Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Anopheles_20sinensis_20[genbank_20GCA_5F000441895.2_202014-07-14] 9,592 sequences; 220,777,669 total letters Query= NC_031033.1 Length=217124 Score E Sequences producing significant alignments: (Bits) Value seq9254 96.9 5e-15 >seq9254 Length=4138565 Score = 96.9 bits (106), Expect = 5e-15 Identities = 183/264 (69%), Gaps = 9/264 (3%) Strand=Plus/Plus Query 48128 TTTAAACATTAAACATGCAAAATCACAATGAAGACCTTCATCTCTACTAATTAATTCGTT 48187 ||| ||||| | || ||||| ||||| || | || || || | ||| | ||||| Sbjct 2197215 TTTGAACATAAGGCAAGCAAAGTCACAGTGCAAGCCCTCGTCACGCGAAATCAGCTCGTT 2197274 Query 48188 AGAAAATGTGAGACCGGGCATTAGTCCACGTTTTTTGAGCCAAAATATTGCCGCGAAAGA 48247 || || || | || ||||| ||||| || || || ||||| || || || || |||| Sbjct 2197275 CGAGAAGGTCAAGCCTGGCATCAGTCCTCGCTTCTTAAGCCAGAAGATAGCGGC-AAAGC 2197333 Query 48248 TCCAGAA-AAGAATATGCCTTCTACGGCCGCAAATGCGGTAAGTCTCTCTCCGTAACTGG 48306 | | | ||||| || || || ||||| ||||| ||| || | ||| ||| | ||| Sbjct 2197334 TGCCGCTGAAGAAAATTCCCTCGACGGCGGCAAACGCGACAACACGCTCGCCGAAGTTGG 2197393 Query 48307 CTTCGTTGTGT---ATCCACCGTT--GTGCCCAATCAGCCTTCTTCTTTACACAAGGCAT 48361 ||| ||| ||||| ||| ||||||| |||||||||||||| ||||| || | Sbjct 2197394 CTTTCTTGCTCGAAATCCA--GTTCAGTGCCCAGTCAGCCTTCTTCTTCACACACGGTAG 2197451 Query 48362 TGTTTCTATAGCATTAAAGAGAAA 48385 ||||| || ||||| || || || Sbjct 2197452 CGTTTCGATGGCATTGAACAGGAA 2197475 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 694585509210880