Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Anopheles_20stephensi_20[genbank_20GCA_5F000300775.2_202013-07-19] 23,371 sequences; 221,324,304 total letters Query= NC_001132.2 Length=161773 Score E Sequences producing significant alignments: (Bits) Value seq24 127 2e-24 >seq24 Length=2206587 Score = 127 bits (140), Expect = 2e-24 Identities = 275/409 (67%), Gaps = 2/409 (0%) Strand=Plus/Plus Query 16798 ATCCGCTACAAATTCTATATATTGGCACATTAATTCGCAGTTCATTCCTATAAGACGTAC 16857 |||||| ||||| || || || || |||| | || || ||||| || | | | || Sbjct 1947405 ATCCGCCACAAACTCAATGTACTGCGACATCAGATCACAATTCATGCCGAGCATATCGAC 1947464 Query 16858 CGGAAGAGCTTCCGTCAAAAATCGTTGCTCTATAACAACCGCTTCCTTAATAATACTAGC 16917 ||| || |||| |||||||||| |||||| || || ||||| || || || | Sbjct 1947465 CGGCAGGGCTTTCGTCAAAAATTCTTGCTCGATCACTACCGCATCGCGGATGATCTCCGT 1947524 Query 16918 AACTCGTTCCTCGGACGGTGTATGTTTAAGATGTTTAAACATCAGACATGCGAAATCGCA 16977 || || |||| || || | || |||| || |||||||| || |||||||| || Sbjct 1947525 CACGCGCTCCTTCGAAGGCTTCTGCACCAGATACTTGAACATCAGGCAGGCGAAATCACA 1947584 Query 16978 ATGTAATCCCTCGTCTCTGCTGATAAGTTCGTTAGAAAATGTCAACCCGGGCATCTTTCC 17037 ||| ||||||||||| || || || ||||| || || || | || ||||| || Sbjct 1947585 ATGCAATCCCTCGTCCCTCGAAATCAGCTCGTTCGAGAAGGTAAGACCCGGCATAAGGCC 1947644 Query 17038 TCGTTTCTTTAACCAAAATATCGCGGCGAACGACCCAGAAAAGAATATACCCTCGACGGA 17097 || ||||| | ||| || || | || || || ||||| ||||||||||||| Sbjct 1947645 ACGCTTCTTGAGCCAGAAGATGGACGCAAAGCTGCCGCTGAAGAAGATACCCTCGACGGC 1947704 Query 17098 TGCAAACGCGATTAATCGTTCGGCGTACGTCGCGTCTTTGTTACGA-ATCCATTTCTGCA 17156 ||||| |||| | || ||| | | | || | ||| | ||| ||||| || || Sbjct 1947705 AGCAAATGCGACCACACGCTCGCCAAAGTTAGCCTTCTTGCT-CGAGATCCAGTTAAGCG 1947763 Query 17157 CCCACTCGGCTTTTTGCTTTATGCAATCCATCGTTTCTATGGCCTTAAA 17205 |||| || || || | ||| | ||| | |||||| ||||| ||||| Sbjct 1947764 CCCAGTCTGCCTTCTTCTTCACGCACGGTAGCGTTTCGATGGCATTAAA 1947812 Score = 114 bits (126), Expect = 1e-20 Identities = 176/251 (70%), Gaps = 0/251 (0%) Strand=Plus/Plus Query 17234 ATATACGTATCGATGAGTAGGCTGTACATTTCGGAGTGTATGTTCTCCATGGCTATCTGA 17293 || ||||| ||||| || || |||||| || ||| | ||||||||| || ||||| Sbjct 1947926 ATGTACGTGTCGATCAGCAGCGAGTACATCTCACTGTGGACGTTCTCCATCGCAATCTGG 1947985 Query 17294 AATCCGTAAAAGCATCGGGCTTCCGCTATTTGAACTTCCACGTAGAATCGTTCCGCTAGA 17353 || ||||| ||||| || || |||| || || || ||| | ||| ||||| | ||| Sbjct 1947986 AAGCCGTAGAAGCAGCGCGCCTCCGTTACCTGCACCTCCTGGCTGAACCGTTCGACCAGA 1948045 Query 17354 TTTTCGTTCACGATGCCGTCGCTCGCGGCGAAAAACGCCAATATATGCTTAATGAAATAT 17413 || ||||||||||| |||||| |||||| || || |||| | ||| || |||| Sbjct 1948046 TTCTCGTTCACGATACCGTCGGACGCGGCAAAGAAGGCCAGCACGTGCGAGATAAAATGA 1948105 Query 17414 TTTTCGTCCGGTGTAAGAACGCGCCAGTCCTTTAAATCTTTGGATATATCCACTTCTTCG 17473 |||| |||| | || | ||||||||| | || || |||| || || ||||| Sbjct 1948106 CGTTCGCTCGGTTTTAGCGAGTCCCAGTCCTTCATGTCCTTCGATAGGTCTACCTCTTCC 1948165 Query 17474 GGGGTCCAAAA 17484 |||||| || Sbjct 1948166 ACGGTCCAGAA 1948176 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 517394405522280