Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Anopheles_20stephensi_20[genbank_20GCA_5F000300775.2_202013-07-19] 23,371 sequences; 221,324,304 total letters Query= NC_001973.1 Length=161046 Score E Sequences producing significant alignments: (Bits) Value seq24 253 2e-62 seq6 145 8e-30 seq1 123 3e-23 seq57 113 5e-20 seq20 109 6e-19 >seq24 Length=2206587 Score = 253 bits (280), Expect = 2e-62 Identities = 320/440 (73%), Gaps = 0/440 (0%) Strand=Plus/Minus Query 116946 TGTTGAACGCCATCGAGACGATGCCGTGCGTCAAAGAGAAGGCCGAGTGGGCGCTGCGCT 117005 |||| || |||||||| ||| | |||||||| || ||||||| || |||||||| || Sbjct 1947814 TGTTTAATGCCATCGAAACGCTACCGTGCGTGAAGAAGAAGGCAGACTGGGCGCTTAACT 1947755 Query 117006 GGATCGCCGGCAGAGAGGCCGCCTTCGGCGAGCGCCTGGTGGCCTTCGCGGCCGTCGAGG 117065 ||||| | ||| |||| ||| |||||||| |||| || || || |||||||||| Sbjct 1947754 GGATCTCGAGCAAGAAGGCTAACTTTGGCGAGCGTGTGGTCGCATTTGCTGCCGTCGAGG 1947695 Query 117066 GCGTCTTCTTTTCGGGCAGTTTCGCCGCCATATTTTGGCTCAAGAAACGCGGCCTCATGC 117125 | ||||||| ||||| || || |||| || ||||||||||| || ||||| |||| Sbjct 1947694 GTATCTTCTTCAGCGGCAGCTTTGCGTCCATCTTCTGGCTCAAGAAGCGTGGCCTTATGC 1947635 Query 117126 CCGGCCTGACTTTCAGCAACGAGCTCATCTCCAGGGACGAGGGTCTGCATTGCGACTTTG 117185 | || || || ||| |||||||| || || ||||||||||| ||||||| || || | Sbjct 1947634 CGGGTCTTACCTTCTCGAACGAGCTGATTTCGAGGGACGAGGGATTGCATTGTGATTTCG 1947575 Query 117186 CCTGTTTGCTGTTCAAGCATTTGGTGCAGCGACCGAGCGCGGCGCGCGTCAGGGAGATCG 117245 |||| || |||||||| || |||||||| || || |||||| | ||||||| Sbjct 1947574 CCTGCCTGATGTTCAAGTATCTGGTGCAGAAGCCTTCGAAGGAGCGCGTGACGGAGATCA 1947515 Query 117246 TCACCGACGCGGTCGCCATCGAGCAGCGCTTCCTCACCGAAGCGCTGCCGGTGCGTCTGC 117305 || ||| ||||| | |||||||| || | || |||| |||||||| | ||| Sbjct 1947514 TCCGCGATGCGGTAGTGATCGAGCAAGAATTTTTGACGAAAGCCCTGCCGGTCGATATGC 1947455 Query 117306 TGGGACTCAATTGCGAAACGATGTCGCAATACATCGAGTTCGTCGCCGACAGGCTGCTGC 117365 | || | ||||| || ||||||||| ||||| ||||| || || || | |||||| Sbjct 1947454 TCGGCATGAATTGTGATCTGATGTCGCAGTACATTGAGTTTGTGGCGGATCGTTTGCTGC 1947395 Query 117366 TCGAGCTGGTCGGCGCCAAG 117385 | ||| ||| | | | |||| Sbjct 1947394 TGGAGTTGGGCTGTGACAAG 1947375 Score = 230 bits (254), Expect = 2e-55 Identities = 211/264 (80%), Gaps = 2/264 (1%) Strand=Plus/Minus Query 116655 AGGCCGAGGCGTCGTTCTGGACCGTCGAGGAGGTGGACCTGTCCAAGGACACGAGCGACT 116714 |||| || || |||||||||||||| || ||||| ||||| || ||||||| || |||| Sbjct 1948190 AGGCTGAAGCATCGTTCTGGACCGTGGAAGAGGTAGACCTATCGAAGGACATGAAGGACT 1948131 Query 116715 GGGAG-CGCTTGAACGACAACGAGCGCCATTTCATCAAGCACGTGCTGGCCTTTTTCGCC 116773 |||| |||| ||| | ||| || ||||| ||| ||||||||||||||| || ||| Sbjct 1948130 GGGACTCGCTAAAACCG-AGCGAACGTCATTTTATCTCGCACGTGCTGGCCTTCTTTGCC 1948072 Query 116774 GCCAGCGACGGCATCGTCAACGAGAATCTGGTCGAGCGTTTCGCTCAGGAGGTGCAGGTG 116833 || |||||| ||||| ||||||||||||||||| || ||| |||||||||||||| Sbjct 1948071 GCGTCCGACGGTATCGTGAACGAGAATCTGGTCGAACGGTTCAGCCAGGAGGTGCAGGTA 1948012 Query 116834 GCCGAGGCGCGGTGCTTCTACGGCTTTCAGATCGCCATGGAGAACGTGCACTCGGAAATG 116893 | |||||||| |||||||||||||| ||||| || ||||||||||| ||| || ||| Sbjct 1948011 ACGGAGGCGCGCTGCTTCTACGGCTTCCAGATTGCGATGGAGAACGTCCACAGTGAGATG 1947952 Query 116894 TATTCGACCCTCATCGACACGTAC 116917 || ||| || |||||||||||| Sbjct 1947951 TACTCGCTGCTGATCGACACGTAC 1947928 >seq6 Length=4219845 Score = 145 bits (160), Expect = 8e-30 Identities = 177/236 (75%), Gaps = 8/236 (3%) Strand=Plus/Minus Query 40687 AAAATGCAAATATTCGTAAAAACGCTCACGGGCAAAACCATCACCGTCGACGTCGAAGCC 40746 || ||||| || ||||| ||||| |||||||| || ||||| || | || ||||| ||| Sbjct 2101148 AAGATGCAGATCTTCGTCAAAACCCTCACGGGTAAGACCATTACTCTTGAGGTCGA-GCC 2101090 Query 40747 ACCG---AC-AGCGTGCAAACGCTCAAGGAAAAAATTCTCGACAAAGAGGGCATCCCCGC 40802 | || || | || | || | | |||| || || | ||||| ||||||||||| | Sbjct 2101089 ATCGGATACGATCGAG--AATG-TGAAGGCGAAGATCCAGGACAAGGAGGGCATCCCGCC 2101033 Query 40803 GGACCAGCAACGACTCATCTACGCGGGCAAACAGCTGGACGACGAGCGCACCCTCAACGA 40862 ||| ||||| || || |||| ||| || || |||||||| |||| |||||||| ||| Sbjct 2101032 GGATCAGCAGCGTCTGATCTTCGCCGGTAAGCAGCTGGAGGACGGACGCACCCTGTCCGA 2100973 Query 40863 CTACAACATCCAGAAGGAGGCCACGCTGCATCTAGTGTTGCGCTTGAGGGGCGGCG 40918 ||||||||||||||||||| | || || ||||| ||| | ||| || | || |||| Sbjct 2100972 CTACAACATCCAGAAGGAGTCGACCCTTCATCTGGTGCTTCGCCTGCGCGGTGGCG 2100917 >seq1 Length=5975090 Score = 123 bits (136), Expect = 3e-23 Identities = 155/210 (74%), Gaps = 2/210 (1%) Strand=Plus/Plus Query 40690 ATGCAAATATTCGTAAAAACGCTCACGGGCAAAACCATCACCGTCGACGTCGAAGCCA-C 40748 ||||| || ||||| || || || || || || ||||||||| |||| || || |||| | Sbjct 5042934 ATGCAGATCTTCGTCAAGACTCTGACCGGAAAGACCATCACCCTCGAGGTTGA-GCCATC 5042992 Query 40749 CGACAGCGTGCAAACGCTCAAGGAAAAAATTCTCGACAAAGAGGGCATCCCCGCGGACCA 40808 ||||| | | | | | |||| || |||| ||||| ||||| ||||| | || || Sbjct 5042993 CGACACCATCGAGAATGTGAAGGCCAAGATTCAGGACAAGGAGGGAATCCCGCCAGATCA 5043052 Query 40809 GCAACGACTCATCTACGCGGGCAAACAGCTGGACGACGAGCGCACCCTCAACGACTACAA 40868 ||| || || |||| || ||||| |||||||| || | |||||||| ||||| || Sbjct 5043053 GCAGCGTCTGATCTTTGCCGGCAAGCAGCTGGAAGATGGCCGCACCCTGTCGGACTATAA 5043112 Query 40869 CATCCAGAAGGAGGCCACGCTGCATCTAGT 40898 |||||||||||| |||| || ||||| || Sbjct 5043113 CATCCAGAAGGAATCCACCCTCCATCTGGT 5043142 Score = 123 bits (136), Expect = 3e-23 Identities = 155/210 (74%), Gaps = 2/210 (1%) Strand=Plus/Plus Query 40690 ATGCAAATATTCGTAAAAACGCTCACGGGCAAAACCATCACCGTCGACGTCGAAGCCA-C 40748 ||||| || ||||| || || || || || || ||||||||| |||| || || |||| | Sbjct 5043162 ATGCAGATCTTCGTCAAGACTCTGACCGGAAAGACCATCACCCTCGAGGTTGA-GCCATC 5043220 Query 40749 CGACAGCGTGCAAACGCTCAAGGAAAAAATTCTCGACAAAGAGGGCATCCCCGCGGACCA 40808 ||||| | | | | | |||| || |||| ||||| ||||| ||||| | || || Sbjct 5043221 CGACACCATCGAGAATGTGAAGGCCAAGATTCAGGACAAGGAGGGAATCCCGCCAGATCA 5043280 Query 40809 GCAACGACTCATCTACGCGGGCAAACAGCTGGACGACGAGCGCACCCTCAACGACTACAA 40868 ||| || || |||| || ||||| |||||||| || | |||||||| ||||| || Sbjct 5043281 GCAGCGTCTGATCTTTGCTGGCAAGCAGCTGGAAGATGGCCGCACCCTGTCGGACTATAA 5043340 Query 40869 CATCCAGAAGGAGGCCACGCTGCATCTAGT 40898 |||||||||||| |||| || ||||| || Sbjct 5043341 CATCCAGAAGGAATCCACCCTCCATCTGGT 5043370 Score = 116 bits (128), Expect = 4e-21 Identities = 155/213 (73%), Gaps = 2/213 (1%) Strand=Plus/Plus Query 40687 AAAATGCAAATATTCGTAAAAACGCTCACGGGCAAAACCATCACCGTCGACGTCGAAGCC 40746 || |||||||| ||||| || || || || || || || |||||| | || || || ||| Sbjct 5042703 AACATGCAAATCTTCGTCAAGACTCTGACCGGAAAGACTATCACCCTTGAGGTTGA-GCC 5042761 Query 40747 A-CCGACAGCGTGCAAACGCTCAAGGAAAAAATTCTCGACAAAGAGGGCATCCCCGCGGA 40805 | |||||| | | | | | |||| || |||| ||||| ||||| ||||| | || Sbjct 5042762 ATCCGACACCATCGAGAATGTGAAGGCCAAGATTCAGGACAAGGAGGGAATCCCGCCAGA 5042821 Query 40806 CCAGCAACGACTCATCTACGCGGGCAAACAGCTGGACGACGAGCGCACCCTCAACGACTA 40865 ||||| || || |||| || || || |||||||| || | |||||||| ||||| Sbjct 5042822 TCAGCAGCGTCTGATCTTTGCTGGTAAGCAGCTGGAAGATGGCCGCACCCTGTCGGACTA 5042881 Query 40866 CAACATCCAGAAGGAGGCCACGCTGCATCTAGT 40898 |||||||||||||| |||| || ||||| || Sbjct 5042882 TAACATCCAGAAGGAATCCACCCTCCATCTGGT 5042914 >seq57 Length=1190389 Score = 113 bits (124), Expect = 5e-20 Identities = 154/215 (72%), Gaps = 0/215 (0%) Strand=Plus/Minus Query 40690 ATGCAAATATTCGTAAAAACGCTCACGGGCAAAACCATCACCGTCGACGTCGAAGCCACC 40749 ||||| || ||||| ||||| ||||| ||||| |||||||| | || ||||| | | Sbjct 631524 ATGCAGATTTTCGTGAAAACACTCACCGGCAAGACCATCACACTTGAGGTCGAGCCTTCG 631465 Query 40750 GACAGCGTGCAAACGCTCAAGGAAAAAATTCTCGACAAAGAGGGCATCCCCGCGGACCAG 40809 |||| | | | | |||| || || | || || || || || || | || ||| Sbjct 631464 GACACGATCGAGAATGTGAAGGCCAAGATCCAGGATAAGGAAGGAATTCCTCCAGATCAG 631405 Query 40810 CAACGACTCATCTACGCGGGCAAACAGCTGGACGACGAGCGCACCCTCAACGACTACAAC 40869 || || ||||||| ||| ||||| |||||||| || | |||||||| ||||||||| Sbjct 631404 CAGCGTCTCATCTTCGCCGGCAAGCAGCTGGAGGATGGTCGCACCCTGTCGGACTACAAC 631345 Query 40870 ATCCAGAAGGAGGCCACGCTGCATCTAGTGTTGCG 40904 || |||||||| | || || ||||| ||| |||| Sbjct 631344 ATTCAGAAGGAATCTACCCTTCATCTGGTGCTGCG 631310 >seq20 Length=2346360 Score = 109 bits (120), Expect = 6e-19 Identities = 148/204 (73%), Gaps = 2/204 (1%) Strand=Plus/Minus Query 40690 ATGCAAATATTCGTAAAAACGCTCACGGGCAAAACCATCACCGTCGACGTCGAAGCCACC 40749 ||||| || ||||| || ||||| || ||||| |||||||| | || ||||| | | Sbjct 834516 ATGCAGATCTTCGTGAAGACGCTGACTGGCAAGACCATCACGCTGGAGGTCGAGCCGTCG 834457 Query 40750 GACAGCGTGCA-AACGCTCAAGGAAAAAATTCTCGACAAAGAGGGCATCCCCGCGGACCA 40808 |||| | | |||| | |||| || || | ||||| ||||| || || | || || Sbjct 834456 GACACGATCGAGAACG-TGAAGGCTAAGATCCAGGACAAGGAGGGTATTCCTCCAGATCA 834398 Query 40809 GCAACGACTCATCTACGCGGGCAAACAGCTGGACGACGAGCGCACCCTCAACGACTACAA 40868 ||| || | |||| ||| || || |||||||| |||| || || || ||||||||| Sbjct 834397 GCAGCGTTTGATCTTCGCCGGAAAGCAGCTGGAGGACGGTCGTACTCTGTCCGACTACAA 834338 Query 40869 CATCCAGAAGGAGGCCACGCTGCA 40892 ||||||||||||| | || ||||| Sbjct 834337 CATCCAGAAGGAGTCGACCCTGCA 834314 Score = 109 bits (120), Expect = 6e-19 Identities = 148/204 (73%), Gaps = 2/204 (1%) Strand=Plus/Minus Query 40690 ATGCAAATATTCGTAAAAACGCTCACGGGCAAAACCATCACCGTCGACGTCGAAGCCACC 40749 ||||| || ||||| || ||||| || ||||| |||||||| | || ||||| | | Sbjct 834744 ATGCAGATCTTCGTGAAGACGCTGACTGGCAAGACCATCACGCTGGAGGTCGAGCCGTCG 834685 Query 40750 GACAGCGTGCA-AACGCTCAAGGAAAAAATTCTCGACAAAGAGGGCATCCCCGCGGACCA 40808 |||| | | |||| | |||| || || | ||||| ||||| || || | || || Sbjct 834684 GACACGATCGAGAACG-TGAAGGCTAAGATCCAGGACAAGGAGGGTATTCCTCCAGATCA 834626 Query 40809 GCAACGACTCATCTACGCGGGCAAACAGCTGGACGACGAGCGCACCCTCAACGACTACAA 40868 ||| || | |||| ||| || || |||||||| |||| || || || ||||||||| Sbjct 834625 GCAGCGTTTGATCTTCGCCGGAAAGCAGCTGGAGGACGGACGTACTCTGTCCGACTACAA 834566 Query 40869 CATCCAGAAGGAGGCCACGCTGCA 40892 ||||||||||||| | || ||||| Sbjct 834565 CATCCAGAAGGAGTCGACCCTGCA 834542 Score = 107 bits (118), Expect = 2e-18 Identities = 150/205 (73%), Gaps = 4/205 (2%) Strand=Plus/Minus Query 40690 ATGCAAATATTCGTAAAAACGCTCACGGGCAAAACCATCACCGTCGACGTCGAAGCCACC 40749 ||||| || ||||| || ||||| || ||||| |||||||| | || ||||| |||| | Sbjct 834972 ATGCAGATCTTCGTGAAGACGCTGACTGGCAAGACCATCACGCTGGAGGTCGA-GCCATC 834914 Query 40750 G-ACAGCGTGCA-AACGCTCAAGGAAAAAATTCTCGACAAAGAGGGCATCCCCGCGGACC 40807 | ||| | | |||| | |||| || || | ||||| ||||| || || | || | Sbjct 834913 GGACACGATCGAGAACG-TGAAGGCTAAGATCCAGGACAAGGAGGGTATTCCTCCAGATC 834855 Query 40808 AGCAACGACTCATCTACGCGGGCAAACAGCTGGACGACGAGCGCACCCTCAACGACTACA 40867 |||| || | |||| ||| || || |||||||| || | || || || |||||||| Sbjct 834854 AGCAGCGTTTGATCTTCGCCGGAAAGCAGCTGGAGGATGGTCGTACTCTGTCCGACTACA 834795 Query 40868 ACATCCAGAAGGAGGCCACGCTGCA 40892 |||||||||||||| | || ||||| Sbjct 834794 ACATCCAGAAGGAGTCGACCCTGCA 834770 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 515068685150960