Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Anopheles_20sinensis_20[genbank_20GCA_5F000441895.2_202014-07-14]
9,592 sequences; 220,777,669 total letters
Query= NC_029997.1
Length=105667
Score E
Sequences producing significant alignments: (Bits) Value
seq8738 116 3e-21
seq8899 111 1e-19
seq9325 102 6e-17
seq9240 98.7 7e-16
>seq8738
Length=1280009
Score = 116 bits (128), Expect = 3e-21
Identities = 148/201 (74%), Gaps = 2/201 (1%)
Strand=Plus/Minus
Query 23608 AAAATGCAGATTTTCGTTAAAACCCTCACGGGAAAAACGATCACTCTCGAAGTTGACTCC 23667
|| |||||||||||||| || ||||| |||||||| || ||||| | || || || |
Sbjct 1177664 AAGATGCAGATTTTCGTCAAGACCCTTACGGGAAAGACCATCACGTTGGAGGTGGAGCCT 1177605
Query 23668 ACGGACACTGTTGA-AATATTAAAACAAAAAATTGCTGACAAAGAAGGTGTACCGCCAGA 23726
||||||| |||| ||| | || | || | || ||||| || || | || |||||
Sbjct 1177604 TCGGACACGATTGAGAATGTGAAGGCCAAGA-TTCAGGACAAGGAGGGAATCCCTCCAGA 1177546
Query 23727 TCAACAGCGTTTAATATTTGCCGGCAAACAACTGGAAGACGAACGCACTTTAGGCGATTA 23786
||| |||||| | || ||||||||||| || |||||||| | || ||| | |||||
Sbjct 1177545 TCAGCAGCGTCTCATCTTTGCCGGCAAGCAGCTGGAAGATGGCCGTACTCTTTCGGATTA 1177486
Query 23787 CAACATACAAAAAGAGTCCAC 23807
|||||| || || ||||| ||
Sbjct 1177485 CAACATCCAGAAGGAGTCTAC 1177465
Score = 111 bits (122), Expect = 1e-19
Identities = 148/201 (74%), Gaps = 6/201 (3%)
Strand=Plus/Minus
Query 23610 AATGCAGATTTTCGTTAAAACCCTCACGGGAAAAACGATCACTCTCGAAGTTGACTCCAC 23669
|||||| |||||||| || ||||| || ||||| || ||||| | || ||||| | |
Sbjct 1177434 AATGCAAATTTTCGTCAAGACCCTGACTGGAAAGACCATCACGTTGGAGGTTGAGCCTTC 1177375
Query 23670 GGACACTGTTGA-AATATTAAAACAAAAAATTGCTGACAAAGAAGGTGTACCGCCAGATC 23728
|||||| |||| ||| | || | || | || ||||| || || | || |||||||
Sbjct 1177374 GGACACGATTGAGAATGTGAAGGCCAAGA-TTCAGGACAAGGAGGGAATCCCTCCAGATC 1177316
Query 23729 AACAGCGTTTAATATTTGCCGGCAAACAACTGGAAGACGAACGCAC--TTTAGGCGATTA 23786
| |||||| | || ||||||||||| || |||||||| | || || ||| || ||||
Sbjct 1177315 AGCAGCGTCTCATCTTTGCCGGCAAGCAGCTGGAAGATGGCCGTACCCTTTCGG--ATTA 1177258
Query 23787 CAACATACAAAAAGAGTCCAC 23807
|||||| || || ||||| ||
Sbjct 1177257 CAACATCCAGAAGGAGTCTAC 1177237
>seq8899
Length=3132144
Score = 111 bits (122), Expect = 1e-19
Identities = 149/203 (73%), Gaps = 6/203 (3%)
Strand=Plus/Minus
Query 23608 AAAATGCAGATTTTCGTTAAAACCCTCACGGGAAAAACGATCACTCTCGAAGTTGACTCC 23667
|| |||||||||||||| ||||||||||| || || || ||||| || || || || |
Sbjct 384682 AAGATGCAGATTTTCGTGAAAACCCTCACTGGCAAGACCATCACCCTTGAGGTCGAGCCG 384623
Query 23668 ACGGACACTGTTGA-AATATTAAAACAAAAAATTGCTGACAAAGAAGGTGTACCGCCAGA 23726
||||||| | || ||| | || | |||| || || || ||||| | ||||||||
Sbjct 384622 TCGGACACGATCGAGAATGTGAAGGCGAAAA-TTCAGGATAAGGAAGGAATTCCGCCAGA 384564
Query 23727 TCAACAGCGTTTAATATTTGCCGGCAAACAACTGGAAGACGAACG--CACTTTAGGCGAT 23784
|||||||||| | || || ||||| || || ||||| || | || | |||| | ||
Sbjct 384563 TCAACAGCGTCTGATCTTCGCCGGTAAGCAGCTGGAGGATGGCCGTACGCTTTCG--GAC 384506
Query 23785 TACAACATACAAAAAGAGTCCAC 23807
|||||||| || || ||||| ||
Sbjct 384505 TACAACATTCAGAAGGAGTCGAC 384483
>seq9325
Length=2359367
Score = 102 bits (112), Expect = 6e-17
Identities = 160/229 (70%), Gaps = 0/229 (0%)
Strand=Plus/Plus
Query 23610 AATGCAGATTTTCGTTAAAACCCTCACGGGAAAAACGATCACTCTCGAAGTTGACTCCAC 23669
||||||||||||||| || || || || || || || ||||||||||| || || | |
Sbjct 260903 AATGCAGATTTTCGTGAAGACGCTGACTGGCAAGACCATCACTCTCGAGGTCGAGCCTTC 260962
Query 23670 GGACACTGTTGAAATATTAAAACAAAAAATTGCTGACAAAGAAGGTGTACCGCCAGATCA 23729
|||||| | || | | || || || ||||| || ||| | || ||||||||
Sbjct 260963 GGACACCATCGAGAACGTCAAGGCTAAGATCCAGGACAAGGAGGGTATTCCCCCAGATCA 261022
Query 23730 ACAGCGTTTAATATTTGCCGGCAAACAACTGGAAGACGAACGCACTTTAGGCGATTACAA 23789
|||||||| || || || || || || ||||| |||| ||| ||| | ||| |||||
Sbjct 261023 GCAGCGTTTGATCTTCGCTGGAAAGCAGCTGGAGGACGGACGTACTCTGTCCGACTACAA 261082
Query 23790 CATACAAAAAGAGTCCACATTACATTTAGTTTTAAGGTTGCGAGGAGGA 23838
||| || || || || || | || || ||| | | | || ||||||
Sbjct 261083 CATCCAGAAGGAATCGACCCTTCACTTGGTTCTTCGTCTTCGCGGAGGA 261131
>seq9240
Length=943838
Score = 98.7 bits (108), Expect = 7e-16
Identities = 144/201 (72%), Gaps = 2/201 (1%)
Strand=Plus/Minus
Query 23608 AAAATGCAGATTTTCGTTAAAACCCTCACGGGAAAAACGATCACTCTCGAAGTTGACTCC 23667
|| |||||||| ||||| |||||||||||||| || || || || || || || || ||
Sbjct 630586 AAGATGCAGATCTTCGTCAAAACCCTCACGGGTAAGACCATTACCCTTGAGGTCGAGCCC 630527
Query 23668 ACGGACACTGTTGA-AATATTAAAACAAAAAATTGCTGACAAAGAAGGTGTACCGCCAGA 23726
|||| || | || ||| | || | || || ||||| || || | ||||| ||
Sbjct 630526 TCGGATACGATCGAGAATGTGAAGGC-GAAGATCCAGGACAAGGAGGGCATCCCGCCGGA 630468
Query 23727 TCAACAGCGTTTAATATTTGCCGGCAAACAACTGGAAGACGAACGCACTTTAGGCGATTA 23786
|| |||||| | || || |||||||| || ||||| || | |||||| | ||| ||
Sbjct 630467 CCAGCAGCGTCTGATCTTCGCCGGCAAGCAGCTGGAGGATGGACGCACGCTGTCCGACTA 630408
Query 23787 CAACATACAAAAAGAGTCCAC 23807
|||||| || || ||||| ||
Sbjct 630407 CAACATTCAGAAGGAGTCGAC 630387
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 337970085832736
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |