Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Anopheles_20stephensi_20[genbank_20GCA_5F000300775.2_202013-07-19]
23,371 sequences; 221,324,304 total letters
Query= NC_001973.1
Length=161046
Score E
Sequences producing significant alignments: (Bits) Value
seq24 253 2e-62
seq6 145 8e-30
seq1 123 3e-23
seq57 113 5e-20
seq20 109 6e-19
>seq24
Length=2206587
Score = 253 bits (280), Expect = 2e-62
Identities = 320/440 (73%), Gaps = 0/440 (0%)
Strand=Plus/Minus
Query 116946 TGTTGAACGCCATCGAGACGATGCCGTGCGTCAAAGAGAAGGCCGAGTGGGCGCTGCGCT 117005
|||| || |||||||| ||| | |||||||| || ||||||| || |||||||| ||
Sbjct 1947814 TGTTTAATGCCATCGAAACGCTACCGTGCGTGAAGAAGAAGGCAGACTGGGCGCTTAACT 1947755
Query 117006 GGATCGCCGGCAGAGAGGCCGCCTTCGGCGAGCGCCTGGTGGCCTTCGCGGCCGTCGAGG 117065
||||| | ||| |||| ||| |||||||| |||| || || || ||||||||||
Sbjct 1947754 GGATCTCGAGCAAGAAGGCTAACTTTGGCGAGCGTGTGGTCGCATTTGCTGCCGTCGAGG 1947695
Query 117066 GCGTCTTCTTTTCGGGCAGTTTCGCCGCCATATTTTGGCTCAAGAAACGCGGCCTCATGC 117125
| ||||||| ||||| || || |||| || ||||||||||| || ||||| ||||
Sbjct 1947694 GTATCTTCTTCAGCGGCAGCTTTGCGTCCATCTTCTGGCTCAAGAAGCGTGGCCTTATGC 1947635
Query 117126 CCGGCCTGACTTTCAGCAACGAGCTCATCTCCAGGGACGAGGGTCTGCATTGCGACTTTG 117185
| || || || ||| |||||||| || || ||||||||||| ||||||| || || |
Sbjct 1947634 CGGGTCTTACCTTCTCGAACGAGCTGATTTCGAGGGACGAGGGATTGCATTGTGATTTCG 1947575
Query 117186 CCTGTTTGCTGTTCAAGCATTTGGTGCAGCGACCGAGCGCGGCGCGCGTCAGGGAGATCG 117245
|||| || |||||||| || |||||||| || || |||||| | |||||||
Sbjct 1947574 CCTGCCTGATGTTCAAGTATCTGGTGCAGAAGCCTTCGAAGGAGCGCGTGACGGAGATCA 1947515
Query 117246 TCACCGACGCGGTCGCCATCGAGCAGCGCTTCCTCACCGAAGCGCTGCCGGTGCGTCTGC 117305
|| ||| ||||| | |||||||| || | || |||| |||||||| | |||
Sbjct 1947514 TCCGCGATGCGGTAGTGATCGAGCAAGAATTTTTGACGAAAGCCCTGCCGGTCGATATGC 1947455
Query 117306 TGGGACTCAATTGCGAAACGATGTCGCAATACATCGAGTTCGTCGCCGACAGGCTGCTGC 117365
| || | ||||| || ||||||||| ||||| ||||| || || || | ||||||
Sbjct 1947454 TCGGCATGAATTGTGATCTGATGTCGCAGTACATTGAGTTTGTGGCGGATCGTTTGCTGC 1947395
Query 117366 TCGAGCTGGTCGGCGCCAAG 117385
| ||| ||| | | | ||||
Sbjct 1947394 TGGAGTTGGGCTGTGACAAG 1947375
Score = 230 bits (254), Expect = 2e-55
Identities = 211/264 (80%), Gaps = 2/264 (1%)
Strand=Plus/Minus
Query 116655 AGGCCGAGGCGTCGTTCTGGACCGTCGAGGAGGTGGACCTGTCCAAGGACACGAGCGACT 116714
|||| || || |||||||||||||| || ||||| ||||| || ||||||| || ||||
Sbjct 1948190 AGGCTGAAGCATCGTTCTGGACCGTGGAAGAGGTAGACCTATCGAAGGACATGAAGGACT 1948131
Query 116715 GGGAG-CGCTTGAACGACAACGAGCGCCATTTCATCAAGCACGTGCTGGCCTTTTTCGCC 116773
|||| |||| ||| | ||| || ||||| ||| ||||||||||||||| || |||
Sbjct 1948130 GGGACTCGCTAAAACCG-AGCGAACGTCATTTTATCTCGCACGTGCTGGCCTTCTTTGCC 1948072
Query 116774 GCCAGCGACGGCATCGTCAACGAGAATCTGGTCGAGCGTTTCGCTCAGGAGGTGCAGGTG 116833
|| |||||| ||||| ||||||||||||||||| || ||| ||||||||||||||
Sbjct 1948071 GCGTCCGACGGTATCGTGAACGAGAATCTGGTCGAACGGTTCAGCCAGGAGGTGCAGGTA 1948012
Query 116834 GCCGAGGCGCGGTGCTTCTACGGCTTTCAGATCGCCATGGAGAACGTGCACTCGGAAATG 116893
| |||||||| |||||||||||||| ||||| || ||||||||||| ||| || |||
Sbjct 1948011 ACGGAGGCGCGCTGCTTCTACGGCTTCCAGATTGCGATGGAGAACGTCCACAGTGAGATG 1947952
Query 116894 TATTCGACCCTCATCGACACGTAC 116917
|| ||| || ||||||||||||
Sbjct 1947951 TACTCGCTGCTGATCGACACGTAC 1947928
>seq6
Length=4219845
Score = 145 bits (160), Expect = 8e-30
Identities = 177/236 (75%), Gaps = 8/236 (3%)
Strand=Plus/Minus
Query 40687 AAAATGCAAATATTCGTAAAAACGCTCACGGGCAAAACCATCACCGTCGACGTCGAAGCC 40746
|| ||||| || ||||| ||||| |||||||| || ||||| || | || ||||| |||
Sbjct 2101148 AAGATGCAGATCTTCGTCAAAACCCTCACGGGTAAGACCATTACTCTTGAGGTCGA-GCC 2101090
Query 40747 ACCG---AC-AGCGTGCAAACGCTCAAGGAAAAAATTCTCGACAAAGAGGGCATCCCCGC 40802
| || || | || | || | | |||| || || | ||||| ||||||||||| |
Sbjct 2101089 ATCGGATACGATCGAG--AATG-TGAAGGCGAAGATCCAGGACAAGGAGGGCATCCCGCC 2101033
Query 40803 GGACCAGCAACGACTCATCTACGCGGGCAAACAGCTGGACGACGAGCGCACCCTCAACGA 40862
||| ||||| || || |||| ||| || || |||||||| |||| |||||||| |||
Sbjct 2101032 GGATCAGCAGCGTCTGATCTTCGCCGGTAAGCAGCTGGAGGACGGACGCACCCTGTCCGA 2100973
Query 40863 CTACAACATCCAGAAGGAGGCCACGCTGCATCTAGTGTTGCGCTTGAGGGGCGGCG 40918
||||||||||||||||||| | || || ||||| ||| | ||| || | || ||||
Sbjct 2100972 CTACAACATCCAGAAGGAGTCGACCCTTCATCTGGTGCTTCGCCTGCGCGGTGGCG 2100917
>seq1
Length=5975090
Score = 123 bits (136), Expect = 3e-23
Identities = 155/210 (74%), Gaps = 2/210 (1%)
Strand=Plus/Plus
Query 40690 ATGCAAATATTCGTAAAAACGCTCACGGGCAAAACCATCACCGTCGACGTCGAAGCCA-C 40748
||||| || ||||| || || || || || || ||||||||| |||| || || |||| |
Sbjct 5042934 ATGCAGATCTTCGTCAAGACTCTGACCGGAAAGACCATCACCCTCGAGGTTGA-GCCATC 5042992
Query 40749 CGACAGCGTGCAAACGCTCAAGGAAAAAATTCTCGACAAAGAGGGCATCCCCGCGGACCA 40808
||||| | | | | | |||| || |||| ||||| ||||| ||||| | || ||
Sbjct 5042993 CGACACCATCGAGAATGTGAAGGCCAAGATTCAGGACAAGGAGGGAATCCCGCCAGATCA 5043052
Query 40809 GCAACGACTCATCTACGCGGGCAAACAGCTGGACGACGAGCGCACCCTCAACGACTACAA 40868
||| || || |||| || ||||| |||||||| || | |||||||| ||||| ||
Sbjct 5043053 GCAGCGTCTGATCTTTGCCGGCAAGCAGCTGGAAGATGGCCGCACCCTGTCGGACTATAA 5043112
Query 40869 CATCCAGAAGGAGGCCACGCTGCATCTAGT 40898
|||||||||||| |||| || ||||| ||
Sbjct 5043113 CATCCAGAAGGAATCCACCCTCCATCTGGT 5043142
Score = 123 bits (136), Expect = 3e-23
Identities = 155/210 (74%), Gaps = 2/210 (1%)
Strand=Plus/Plus
Query 40690 ATGCAAATATTCGTAAAAACGCTCACGGGCAAAACCATCACCGTCGACGTCGAAGCCA-C 40748
||||| || ||||| || || || || || || ||||||||| |||| || || |||| |
Sbjct 5043162 ATGCAGATCTTCGTCAAGACTCTGACCGGAAAGACCATCACCCTCGAGGTTGA-GCCATC 5043220
Query 40749 CGACAGCGTGCAAACGCTCAAGGAAAAAATTCTCGACAAAGAGGGCATCCCCGCGGACCA 40808
||||| | | | | | |||| || |||| ||||| ||||| ||||| | || ||
Sbjct 5043221 CGACACCATCGAGAATGTGAAGGCCAAGATTCAGGACAAGGAGGGAATCCCGCCAGATCA 5043280
Query 40809 GCAACGACTCATCTACGCGGGCAAACAGCTGGACGACGAGCGCACCCTCAACGACTACAA 40868
||| || || |||| || ||||| |||||||| || | |||||||| ||||| ||
Sbjct 5043281 GCAGCGTCTGATCTTTGCTGGCAAGCAGCTGGAAGATGGCCGCACCCTGTCGGACTATAA 5043340
Query 40869 CATCCAGAAGGAGGCCACGCTGCATCTAGT 40898
|||||||||||| |||| || ||||| ||
Sbjct 5043341 CATCCAGAAGGAATCCACCCTCCATCTGGT 5043370
Score = 116 bits (128), Expect = 4e-21
Identities = 155/213 (73%), Gaps = 2/213 (1%)
Strand=Plus/Plus
Query 40687 AAAATGCAAATATTCGTAAAAACGCTCACGGGCAAAACCATCACCGTCGACGTCGAAGCC 40746
|| |||||||| ||||| || || || || || || || |||||| | || || || |||
Sbjct 5042703 AACATGCAAATCTTCGTCAAGACTCTGACCGGAAAGACTATCACCCTTGAGGTTGA-GCC 5042761
Query 40747 A-CCGACAGCGTGCAAACGCTCAAGGAAAAAATTCTCGACAAAGAGGGCATCCCCGCGGA 40805
| |||||| | | | | | |||| || |||| ||||| ||||| ||||| | ||
Sbjct 5042762 ATCCGACACCATCGAGAATGTGAAGGCCAAGATTCAGGACAAGGAGGGAATCCCGCCAGA 5042821
Query 40806 CCAGCAACGACTCATCTACGCGGGCAAACAGCTGGACGACGAGCGCACCCTCAACGACTA 40865
||||| || || |||| || || || |||||||| || | |||||||| |||||
Sbjct 5042822 TCAGCAGCGTCTGATCTTTGCTGGTAAGCAGCTGGAAGATGGCCGCACCCTGTCGGACTA 5042881
Query 40866 CAACATCCAGAAGGAGGCCACGCTGCATCTAGT 40898
|||||||||||||| |||| || ||||| ||
Sbjct 5042882 TAACATCCAGAAGGAATCCACCCTCCATCTGGT 5042914
>seq57
Length=1190389
Score = 113 bits (124), Expect = 5e-20
Identities = 154/215 (72%), Gaps = 0/215 (0%)
Strand=Plus/Minus
Query 40690 ATGCAAATATTCGTAAAAACGCTCACGGGCAAAACCATCACCGTCGACGTCGAAGCCACC 40749
||||| || ||||| ||||| ||||| ||||| |||||||| | || ||||| | |
Sbjct 631524 ATGCAGATTTTCGTGAAAACACTCACCGGCAAGACCATCACACTTGAGGTCGAGCCTTCG 631465
Query 40750 GACAGCGTGCAAACGCTCAAGGAAAAAATTCTCGACAAAGAGGGCATCCCCGCGGACCAG 40809
|||| | | | | |||| || || | || || || || || || | || |||
Sbjct 631464 GACACGATCGAGAATGTGAAGGCCAAGATCCAGGATAAGGAAGGAATTCCTCCAGATCAG 631405
Query 40810 CAACGACTCATCTACGCGGGCAAACAGCTGGACGACGAGCGCACCCTCAACGACTACAAC 40869
|| || ||||||| ||| ||||| |||||||| || | |||||||| |||||||||
Sbjct 631404 CAGCGTCTCATCTTCGCCGGCAAGCAGCTGGAGGATGGTCGCACCCTGTCGGACTACAAC 631345
Query 40870 ATCCAGAAGGAGGCCACGCTGCATCTAGTGTTGCG 40904
|| |||||||| | || || ||||| ||| ||||
Sbjct 631344 ATTCAGAAGGAATCTACCCTTCATCTGGTGCTGCG 631310
>seq20
Length=2346360
Score = 109 bits (120), Expect = 6e-19
Identities = 148/204 (73%), Gaps = 2/204 (1%)
Strand=Plus/Minus
Query 40690 ATGCAAATATTCGTAAAAACGCTCACGGGCAAAACCATCACCGTCGACGTCGAAGCCACC 40749
||||| || ||||| || ||||| || ||||| |||||||| | || ||||| | |
Sbjct 834516 ATGCAGATCTTCGTGAAGACGCTGACTGGCAAGACCATCACGCTGGAGGTCGAGCCGTCG 834457
Query 40750 GACAGCGTGCA-AACGCTCAAGGAAAAAATTCTCGACAAAGAGGGCATCCCCGCGGACCA 40808
|||| | | |||| | |||| || || | ||||| ||||| || || | || ||
Sbjct 834456 GACACGATCGAGAACG-TGAAGGCTAAGATCCAGGACAAGGAGGGTATTCCTCCAGATCA 834398
Query 40809 GCAACGACTCATCTACGCGGGCAAACAGCTGGACGACGAGCGCACCCTCAACGACTACAA 40868
||| || | |||| ||| || || |||||||| |||| || || || |||||||||
Sbjct 834397 GCAGCGTTTGATCTTCGCCGGAAAGCAGCTGGAGGACGGTCGTACTCTGTCCGACTACAA 834338
Query 40869 CATCCAGAAGGAGGCCACGCTGCA 40892
||||||||||||| | || |||||
Sbjct 834337 CATCCAGAAGGAGTCGACCCTGCA 834314
Score = 109 bits (120), Expect = 6e-19
Identities = 148/204 (73%), Gaps = 2/204 (1%)
Strand=Plus/Minus
Query 40690 ATGCAAATATTCGTAAAAACGCTCACGGGCAAAACCATCACCGTCGACGTCGAAGCCACC 40749
||||| || ||||| || ||||| || ||||| |||||||| | || ||||| | |
Sbjct 834744 ATGCAGATCTTCGTGAAGACGCTGACTGGCAAGACCATCACGCTGGAGGTCGAGCCGTCG 834685
Query 40750 GACAGCGTGCA-AACGCTCAAGGAAAAAATTCTCGACAAAGAGGGCATCCCCGCGGACCA 40808
|||| | | |||| | |||| || || | ||||| ||||| || || | || ||
Sbjct 834684 GACACGATCGAGAACG-TGAAGGCTAAGATCCAGGACAAGGAGGGTATTCCTCCAGATCA 834626
Query 40809 GCAACGACTCATCTACGCGGGCAAACAGCTGGACGACGAGCGCACCCTCAACGACTACAA 40868
||| || | |||| ||| || || |||||||| |||| || || || |||||||||
Sbjct 834625 GCAGCGTTTGATCTTCGCCGGAAAGCAGCTGGAGGACGGACGTACTCTGTCCGACTACAA 834566
Query 40869 CATCCAGAAGGAGGCCACGCTGCA 40892
||||||||||||| | || |||||
Sbjct 834565 CATCCAGAAGGAGTCGACCCTGCA 834542
Score = 107 bits (118), Expect = 2e-18
Identities = 150/205 (73%), Gaps = 4/205 (2%)
Strand=Plus/Minus
Query 40690 ATGCAAATATTCGTAAAAACGCTCACGGGCAAAACCATCACCGTCGACGTCGAAGCCACC 40749
||||| || ||||| || ||||| || ||||| |||||||| | || ||||| |||| |
Sbjct 834972 ATGCAGATCTTCGTGAAGACGCTGACTGGCAAGACCATCACGCTGGAGGTCGA-GCCATC 834914
Query 40750 G-ACAGCGTGCA-AACGCTCAAGGAAAAAATTCTCGACAAAGAGGGCATCCCCGCGGACC 40807
| ||| | | |||| | |||| || || | ||||| ||||| || || | || |
Sbjct 834913 GGACACGATCGAGAACG-TGAAGGCTAAGATCCAGGACAAGGAGGGTATTCCTCCAGATC 834855
Query 40808 AGCAACGACTCATCTACGCGGGCAAACAGCTGGACGACGAGCGCACCCTCAACGACTACA 40867
|||| || | |||| ||| || || |||||||| || | || || || ||||||||
Sbjct 834854 AGCAGCGTTTGATCTTCGCCGGAAAGCAGCTGGAGGATGGTCGTACTCTGTCCGACTACA 834795
Query 40868 ACATCCAGAAGGAGGCCACGCTGCA 40892
|||||||||||||| | || |||||
Sbjct 834794 ACATCCAGAAGGAGTCGACCCTGCA 834770
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 515068685150960
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |