Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Anopheles_20stephensi_20[genbank_20GCA_5F000300775.2_202013-07-19] 23,371 sequences; 221,324,304 total letters Query= NC_001611.1 Length=185578 Score E Sequences producing significant alignments: (Bits) Value seq59 421 8e-113 seq24 96.9 4e-15 >seq59 Length=1145648 Score = 421 bits (466), Expect = 8e-113 Identities = 1214/1853 (66%), Gaps = 30/1853 (2%) Strand=Plus/Plus Query 52829 GCGGGTTTCGTACGTAGATAGTACATTCCCGTTTTTAGACCGAGACTCCATCCGTAAAAA 52888 || ||||| || || ||||||||||| |||||||| || || | |||| |||||||| Sbjct 140766 GCCGGTTTTGTTCGCAGATAGTACATGCCCGTTTTCAGTCCCATTTTCCAGCCGTAAAAG 140825 Query 52889 TGCATACTTGTTAGTTTGGAATAACTCGGATCTGCTATATGGATATTCATAGATTGACTT 52948 || || ||| || ||| ||| |||| || || | || || || | ||||| Sbjct 140826 TGGATCGATGTCAGCTTGCCATAGTTCGGTTCGGCCACGTGTATGTTGAACGATTGCGAC 140885 Query 52949 TGATCGATGAAGGCTCCCCTGTCTGCAGCCATTTTTATGATCGTCTTTTGTGGAATTTCC 53008 |||||||| || || |||| ||| |||||||| || ||| ||| || | ||| ||| Sbjct 140886 TGATCGATAAACGCACCCCGGTCAGCAGCCATCTTAATGCACGTTTTAACCGAAATCTCC 140945 Query 53009 CAAATAGTTTTATAAAC-TCGCTTAATATCTTCTGGAAGGTTTGTATTCT--GAATAGAT 53065 || | ||||| || | |||| || | |||| | | | || || || |||| ||| Sbjct 140946 CACACCGTTTTGTACAGATCGCGTATTTCCTTCGGTATCGATTCGATGCTTTGAATCGAT 141005 Query 53066 CCACCATCTACCATAATCCTATTCTTGATCTCATCATTCCATAATTTTCTCTCGGTTAAA 53125 || | || ||| ||||| || || || ||| | || | || ||| Sbjct 141006 CCGTTGTTGGACAGAATTTGGTTCTTCATGTCTAGATCCCACAGACCCATCGCTGTCAAA 141065 Query 53126 ACTCTAAGGAGATGCGGATTAACTACTTGAAATTCTCCAGACAATACTCTCCGAGTGTAA 53185 || || ||||| | || || || ||||| || || || | ||| | |||| ||||| Sbjct 141066 TCTTGCAGCAGATGGTGGTTCACCACCTGAAACTCGCCGGAAAGTACACGCCGATTGTAA 141125 Query 53186 ATATTACTGGTATACGGTTCCACAGACTCATTATTTCCCAAAATTTGAGCAGTTGATGCA 53245 | || || |||||||| | ||||| || || ||||| ||||| || || || || Sbjct 141126 ACGTTGGACGTGTACGGTTCGAAGGACTCGTTGTTACCCAAGATTTGTGCCGTCGAAGCG 141185 Query 53246 GTCGGCATAGGTGCCACCAATAAACTATTTCTAAGACCGTATGTTCTGATTTTATCTTTT 53305 || ||||| ||||||| || | ||| | | |||| || ||||| || || Sbjct 141186 GTAGGCATCGGTGCCAACAGCAGCGAATTGCGGATGCCGTGCTTTGCAATTTTTTCCTTC 141245 Query 53306 AGAGGTTCCCAATTCCAAAGATCCGACGGTACAACNNNNNNNNNNNNNNNTTGTAGAATA 53365 | ||||||||||||||||||||||| | || || || Sbjct 141246 AACTCGGCCCAATTCCAAAGATCCGACGGTTCCTTCTTCCACATTTCGTACTGCAGGATG 141305 Query 53366 CCGTTACTGGC-GTACGATCCTACATATGTATCGTATGGTCCTTCCTTCTCAGCTAGTTC 53424 || || || | | || ||| | || || ||||| ||||| || | || | || Sbjct 141306 CCTTTGCTTACCGGACTC-CCTTCGTACGTTTCGTACGGTCCGTCGCGGGCGGCCAACTC 141364 Query 53425 ACAACTCGCCTCTAATGCACCGTAATAAATGGTTTCGAAGATCTTCTTATTTAGATCTTG 53484 ||| ||||| || ||||| ||||| || || |||||||| || | | || || | ||| Sbjct 141365 ACAGCTCGCTTCCAATGCTCCGTAGTAGATTGTTTCGAAAATTTGTTGGTTCAGCTTTTG 141424 Query 53485 TGCTTCCAGGCTATCAAATGGATAATTTAAGAGAATAAACGCGTCTGCTAATCCTTGAAC 53544 || ||| ||| || | ||||| | | ||| ||||| || || | || ||||| Sbjct 141425 GGCCTCCTCGCTTTCGTACGGATAGCGCATCAAAATGAACGCATCGGCCATGCCCTGAAC 141484 Query 53545 ACCAATACCGATAGGTCTATGTCTCTTATTAGAGATTTCAGCTTCTGGAATAGGATAATA 53604 ||| |||||||| || || || | | | || ||| | || || || | ||||| || Sbjct 141485 ACCGATACCGATCGGCCTGTGCCGCATGTTGGAGCGCTTCGCCTCCGGTACTGGATAGTA 141544 Query 53605 ATTAATATCTATAATTTTATTGAGGTTTCT-GACAATTACTTTGACCACATCCTTCAGTT 53663 || ||||| |||||||| || || || | | ||| ||| | | ||||||||||| | Sbjct 141545 GTTTATATCGATAATTTTGTTCAGATTGCGCGTCAAAATCTTCG-CGACATCCTTCAGCT 141603 Query 53664 TGAGAAAATCAAA----TTGTCCATCTATTACAAACATGTTCAATGCAATAGATGCCAGA 53719 || ||| || | |||||| | | ||||||||||||| || || || |||| | Sbjct 141604 TGGCAAAGTCGTACGTTTTGTCCGGTT-TCACAAACATGTTCAGCGCGATCGAGGCCAAA 141662 Query 53720 TTACAAACGGCTACCTCATTAGCATC--CGCATATTGTATTATCTCAGTGCAAAGATTAC 53777 || || || |||| |||| | || || || | | |||||| || || ||||| Sbjct 141663 TTGCACACCGCTATTTCATC--CTTCGACGAGTACTCCACTATCTCGGTACACAGATTGG 141720 Query 53778 TACACTTGATGGTTCCTAAATTTTGTTGATTACTCTTTTTGTTACACGCATCCTTATAAA 53837 |||||| ||||| || | || || ||||| ||||| ||| ||||||||||| || | Sbjct 141721 AACACTTTATGGTGCCGATGTTCTGCTGATTGCTCTTGCGGTTGCACGCATCCTTGTACA 141780 Query 53838 GAATGAATGGCGTACCAGTTTCAATCTGGGATTCTATAATCGCTTTCCAGACGACACGAG 53897 | ||| | || || ||||| | ||| ||||| || || || ||| | | | | | Sbjct 141781 GCATGTACGGAACGCCCGTTTCCACCTGCGATTCGATGATGGCAAACCATAGGTCCTGTG 141840 Query 53898 CCTTTATTATAGATTTGTATCTCTTTTCTCTT--TCGTAT--AGTGTATACAATCGTTCA 53953 |||| | | | || || ||| | ||||| |||||| | || || Sbjct 141841 CCTTCACCT--GGCGTATAAATCGACCCTCCTGCTCGTACCCAGTGTACAGCTTC--TCG 141896 Query 53954 AACTCGTCTCCCCAAACATTGTCCAATCCAGGACATTCATCCGGACACATCAACGACCAC 54013 ||||| || |||||| | ||||||| || || || | || ||||||| |||| Sbjct 141897 AACTCTTCGCCCCAAGTGTCAGCCAATCCGGGGCAGTCGTGTGGGCACATCAGGCTCCAC 141956 Query 54014 TCTCCGTCATCCTTCACTCGTTTCATAAAGAGATCAGGAATCCAAAGAGCTATAAATAGA 54073 | ||| ||| ||| || | ||| || ||||| || ||||| || || || | Sbjct 141957 ATTTCGTTCGCCTCCACACGCTGCATGAACAGATCCGGGATCCACAGGGCGTAGAACATG 142016 Query 54074 TCTCTGGTTCTATGTTCCTCGTTTCCTGTATTCTTTTTAAGATCGAGGAACGCCATAATA 54133 || | || | ||||| || || || || || || ||||| || ||| | | ||| Sbjct 142017 TCGCGGGCACGCACCTCCTCCTTGCCGGTGTTTTTCTTCAGATCCAGAAACTCGAATATA 142076 Query 54134 TCAGAATGCCACGGTTCCAAGTATATGGTCATAACTCCAGGCCGTTTGTTTCCTCCCTGA 54193 || ||||| ||||| | ||| |||| | | || ||||| ||||| || |||||| Sbjct 142077 TCCCCGTGCCATGGTTCGAGGTAGATGGCAAAGGCGCCGGGCCGCTTGTTGCCACCCTGA 142136 Query 54194 TCTATGTATCTAGCGGTGTTATTATAAACTCTCAACATTGGAATAATACCATTGGATGCA 54253 || | ||| | || ||||| || ||||| | || ||| || | | || || || Sbjct 142137 TCCACGTACCGGGCCGTGTTGTTGTAAACGCGCAGCATCGGCACCAACCCGTTCGAAATC 142196 Query 54254 CCATTGGTCCCGGAGATATAGCTTCCACTGGCACGAAT--ATTACTAATTGATAGACCTA 54311 ||||| || |||||||| || |||| |||| ||||| | | | || | | || | Sbjct 142197 CCATTCGTGCCGGAGATGTACGTTCCTTTGGCGCGAATGCAGTGCACGTTCA--GCCCGA 142254 Query 54312 TCCCCCCTGCCATTTTAGAGATTAATGCGCATCGTTTTAACGTATCATAGATGCCCTCTA 54371 | || || ||| ||| || || | ||| || | |||| |||||| || || ||||| | Sbjct 142255 TACCGCCGGCCGATTTGGAAATCAGTGCACACTGCTTTAGCGTATCGTAAATACCCTCAA 142314 Query 54372 TACTATCATCCATCATGTTAAGTAGAAAACAGCTAGACATTTGGTGACGACTAGTTCCCG 54431 |||| || ||| |||| |||| ||||| || || | || |||| || | | Sbjct 142315 TACTGTCGTCCGACATGGTAAGCAGAAAGCAAGACGAAAGCTGCGGACGCTGCGTAGCGG 142374 Query 54432 CATTAAATAAGGTAGGAGAAGCGTGCGTAAACCATTTTTCAGAAAGTAGATTGTACGTCT 54491 | ||| | ||| || || || || ||||| | || ||||| ||||||||||||| Sbjct 142375 CCGCAAACATGGTCGGTGAGGCATGGGTAAAGTAGCGCTCGGAAAGCAGATTGTACGTCT 142434 Query 54492 CGATAGCTGAGTCTATATC-CCATTGATGAATTCCTACTGCGACACGCATTAACATGTGC 54550 |||| || | || || || || | ||||| || | || || ||||| | |||||| Sbjct 142435 CGATGGCAGCATCAATGTCTTCACCG-TGAATACCGATGGCAACGCGCATCAGCATGTGT 142493 Query 54551 TGAGGTCTTTCAACGATCTTGTTGTTTATTTTCAGCAAGTAGGATTTTTCCAAAGTTTTA 54610 || |||| || || ||||| || || |||||||| ||||| |||| ||||| Sbjct 142494 TGCGGTCGCTCCACAATCTTACCCTTGATCTTCAGCAAATAGGAACGCTCCAGTGTTTTG 142553 Query 54611 AAACCAAAATAGTTGTATGAAAAGTCTCGTTCGTAAATAATAACTGAGTTGAG 54663 || || ||||||||||| || || || |||||||| || | ||||| || Sbjct 142554 AAGCCGAAATAGTTGTACCCGAAATCACGGTCGTAAATGATGGCCGAGTTCAG 142606 >seq24 Length=2206587 Score = 96.9 bits (106), Expect = 4e-15 Identities = 177/258 (69%), Gaps = 5/258 (2%) Strand=Plus/Plus Query 24123 TTAAACATCAAACATGCGAAATCGCAGTGTAGACCCTCGTCTCTACTAATTAATTCGTTG 24182 || ||||||| || |||||||| || || | |||||||| || ||| | ||||| Sbjct 1947559 TTGAACATCAGGCAGGCGAAATCACAATGCAATCCCTCGTCCCTCGAAATCAGCTCGTTC 1947618 Query 24183 GAAAACGTGAGTCCGGGCATTAGGCCACGCTTTTTAAGCCAAAATATGGACGCAAATGAT 24242 || || || || || ||||| ||||||||||| || ||||| || ||||||||||| Sbjct 1947619 GAGAAGGTAAGACCCGGCATAAGGCCACGCTTCTTGAGCCAGAAGATGGACGCAAAGCTG 1947678 Query 24243 CCAGAAAAGAAAATTCCTTCTACTGCCGCAAAGGCAATAAGTCTTTCTCCA----TAACC 24298 || ||||| || || || || || ||||| || | | | || ||| || || Sbjct 1947679 CCGCTGAAGAAGATACCCTCGACGGCAGCAAATGCGACCACACGCTCGCCAAAGTTAGCC 1947738 Query 24299 GGCGCTGTCATGTATCCACTTTTGAGCCCAATCGGCCTTCTTTTTTACACAAGGCATTGT 24358 | || | ||||| || | ||||| || |||||||| || || || || | || Sbjct 1947739 TTCTTGCTCGAG-ATCCAGTTAAGCGCCCAGTCTGCCTTCTTCTTCACGCACGGTAGCGT 1947797 Query 24359 CTCTATAGCATTAAAGAG 24376 || || |||||||| || Sbjct 1947798 TTCGATGGCATTAAACAG 1947815 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 593548151656080