Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Anopheles_20sinensis_20[genbank_20GCA_5F000441895.2_202014-07-14] 9,592 sequences; 220,777,669 total letters Query= NC_033775.1 Length=376207 Score E Sequences producing significant alignments: (Bits) Value seq8738 150 4e-31 seq9325 147 5e-30 seq9240 141 2e-28 seq8899 140 8e-28 >seq8738 Length=1280009 Score = 150 bits (166), Expect = 4e-31 Identities = 157/206 (76%), Gaps = 0/206 (0%) Strand=Plus/Minus Query 177924 CAAATTTTCGTGAAAACTCTCACAGGAAAAACGATCACCCTCGAGGTGGAAAGCTCAGAC 177983 || |||||||| || || || || ||||| || ||||| | |||||||| || ||| Sbjct 1177658 CAGATTTTCGTCAAGACCCTTACGGGAAAGACCATCACGTTGGAGGTGGAGCCTTCGGAC 1177599 Query 177984 ACCATCGAGAACGTCAAACAAAAGATTCAGGACAAAGAAGGAATCCCTCCGGACCAGCAA 178043 || || ||||| || || |||||||||||||| || ||||||||||| || ||||| Sbjct 1177598 ACGATTGAGAATGTGAAGGCCAAGATTCAGGACAAGGAGGGAATCCCTCCAGATCAGCAG 1177539 Query 178044 CGACTTATCTTCGCCGGAAAACAGCTCGAAGATGGAAGGACTCTTGCCGATTATAACGTC 178103 || || ||||| ||||| || ||||| |||||||| | |||||| | ||||| ||| || Sbjct 1177538 CGTCTCATCTTTGCCGGCAAGCAGCTGGAAGATGGCCGTACTCTTTCGGATTACAACATC 1177479 Query 178104 CAAAAAGAATCAACACTGCATCTTGT 178129 || || || || || || ||||| || Sbjct 1177478 CAGAAGGAGTCTACTCTCCATCTGGT 1177453 Score = 147 bits (162), Expect = 5e-30 Identities = 156/206 (76%), Gaps = 0/206 (0%) Strand=Plus/Minus Query 177924 CAAATTTTCGTGAAAACTCTCACAGGAAAAACGATCACCCTCGAGGTGGAAAGCTCAGAC 177983 ||||||||||| || || || || ||||| || ||||| | ||||| || || ||| Sbjct 1177430 CAAATTTTCGTCAAGACCCTGACTGGAAAGACCATCACGTTGGAGGTTGAGCCTTCGGAC 1177371 Query 177984 ACCATCGAGAACGTCAAACAAAAGATTCAGGACAAAGAAGGAATCCCTCCGGACCAGCAA 178043 || || ||||| || || |||||||||||||| || ||||||||||| || ||||| Sbjct 1177370 ACGATTGAGAATGTGAAGGCCAAGATTCAGGACAAGGAGGGAATCCCTCCAGATCAGCAG 1177311 Query 178044 CGACTTATCTTCGCCGGAAAACAGCTCGAAGATGGAAGGACTCTTGCCGATTATAACGTC 178103 || || ||||| ||||| || ||||| |||||||| | || ||| | ||||| ||| || Sbjct 1177310 CGTCTCATCTTTGCCGGCAAGCAGCTGGAAGATGGCCGTACCCTTTCGGATTACAACATC 1177251 Query 178104 CAAAAAGAATCAACACTGCATCTTGT 178129 || || || || || || ||||| || Sbjct 1177250 CAGAAGGAGTCTACTCTCCATCTGGT 1177225 Score = 84.2 bits (92), Expect = 5e-11 Identities = 148/214 (69%), Gaps = 4/214 (2%) Strand=Plus/Minus Query 177915 AAAATGCTCCAAATTTTCGTGAAAACTCTCACAGGAAAAACGATCACCCTCGAGGTGGAA 177974 ||||||| ||||||| ||||| || || || || || |||||||| || || || | Sbjct 1179347 AAAATGC---AAATTTTTGTGAAGACACTGACCGGCAAGACGATCACGCTAGACGTCGTG 1179291 Query 177975 AGCTCAGACACCATCGAGAACGTCAAACAAAAGATTCAGGACAAAGAAGGAATCCCTCCG 178034 ||| || || || | | | ||| || || | || ||| || || | ||| Sbjct 1179290 GCCTCCGAGACGGTCTTGGATATAAAAAGCAAAATCGAAGAGCGAGAGGGTATAGCACCG 1179231 Query 178035 GACCAGCAACGACTTATCTTCGCCGGAAAACAGCTCGAAGATGGAAGGACTCTTGCCGAT 178094 |||||||| || | |||||||| ||||| ||||| |||||||| ||| || |||| Sbjct 1179230 GACCAGCAGCGTATCATCTTCGCGGGAAAGCAGCTTGAAGATGGGCGGATCATTTCCGAC 1179171 Query 178095 TATAACGTCCAAAAAGAATCAACACTGCATCTTG 178128 || ||| |||| | | |||||| |||| |||| Sbjct 1179170 TACAACATCCAGCACGGATCAACGATGCA-CTTG 1179138 >seq9325 Length=2359367 Score = 147 bits (162), Expect = 5e-30 Identities = 158/208 (76%), Gaps = 1/208 (0%) Strand=Plus/Plus Query 177924 CAAATTTTCGTGAAAACTCTCACAGGAAAAACGATCACCCTCGAGGTGGAAAGCTCAGAC 177983 || ||||||||||| || || || || || || ||||| |||||||| || || ||| Sbjct 260907 CAGATTTTCGTGAAGACGCTGACTGGCAAGACCATCACTCTCGAGGTCGAGCCTTCGGAC 260966 Query 177984 ACCATCGAGAACGTCAAACAAAAGATTCAGGACAAAGAAGGAATCCCTCCGGACCAGCAA 178043 ||||||||||||||||| ||||| |||||||| || || || || || || ||||| Sbjct 260967 ACCATCGAGAACGTCAAGGCTAAGATCCAGGACAAGGAGGGTATTCCCCCAGATCAGCAG 261026 Query 178044 CGACTTATCTTCGCCGGAAAACAGCTCGAAGATGGAAGGACTCTTGCCGATTATAACGTC 178103 || | |||||||| ||||| ||||| || || ||| | ||||| |||| || ||| || Sbjct 261027 CGTTTGATCTTCGCTGGAAAGCAGCTGGAGGACGGACGTACTCTGTCCGACTACAACATC 261086 Query 178104 CAAAAAGAATCAACACTGCATCTTGTTT 178131 || || ||||| || || || |||| || Sbjct 261087 CAGAAGGAATCGACCCTTCA-CTTGGTT 261113 >seq9240 Length=943838 Score = 141 bits (156), Expect = 2e-28 Identities = 155/206 (75%), Gaps = 0/206 (0%) Strand=Plus/Minus Query 177924 CAAATTTTCGTGAAAACTCTCACAGGAAAAACGATCACCCTCGAGGTGGAAAGCTCAGAC 177983 || || ||||| ||||| ||||| || || || || ||||| ||||| || ||| || Sbjct 630580 CAGATCTTCGTCAAAACCCTCACGGGTAAGACCATTACCCTTGAGGTCGAGCCCTCGGAT 630521 Query 177984 ACCATCGAGAACGTCAAACAAAAGATTCAGGACAAAGAAGGAATCCCTCCGGACCAGCAA 178043 || |||||||| || || ||||| |||||||| || || ||||| ||||||||||| Sbjct 630520 ACGATCGAGAATGTGAAGGCGAAGATCCAGGACAAGGAGGGCATCCCGCCGGACCAGCAG 630461 Query 178044 CGACTTATCTTCGCCGGAAAACAGCTCGAAGATGGAAGGACTCTTGCCGATTATAACGTC 178103 || || ||||||||||| || ||||| || |||||| | || || |||| || ||| | Sbjct 630460 CGTCTGATCTTCGCCGGCAAGCAGCTGGAGGATGGACGCACGCTGTCCGACTACAACATT 630401 Query 178104 CAAAAAGAATCAACACTGCATCTTGT 178129 || || || || || || ||||| || Sbjct 630400 CAGAAGGAGTCGACCCTCCATCTGGT 630375 >seq8899 Length=3132144 Score = 140 bits (154), Expect = 8e-28 Identities = 160/215 (74%), Gaps = 0/215 (0%) Strand=Plus/Minus Query 177924 CAAATTTTCGTGAAAACTCTCACAGGAAAAACGATCACCCTCGAGGTGGAAAGCTCAGAC 177983 || |||||||||||||| ||||| || || || |||||||| ||||| || || ||| Sbjct 384676 CAGATTTTCGTGAAAACCCTCACTGGCAAGACCATCACCCTTGAGGTCGAGCCGTCGGAC 384617 Query 177984 ACCATCGAGAACGTCAAACAAAAGATTCAGGACAAAGAAGGAATCCCTCCGGACCAGCAA 178043 || |||||||| || || || |||||||| || |||||||| || || || || || Sbjct 384616 ACGATCGAGAATGTGAAGGCGAAAATTCAGGATAAGGAAGGAATTCCGCCAGATCAACAG 384557 Query 178044 CGACTTATCTTCGCCGGAAAACAGCTCGAAGATGGAAGGACTCTTGCCGATTATAACGTC 178103 || || ||||||||||| || ||||| || ||||| | || ||| | || || ||| | Sbjct 384556 CGTCTGATCTTCGCCGGTAAGCAGCTGGAGGATGGCCGTACGCTTTCGGACTACAACATT 384497 Query 178104 CAAAAAGAATCAACACTGCATCTTGTTTTGAGACT 178138 || || || || || || || || ||| || |||| Sbjct 384496 CAGAAGGAGTCGACCCTTCACCTGGTTCTGCGACT 384462 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1203583264444848