles_20sinensis_20[genbank_20GCA_5F000441895.2_202014-07-14] 9,592 sequences; 220,777,669 total letters Query= NC_028636.1 Length=135952 Score E Sequences producing significant alignments: (Bits) Value seq8899 143 2e-29 seq9240 125 6e-24 seq9239 122 8e-23 seq8738 122 8e-23 >seq8899 Length=3132144 Score = 143 bits (158), Expect = 2e-29 Identities = 168/227 (74%), Gaps = 0/227 (0%) Strand=Plus/Minus Query 26988 ATGCAGATATTTGTAAAAACTCTGACCGGCAAGTCTATTACTCTTGAAGTGGAACCGTCC 27047 |||||||| || || ||||| || || |||||| | || || ||||| || || ||||| Sbjct 384679 ATGCAGATTTTCGTGAAAACCCTCACTGGCAAGACCATCACCCTTGAGGTCGAGCCGTCG 384620 Query 27048 GACTCGATTGAGATGGTCAAACAAAAAATTCAAGACAAAGAAGGCATACCACCCGATCAA 27107 ||| |||| |||| || || |||||||| || || ||||| || || || |||||| Sbjct 384619 GACACGATCGAGAATGTGAAGGCGAAAATTCAGGATAAGGAAGGAATTCCGCCAGATCAA 384560 Query 27108 CAGCGTTTAATATACGCCGGCAAACAATTGGAAGACAGTTCGACCGTTTCCGATTACAAC 27167 |||||| | || | |||||| || || |||| || | || |||| || |||||| Sbjct 384559 CAGCGTCTGATCTTCGCCGGTAAGCAGCTGGAGGATGGCCGTACGCTTTCGGACTACAAC 384500 Query 27168 ATTCAAAAGGAGTCGACCTTACATTTGGTTTTGCGTTTGCGGGGTGG 27214 ||||| |||||||||||| | || ||||| |||| | || ||||| Sbjct 384499 ATTCAGAAGGAGTCGACCCTTCACCTGGTTCTGCGACTTCGTGGTGG 384453 >seq9240 Length=943838 Score = 125 bits (138), Expect = 6e-24 Identities = 164/227 (72%), Gaps = 0/227 (0%) Strand=Plus/Minus Query 26988 ATGCAGATATTTGTAAAAACTCTGACCGGCAAGTCTATTACTCTTGAAGTGGAACCGTCC 27047 |||||||| || || ||||| || || || ||| | ||||| ||||| || || || || Sbjct 630583 ATGCAGATCTTCGTCAAAACCCTCACGGGTAAGACCATTACCCTTGAGGTCGAGCCCTCG 630524 Query 27048 GACTCGATTGAGATGGTCAAACAAAAAATTCAAGACAAAGAAGGCATACCACCCGATCAA 27107 || |||| |||| || || || || || ||||| || ||||| || || || || Sbjct 630523 GATACGATCGAGAATGTGAAGGCGAAGATCCAGGACAAGGAGGGCATCCCGCCGGACCAG 630464 Query 27108 CAGCGTTTAATATACGCCGGCAAACAATTGGAAGACAGTTCGACCGTTTCCGATTACAAC 27167 |||||| | || | ||||||||| || |||| || | || | ||||| |||||| Sbjct 630463 CAGCGTCTGATCTTCGCCGGCAAGCAGCTGGAGGATGGACGCACGCTGTCCGACTACAAC 630404 Query 27168 ATTCAAAAGGAGTCGACCTTACATTTGGTTTTGCGTTTGCGGGGTGG 27214 ||||| |||||||||||| | ||| |||| |||| | || ||||| Sbjct 630403 ATTCAGAAGGAGTCGACCCTCCATCTGGTGCTGCGCCTCCGTGGTGG 630357 >seq9239 Length=1433044 Score = 122 bits (134), Expect = 8e-23 Identities = 208/302 (69%), Gaps = 0/302 (0%) Strand=Plus/Minus Query 135461 ACGCATGACCCGTTGTGGAACGCGGCACAACGGCAGCTTAAGCGAGAAGGCAAAATGCAC 135520 ||||| ||| |||||||||| || || | |||| | | || ||||| ||||| Sbjct 683543 ACGCACGACGATCTGTGGAACGCCGCCCAGCTGCAGATGGTGAAGGAGGGCAAGATGCAT 683484 Query 135521 GGATTTATGCGCATGTATTGGGCAAAAAAGATATTGGAATGGTCTGCATCGCCTGCAGAG 135580 ||||| |||| ||||| ||||| || |||||| | || ||| | |||| | || Sbjct 683483 GGATTCCTGCGGATGTACTGGGCGAAGAAGATACTCGAGTGGAGCAAAACGCCCGAGGAA 683424 Query 135581 GCGCTACAACACGCAATATTTTTTAATGATTACTACAGTTTAGATGGACGCGATTCAAAT 135640 ||||| | || || | | || ||| ||||| ||||||| ||||| | || Sbjct 683423 GCGCTCGAGGCGGCGATCTACCTGAACGATCGTTACAGCCTAGATGGGCGCGACCCGAAC 683364 Query 135641 GGCTACGTAGGTTGTATGTGGTCTATTTGCGGTGTACACGATCAAGGATGGAAGGAGCGC 135700 || ||||| ||||| |||||||| || || | |||||||| ||||||||||| || Sbjct 683363 GGGTACGTCGGTTGCATGTGGTCGATCGCTGGAATTCACGATCAGGGATGGAAGGAACGG 683304 Query 135701 AAAGTGTTTGGCAAGATTCGCTATATGAACTATGACGGTTGTACAAGAAAATTTAATGTA 135760 | | || || || || | || |||||||| || ||||||| ||| || || |||| Sbjct 683303 GACATCTTCGGTAAAATAAGATACATGAACTACGAAGGTTGTAAAAGGAAGTTCGATGTG 683244 Query 135761 AA 135762 || Sbjct 683243 AA 683242 >seq8738 Length=1280009 Score = 122 bits (134), Expect = 8e-23 Identities = 163/227 (72%), Gaps = 0/227 (0%) Strand=Plus/Minus Query 26988 ATGCAGATATTTGTAAAAACTCTGACCGGCAAGTCTATTACTCTTGAAGTGGAACCGTCC 27047 ||||| || || || || || ||||| || ||| | || || | || || || || || Sbjct 1177433 ATGCAAATTTTCGTCAAGACCCTGACTGGAAAGACCATCACGTTGGAGGTTGAGCCTTCG 1177374 Query 27048 GACTCGATTGAGATGGTCAAACAAAAAATTCAAGACAAAGAAGGCATACCACCCGATCAA 27107 ||| ||||||||| || || || ||||| ||||| || || || || || ||||| Sbjct 1177373 GACACGATTGAGAATGTGAAGGCCAAGATTCAGGACAAGGAGGGAATCCCTCCAGATCAG 1177314 Query 27108 CAGCGTTTAATATACGCCGGCAAACAATTGGAAGACAGTTCGACCGTTTCCGATTACAAC 27167 |||||| | || | |||||||| || ||||||| | ||| |||| ||||||||| Sbjct 1177313 CAGCGTCTCATCTTTGCCGGCAAGCAGCTGGAAGATGGCCGTACCCTTTCGGATTACAAC 1177254 Query 27168 ATTCAAAAGGAGTCGACCTTACATTTGGTTTTGCGTTTGCGGGGTGG 27214 || || |||||||| || | ||| |||| | ||| |||| ||||| Sbjct 1177253 ATCCAGAAGGAGTCTACTCTCCATCTGGTCCTTCGTCTGCGCGGTGG 1177207 Score = 122 bits (134), Expect = 8e-23 Identities = 165/230 (72%), Gaps = 0/230 (0%) Strand=Plus/Minus Query 26988 ATGCAGATATTTGTAAAAACTCTGACCGGCAAGTCTATTACTCTTGAAGTGGAACCGTCC 27047 |||||||| || || || || || || || ||| | || || | || ||||| || || Sbjct 1177661 ATGCAGATTTTCGTCAAGACCCTTACGGGAAAGACCATCACGTTGGAGGTGGAGCCTTCG 1177602 Query 27048 GACTCGATTGAGATGGTCAAACAAAAAATTCAAGACAAAGAAGGCATACCACCCGATCAA 27107 ||| ||||||||| || || || ||||| ||||| || || || || || ||||| Sbjct 1177601 GACACGATTGAGAATGTGAAGGCCAAGATTCAGGACAAGGAGGGAATCCCTCCAGATCAG 1177542 Query 27108 CAGCGTTTAATATACGCCGGCAAACAATTGGAAGACAGTTCGACCGTTTCCGATTACAAC 27167 |||||| | || | |||||||| || ||||||| | || |||| ||||||||| Sbjct 1177541 CAGCGTCTCATCTTTGCCGGCAAGCAGCTGGAAGATGGCCGTACTCTTTCGGATTACAAC 1177482 Query 27168 ATTCAAAAGGAGTCGACCTTACATTTGGTTTTGCGTTTGCGGGGTGGCAT 27217 || || |||||||| || | ||| |||| | ||| |||| ||||| || Sbjct 1177481 ATCCAGAAGGAGTCTACTCTCCATCTGGTCCTTCGTCTGCGCGGTGGAAT 1177432 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 434866253283840