Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Anopheles_20stephensi_20[genbank_20GCA_5F000300775.2_202013-07-19] 23,371 sequences; 221,324,304 total letters Query= NC_001266.1 Length=159857 Score E Sequences producing significant alignments: (Bits) Value seq68 113 5e-20 seq24 91.5 2e-13 >seq68 Length=961948 Score = 113 bits (124), Expect = 5e-20 Identities = 193/273 (71%), Gaps = 8/273 (3%) Strand=Plus/Plus Query 118936 TTCATGTATCGTATCTTTCCAAATACGGTACGCTCCTTCCATGCTCTG-TCGTGGAGTCC 118994 |||||||| || ||||| ||||| | | |||||||||||| | ||| ||||| | || Sbjct 663329 TTCATGTACCGAATCTTGCCAAAAATCGCACGCTCCTTCCA-ACCCTGATCGTGTATGCC 663387 Query 118995 TGCTACTGCCCATAGACATCCCACGTATCCGTTGGGATCTGTTCCGTCTA-ACTCGTACT 119053 ||| | | ||| | ||| || ||||| ||||| ||||| || || | ||| |||| Sbjct 663388 TGCGATCGACCACATACAGCCGACGTACCCGTTCGGATCGCGCCCATCCAGACT-GTACC 663446 Query 119054 TATCGTTTAAGTAGATACAGACGCTTAACGCACTT--TCCGGAGTCTTACTCCATTCCAG 119111 ||||| | ||||| | || || || ||| || || || || |||| ||||| Sbjct 663447 GGTCGTTCAGATAGAT--GGCCGTTTCGAGCGCTTCCTCGGGCGTTTTCGTCCACTCCAG 663504 Query 119112 TAtttttttAGCCCAGTACATACGTAAATACCCGTGCATTTTACCCTCGTTAATCATCTG 119171 ||| || || ||||| ||||| || | | | || ||||| || ||||| || | |||||| Sbjct 663505 TATCTTCTTCGCCCAATACATCCGCAGAAAGCCATGCATCTTGCCCTCCTTCACCATCTG 663564 Query 119172 AAGTTGTGCGGTGTTCCATAGAGGATCGTGTGT 119204 || || || | |||||| ||| ||||| || Sbjct 663565 CAGCTGGGCCGCGTTCCACAGATCGTCGTGCGT 663597 >seq24 Length=2206587 Score = 91.5 bits (100), Expect = 2e-13 Identities = 121/168 (72%), Gaps = 0/168 (0%) Strand=Plus/Plus Query 16472 ATATACGTATCAATCAGTAAACTGTACATTTCTGAGTGTATGTTCTCTATGGCTATCTGA 16531 || ||||| || ||||| | |||||| || ||| | |||||| || || ||||| Sbjct 1947926 ATGTACGTGTCGATCAGCAGCGAGTACATCTCACTGTGGACGTTCTCCATCGCAATCTGG 1947985 Query 16532 AATCCATAGAAGCATCGAGCCTCCGCTATTTGTACTTCCACGTAAAATCGTTCCGCCAGG 16591 || || |||||||| || ||||||| || || || ||| | || ||||| |||| Sbjct 1947986 AAGCCGTAGAAGCAGCGCGCCTCCGTTACCTGCACCTCCTGGCTGAACCGTTCGACCAGA 1948045 Query 16592 TTCTCATTCACGATACCGTCACTTGCAGCAAAAAACGCCAATATGTGC 16639 ||||| |||||||||||||| || ||||| || |||| | |||| Sbjct 1948046 TTCTCGTTCACGATACCGTCGGACGCGGCAAAGAAGGCCAGCACGTGC 1948093 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 511264996675720