Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Anopheles_20sinensis_20[genbank_20GCA_5F000441895.2_202014-07-14]
9,592 sequences; 220,777,669 total letters
Query= NC_033775.1
Length=376207
Score E
Sequences producing significant alignments: (Bits) Value
seq8738 150 4e-31
seq9325 147 5e-30
seq9240 141 2e-28
seq8899 140 8e-28
>seq8738
Length=1280009
Score = 150 bits (166), Expect = 4e-31
Identities = 157/206 (76%), Gaps = 0/206 (0%)
Strand=Plus/Minus
Query 177924 CAAATTTTCGTGAAAACTCTCACAGGAAAAACGATCACCCTCGAGGTGGAAAGCTCAGAC 177983
|| |||||||| || || || || ||||| || ||||| | |||||||| || |||
Sbjct 1177658 CAGATTTTCGTCAAGACCCTTACGGGAAAGACCATCACGTTGGAGGTGGAGCCTTCGGAC 1177599
Query 177984 ACCATCGAGAACGTCAAACAAAAGATTCAGGACAAAGAAGGAATCCCTCCGGACCAGCAA 178043
|| || ||||| || || |||||||||||||| || ||||||||||| || |||||
Sbjct 1177598 ACGATTGAGAATGTGAAGGCCAAGATTCAGGACAAGGAGGGAATCCCTCCAGATCAGCAG 1177539
Query 178044 CGACTTATCTTCGCCGGAAAACAGCTCGAAGATGGAAGGACTCTTGCCGATTATAACGTC 178103
|| || ||||| ||||| || ||||| |||||||| | |||||| | ||||| ||| ||
Sbjct 1177538 CGTCTCATCTTTGCCGGCAAGCAGCTGGAAGATGGCCGTACTCTTTCGGATTACAACATC 1177479
Query 178104 CAAAAAGAATCAACACTGCATCTTGT 178129
|| || || || || || ||||| ||
Sbjct 1177478 CAGAAGGAGTCTACTCTCCATCTGGT 1177453
Score = 147 bits (162), Expect = 5e-30
Identities = 156/206 (76%), Gaps = 0/206 (0%)
Strand=Plus/Minus
Query 177924 CAAATTTTCGTGAAAACTCTCACAGGAAAAACGATCACCCTCGAGGTGGAAAGCTCAGAC 177983
||||||||||| || || || || ||||| || ||||| | ||||| || || |||
Sbjct 1177430 CAAATTTTCGTCAAGACCCTGACTGGAAAGACCATCACGTTGGAGGTTGAGCCTTCGGAC 1177371
Query 177984 ACCATCGAGAACGTCAAACAAAAGATTCAGGACAAAGAAGGAATCCCTCCGGACCAGCAA 178043
|| || ||||| || || |||||||||||||| || ||||||||||| || |||||
Sbjct 1177370 ACGATTGAGAATGTGAAGGCCAAGATTCAGGACAAGGAGGGAATCCCTCCAGATCAGCAG 1177311
Query 178044 CGACTTATCTTCGCCGGAAAACAGCTCGAAGATGGAAGGACTCTTGCCGATTATAACGTC 178103
|| || ||||| ||||| || ||||| |||||||| | || ||| | ||||| ||| ||
Sbjct 1177310 CGTCTCATCTTTGCCGGCAAGCAGCTGGAAGATGGCCGTACCCTTTCGGATTACAACATC 1177251
Query 178104 CAAAAAGAATCAACACTGCATCTTGT 178129
|| || || || || || ||||| ||
Sbjct 1177250 CAGAAGGAGTCTACTCTCCATCTGGT 1177225
Score = 84.2 bits (92), Expect = 5e-11
Identities = 148/214 (69%), Gaps = 4/214 (2%)
Strand=Plus/Minus
Query 177915 AAAATGCTCCAAATTTTCGTGAAAACTCTCACAGGAAAAACGATCACCCTCGAGGTGGAA 177974
||||||| ||||||| ||||| || || || || || |||||||| || || || |
Sbjct 1179347 AAAATGC---AAATTTTTGTGAAGACACTGACCGGCAAGACGATCACGCTAGACGTCGTG 1179291
Query 177975 AGCTCAGACACCATCGAGAACGTCAAACAAAAGATTCAGGACAAAGAAGGAATCCCTCCG 178034
||| || || || | | | ||| || || | || ||| || || | |||
Sbjct 1179290 GCCTCCGAGACGGTCTTGGATATAAAAAGCAAAATCGAAGAGCGAGAGGGTATAGCACCG 1179231
Query 178035 GACCAGCAACGACTTATCTTCGCCGGAAAACAGCTCGAAGATGGAAGGACTCTTGCCGAT 178094
|||||||| || | |||||||| ||||| ||||| |||||||| ||| || ||||
Sbjct 1179230 GACCAGCAGCGTATCATCTTCGCGGGAAAGCAGCTTGAAGATGGGCGGATCATTTCCGAC 1179171
Query 178095 TATAACGTCCAAAAAGAATCAACACTGCATCTTG 178128
|| ||| |||| | | |||||| |||| ||||
Sbjct 1179170 TACAACATCCAGCACGGATCAACGATGCA-CTTG 1179138
>seq9325
Length=2359367
Score = 147 bits (162), Expect = 5e-30
Identities = 158/208 (76%), Gaps = 1/208 (0%)
Strand=Plus/Plus
Query 177924 CAAATTTTCGTGAAAACTCTCACAGGAAAAACGATCACCCTCGAGGTGGAAAGCTCAGAC 177983
|| ||||||||||| || || || || || || ||||| |||||||| || || |||
Sbjct 260907 CAGATTTTCGTGAAGACGCTGACTGGCAAGACCATCACTCTCGAGGTCGAGCCTTCGGAC 260966
Query 177984 ACCATCGAGAACGTCAAACAAAAGATTCAGGACAAAGAAGGAATCCCTCCGGACCAGCAA 178043
||||||||||||||||| ||||| |||||||| || || || || || || |||||
Sbjct 260967 ACCATCGAGAACGTCAAGGCTAAGATCCAGGACAAGGAGGGTATTCCCCCAGATCAGCAG 261026
Query 178044 CGACTTATCTTCGCCGGAAAACAGCTCGAAGATGGAAGGACTCTTGCCGATTATAACGTC 178103
|| | |||||||| ||||| ||||| || || ||| | ||||| |||| || ||| ||
Sbjct 261027 CGTTTGATCTTCGCTGGAAAGCAGCTGGAGGACGGACGTACTCTGTCCGACTACAACATC 261086
Query 178104 CAAAAAGAATCAACACTGCATCTTGTTT 178131
|| || ||||| || || || |||| ||
Sbjct 261087 CAGAAGGAATCGACCCTTCA-CTTGGTT 261113
>seq9240
Length=943838
Score = 141 bits (156), Expect = 2e-28
Identities = 155/206 (75%), Gaps = 0/206 (0%)
Strand=Plus/Minus
Query 177924 CAAATTTTCGTGAAAACTCTCACAGGAAAAACGATCACCCTCGAGGTGGAAAGCTCAGAC 177983
|| || ||||| ||||| ||||| || || || || ||||| ||||| || ||| ||
Sbjct 630580 CAGATCTTCGTCAAAACCCTCACGGGTAAGACCATTACCCTTGAGGTCGAGCCCTCGGAT 630521
Query 177984 ACCATCGAGAACGTCAAACAAAAGATTCAGGACAAAGAAGGAATCCCTCCGGACCAGCAA 178043
|| |||||||| || || ||||| |||||||| || || ||||| |||||||||||
Sbjct 630520 ACGATCGAGAATGTGAAGGCGAAGATCCAGGACAAGGAGGGCATCCCGCCGGACCAGCAG 630461
Query 178044 CGACTTATCTTCGCCGGAAAACAGCTCGAAGATGGAAGGACTCTTGCCGATTATAACGTC 178103
|| || ||||||||||| || ||||| || |||||| | || || |||| || ||| |
Sbjct 630460 CGTCTGATCTTCGCCGGCAAGCAGCTGGAGGATGGACGCACGCTGTCCGACTACAACATT 630401
Query 178104 CAAAAAGAATCAACACTGCATCTTGT 178129
|| || || || || || ||||| ||
Sbjct 630400 CAGAAGGAGTCGACCCTCCATCTGGT 630375
>seq8899
Length=3132144
Score = 140 bits (154), Expect = 8e-28
Identities = 160/215 (74%), Gaps = 0/215 (0%)
Strand=Plus/Minus
Query 177924 CAAATTTTCGTGAAAACTCTCACAGGAAAAACGATCACCCTCGAGGTGGAAAGCTCAGAC 177983
|| |||||||||||||| ||||| || || || |||||||| ||||| || || |||
Sbjct 384676 CAGATTTTCGTGAAAACCCTCACTGGCAAGACCATCACCCTTGAGGTCGAGCCGTCGGAC 384617
Query 177984 ACCATCGAGAACGTCAAACAAAAGATTCAGGACAAAGAAGGAATCCCTCCGGACCAGCAA 178043
|| |||||||| || || || |||||||| || |||||||| || || || || ||
Sbjct 384616 ACGATCGAGAATGTGAAGGCGAAAATTCAGGATAAGGAAGGAATTCCGCCAGATCAACAG 384557
Query 178044 CGACTTATCTTCGCCGGAAAACAGCTCGAAGATGGAAGGACTCTTGCCGATTATAACGTC 178103
|| || ||||||||||| || ||||| || ||||| | || ||| | || || ||| |
Sbjct 384556 CGTCTGATCTTCGCCGGTAAGCAGCTGGAGGATGGCCGTACGCTTTCGGACTACAACATT 384497
Query 178104 CAAAAAGAATCAACACTGCATCTTGTTTTGAGACT 178138
|| || || || || || || || ||| || ||||
Sbjct 384496 CAGAAGGAGTCGACCCTTCACCTGGTTCTGCGACT 384462
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 1203583264444848
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |