Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Anopheles_20stephensi_20[genbank_20GCA_5F000300775.2_202013-07-19] 23,371 sequences; 221,324,304 total letters Query= NC_001348.1 Length=124884 Score E Sequences producing significant alignments: (Bits) Value seq66 120 2e-22 >seq66 Length=971934 Score = 120 bits (132), Expect = 2e-22 Identities = 244/353 (69%), Gaps = 12/353 (3%) Strand=Plus/Plus Query 18789 GGGGACCTTGGCCCCATTTACGGCTTCCAGTGGAGACATTTTGGAGCGGAATATAAAGAC 18848 || ||| | || || ||||||| ||||||||| | || ||||| || | || ||| Sbjct 653777 GGTGACTTAGGACCGGTTTACGGTTTCCAGTGGCGCCACTTTGGTGCAGCGTACAAAACA 653836 Query 18849 TGTCAATCAAACTATTT-ACAG--CAAGGAATCGATCAGCTGCAAACTGTTATAGATACA 18905 || || || ||| |||| || |||||||||||| || || || || || || Sbjct 653837 TGCCACG---ACGATTACACAGGGCAGGGAATCGATCAGTTGGCAAAGGTGATCGACACG 653893 Query 18906 ATTAA-AACAAACCCAGAAAG-CCGACGAATGATTAT-ATCGTCTTGGAATCCAAAGGAT 18962 || || ||||| || | | | || || || ||||| | || |||||||||| || Sbjct 653894 ATCAAGAACAATCC--GTACGATCGTCGTATCATTATGAGCG-CTTGGAATCCTTCCGAC 653950 Query 18963 ATCCCCTTAATGGTACTACCTCCATGTCACACGTTATGTCAGTTTTACGTTGCAAACGGT 19022 || ||| | |||| | | || || |||||| || ||||||| |||||| | || Sbjct 653951 ATTCCCATCATGGCATTGCCACCGTGTCACTGTTTGGCACAGTTTTTCGTTGCTGATGGA 654010 Query 19023 GAATTATCCTGCCAAGTATACCAGAGATCGGGGGATATGGGCCTTGGGGTACCGTTCAAC 19082 ||| | |||||||| | || ||| |||||| ||| | || | || || ||||||||| Sbjct 654011 GAACTCTCCTGCCAGATGTATCAGCGATCGGCCGATGTTGGATTGGGCGTGCCGTTCAAC 654070 Query 19083 ATTGCTGGATATGCACTTCTTACCTACATAGTAGCGCATGTTACAGGACTTAA 19135 || ||| | ||| |||| || ||| | || | |||||||| || ||||| || Sbjct 654071 ATCGCTAGCTATTCACTGCTGACCCATATGATCGCGCATGTCACTGGACTGAA 654123 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 399390207652695