Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Anopheles_20sinensis_20[genbank_20GCA_5F000441895.2_202014-07-14] 9,592 sequences; 220,777,669 total letters Query= NC_029997.1 Length=105667 Score E Sequences producing significant alignments: (Bits) Value seq8738 116 3e-21 seq8899 111 1e-19 seq9325 102 6e-17 seq9240 98.7 7e-16 >seq8738 Length=1280009 Score = 116 bits (128), Expect = 3e-21 Identities = 148/201 (74%), Gaps = 2/201 (1%) Strand=Plus/Minus Query 23608 AAAATGCAGATTTTCGTTAAAACCCTCACGGGAAAAACGATCACTCTCGAAGTTGACTCC 23667 || |||||||||||||| || ||||| |||||||| || ||||| | || || || | Sbjct 1177664 AAGATGCAGATTTTCGTCAAGACCCTTACGGGAAAGACCATCACGTTGGAGGTGGAGCCT 1177605 Query 23668 ACGGACACTGTTGA-AATATTAAAACAAAAAATTGCTGACAAAGAAGGTGTACCGCCAGA 23726 ||||||| |||| ||| | || | || | || ||||| || || | || ||||| Sbjct 1177604 TCGGACACGATTGAGAATGTGAAGGCCAAGA-TTCAGGACAAGGAGGGAATCCCTCCAGA 1177546 Query 23727 TCAACAGCGTTTAATATTTGCCGGCAAACAACTGGAAGACGAACGCACTTTAGGCGATTA 23786 ||| |||||| | || ||||||||||| || |||||||| | || ||| | ||||| Sbjct 1177545 TCAGCAGCGTCTCATCTTTGCCGGCAAGCAGCTGGAAGATGGCCGTACTCTTTCGGATTA 1177486 Query 23787 CAACATACAAAAAGAGTCCAC 23807 |||||| || || ||||| || Sbjct 1177485 CAACATCCAGAAGGAGTCTAC 1177465 Score = 111 bits (122), Expect = 1e-19 Identities = 148/201 (74%), Gaps = 6/201 (3%) Strand=Plus/Minus Query 23610 AATGCAGATTTTCGTTAAAACCCTCACGGGAAAAACGATCACTCTCGAAGTTGACTCCAC 23669 |||||| |||||||| || ||||| || ||||| || ||||| | || ||||| | | Sbjct 1177434 AATGCAAATTTTCGTCAAGACCCTGACTGGAAAGACCATCACGTTGGAGGTTGAGCCTTC 1177375 Query 23670 GGACACTGTTGA-AATATTAAAACAAAAAATTGCTGACAAAGAAGGTGTACCGCCAGATC 23728 |||||| |||| ||| | || | || | || ||||| || || | || ||||||| Sbjct 1177374 GGACACGATTGAGAATGTGAAGGCCAAGA-TTCAGGACAAGGAGGGAATCCCTCCAGATC 1177316 Query 23729 AACAGCGTTTAATATTTGCCGGCAAACAACTGGAAGACGAACGCAC--TTTAGGCGATTA 23786 | |||||| | || ||||||||||| || |||||||| | || || ||| || |||| Sbjct 1177315 AGCAGCGTCTCATCTTTGCCGGCAAGCAGCTGGAAGATGGCCGTACCCTTTCGG--ATTA 1177258 Query 23787 CAACATACAAAAAGAGTCCAC 23807 |||||| || || ||||| || Sbjct 1177257 CAACATCCAGAAGGAGTCTAC 1177237 >seq8899 Length=3132144 Score = 111 bits (122), Expect = 1e-19 Identities = 149/203 (73%), Gaps = 6/203 (3%) Strand=Plus/Minus Query 23608 AAAATGCAGATTTTCGTTAAAACCCTCACGGGAAAAACGATCACTCTCGAAGTTGACTCC 23667 || |||||||||||||| ||||||||||| || || || ||||| || || || || | Sbjct 384682 AAGATGCAGATTTTCGTGAAAACCCTCACTGGCAAGACCATCACCCTTGAGGTCGAGCCG 384623 Query 23668 ACGGACACTGTTGA-AATATTAAAACAAAAAATTGCTGACAAAGAAGGTGTACCGCCAGA 23726 ||||||| | || ||| | || | |||| || || || ||||| | |||||||| Sbjct 384622 TCGGACACGATCGAGAATGTGAAGGCGAAAA-TTCAGGATAAGGAAGGAATTCCGCCAGA 384564 Query 23727 TCAACAGCGTTTAATATTTGCCGGCAAACAACTGGAAGACGAACG--CACTTTAGGCGAT 23784 |||||||||| | || || ||||| || || ||||| || | || | |||| | || Sbjct 384563 TCAACAGCGTCTGATCTTCGCCGGTAAGCAGCTGGAGGATGGCCGTACGCTTTCG--GAC 384506 Query 23785 TACAACATACAAAAAGAGTCCAC 23807 |||||||| || || ||||| || Sbjct 384505 TACAACATTCAGAAGGAGTCGAC 384483 >seq9325 Length=2359367 Score = 102 bits (112), Expect = 6e-17 Identities = 160/229 (70%), Gaps = 0/229 (0%) Strand=Plus/Plus Query 23610 AATGCAGATTTTCGTTAAAACCCTCACGGGAAAAACGATCACTCTCGAAGTTGACTCCAC 23669 ||||||||||||||| || || || || || || || ||||||||||| || || | | Sbjct 260903 AATGCAGATTTTCGTGAAGACGCTGACTGGCAAGACCATCACTCTCGAGGTCGAGCCTTC 260962 Query 23670 GGACACTGTTGAAATATTAAAACAAAAAATTGCTGACAAAGAAGGTGTACCGCCAGATCA 23729 |||||| | || | | || || || ||||| || ||| | || |||||||| Sbjct 260963 GGACACCATCGAGAACGTCAAGGCTAAGATCCAGGACAAGGAGGGTATTCCCCCAGATCA 261022 Query 23730 ACAGCGTTTAATATTTGCCGGCAAACAACTGGAAGACGAACGCACTTTAGGCGATTACAA 23789 |||||||| || || || || || || ||||| |||| ||| ||| | ||| ||||| Sbjct 261023 GCAGCGTTTGATCTTCGCTGGAAAGCAGCTGGAGGACGGACGTACTCTGTCCGACTACAA 261082 Query 23790 CATACAAAAAGAGTCCACATTACATTTAGTTTTAAGGTTGCGAGGAGGA 23838 ||| || || || || || | || || ||| | | | || |||||| Sbjct 261083 CATCCAGAAGGAATCGACCCTTCACTTGGTTCTTCGTCTTCGCGGAGGA 261131 >seq9240 Length=943838 Score = 98.7 bits (108), Expect = 7e-16 Identities = 144/201 (72%), Gaps = 2/201 (1%) Strand=Plus/Minus Query 23608 AAAATGCAGATTTTCGTTAAAACCCTCACGGGAAAAACGATCACTCTCGAAGTTGACTCC 23667 || |||||||| ||||| |||||||||||||| || || || || || || || || || Sbjct 630586 AAGATGCAGATCTTCGTCAAAACCCTCACGGGTAAGACCATTACCCTTGAGGTCGAGCCC 630527 Query 23668 ACGGACACTGTTGA-AATATTAAAACAAAAAATTGCTGACAAAGAAGGTGTACCGCCAGA 23726 |||| || | || ||| | || | || || ||||| || || | ||||| || Sbjct 630526 TCGGATACGATCGAGAATGTGAAGGC-GAAGATCCAGGACAAGGAGGGCATCCCGCCGGA 630468 Query 23727 TCAACAGCGTTTAATATTTGCCGGCAAACAACTGGAAGACGAACGCACTTTAGGCGATTA 23786 || |||||| | || || |||||||| || ||||| || | |||||| | ||| || Sbjct 630467 CCAGCAGCGTCTGATCTTCGCCGGCAAGCAGCTGGAGGATGGACGCACGCTGTCCGACTA 630408 Query 23787 CAACATACAAAAAGAGTCCAC 23807 |||||| || || ||||| || Sbjct 630407 CAACATTCAGAAGGAGTCGAC 630387 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 337970085832736