Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Anopheles_20stephensi_20[genbank_20GCA_5F000300775.2_202013-07-19] 23,371 sequences; 221,324,304 total letters Query= NC_001350.1 Length=112930 Score E Sequences producing significant alignments: (Bits) Value seq66 116 3e-21 >seq66 Length=971934 Score = 116 bits (128), Expect = 3e-21 Identities = 238/346 (69%), Gaps = 6/346 (2%) Strand=Plus/Minus Query 101752 AGTGACATGAGCAATCATGCAAGTTAAAAGAGAATAGCTAGCAATGTTAAATGGCACTCC 101811 ||||||||| || ||||| || | || ||||||||||| ||||| || ||||| || Sbjct 654115 AGTGACATGCGCGATCATATGGGTCAGCAGTGAATAGCTAGCGATGTTGAACGGCACGCC 654056 Query 101812 TAACCCCATATCAGCTGATCTTTGATACAGTTGACAGGAAAGCTTTCCATCACAGACATA 101871 || || | ||| || |||| ||||||| || ||||| || | ||||||| || | Sbjct 654055 CAATCCAACATCGGCCGATCGCTGATACATCTGGCAGGAGAGTTCTCCATCAGCAACGAA 653996 Query 101872 AAATTGACTTAATACA-TGACAAGGCGGCAACACCATTTTAGGAATGTCTGAAACATTCC 101930 ||| || || ||| ||||| || ||||| |||| | |||||||| ||| ||||| Sbjct 653995 AAACTGTGCCAA-ACAGTGACACGGTGGCAATGCCATGATGGGAATGTCGGAAGGATTCC 653937 Query 101931 AAGCACACATTAACATCCTTCTATCTGTAGGGTTTGTT-TTTATAGTATCAATCAACTGT 101989 |||| | ||| | || | | ||| ||| || ||||| || || || || |||| || | Sbjct 653936 AAGCGCTCATAATGATACGACGATC-GTACGGATTGTTCTTGATCGTGTCGATCACCTTT 653878 Query 101990 TTTAATTGGTCAACTCCTTCTCCTTTATAATCG-CGCCCAACACCTTTATATTCTGCTCC 102048 || || || | ||| | ||| | |||||| || | ||| || |||| || Sbjct 653877 GCCAACTGATCGATTCCCTGCCCTGTGTAATCGTCGTGGCA-TGTTTTGTACGCTGCACC 653819 Query 102049 GAAATGCCTCCACTGAAATCCATACACAGGTCCAAGATCTCCTTCA 102094 || || | |||||| || || || || ||||| | || ||| || Sbjct 653818 AAAGTGGCGCCACTGGAAACCGTAAACCGGTCCTAAGTCACCTACA 653773 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 361148303353121