Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Anopheles_20stephensi_20[genbank_20GCA_5F000300775.2_202013-07-19]
23,371 sequences; 221,324,304 total letters
Query= NC_002169.1
Length=135611
Score E
Sequences producing significant alignments: (Bits) Value
seq59 141 8e-29
seq57 134 1e-26
seq20 125 6e-24
seq1 113 4e-20
seq6 104 2e-17
>seq59
Length=1145648
Score = 141 bits (156), Expect = 8e-29
Identities = 696/1094 (64%), Gaps = 34/1094 (3%)
Strand=Plus/Plus
Query 132878 GTCGACGGTAAACTTTGTGGCCTGAGCGGCGGGTTTTGTGCGCAAATAATACATGCCCGT 132937
||| || ||||||| | || | |||| |||||||| |||| ||| |||||||||||
Sbjct 140738 GTCCACCGTAAACTGGATCGCATTTACGGCCGGTTTTGTTCGCAGATAGTACATGCCCGT 140797
Query 132938 TTTCAGTTTTTTCTCCCACGCGTAAAAGTGTATGCTCGACACCACCGAG---TAAGTGGG 132994
||||||| | | ||| |||||||||| || ||| || | | || | ||
Sbjct 140798 TTTCAGTCCCATTTTCCAGCCGTAAAAGTGGAT---CGATGTCAGCTTGCCATAGTTCGG 140854
Query 132995 TTCGGCGACAAATAAATTCAGCGATTGACTCTGATCTATGAAAGGAGCACGGTCGGCGGC 133054
|||||| || || || | |||||| |||||| || || | | | ||||| || ||
Sbjct 140855 TTCGGCCACGTGTATGTTGAACGATTGCGACTGATCGATAAACGCACCCCGGTCAGCAGC 140914
Query 133055 CATGTTTATTATACAC-TTTGATTTGA--TCTCCCATGCCGTCTTGAAGAGATTCTTGAC 133111
||| || || ||| ||| | || ||||||| |||| ||| | |||| |
Sbjct 140915 CATCTTAATG---CACGTTTTAACCGAAATCTCCCACACCGTTTTGTACAGATCGCGTAT 140971
Query 133112 ATGCTGTGGTATTTCGTCAATGTTCTGCACGGACCCGTTTTCGGCCAAAATCTTGTTGCG 133171
| || ||||| || ||| | || | || ||||| | || || ||| | |||
Sbjct 140972 TTCCTTCGGTATCGATTCGATGCTTTGAATCGATCCGTTGTTGGACAGAATTTGGTTCTT 141031
Query 133172 CAATTCCGGAGTGTAAATGTCGAGATCGATTAGCGCTTTGACGAGATACTGGTTGACCAC 133231
|| || || | | | | | | | ||| | |||| ||||| |||||
Sbjct 141032 CATGTCTAGATCCCACAGACCCATCGCTGTCAAATCTTGCAGCAGATGGTGGTTCACCAC 141091
Query 133232 TTGAAACTCGCCGGCGAGAACGCGTCTGAGATATACATTCGACGTGAACGGTTCGAAAGA 133291
||||||||||||| || || || | || || || |||||| |||||||||| ||
Sbjct 141092 CTGAAACTCGCCGGAAAGTACACGCCGATTGTAAACGTTGGACGTGTACGGTTCGAAGGA 141151
Query 133292 TTCGTTGTTGCCGAGTATCTGCGCCGTCGTCGCCGTGGGCATGTACGCCACCAACAAAGA 133351
|||||||| || | || || ||||||| || || ||||| |||| || || ||
Sbjct 141152 CTCGTTGTTACCCAAGATTTGTGCCGTCGAAGCGGTAGGCATCGGTGCCAACAGCAGCGA 141211
Query 133352 GTTTCTTACGCCGTACTTGTTTATGTTGCACTGCAATTCGTTCCAGTCCCACAGATTGTT 133411
|| | | ||||| ||| || || || ||| ||| ||| | ||| ||||
Sbjct 141212 ATTGCGGATGCCGTGCTTTGCAATTTTTTCCTTCAACTCGGCCCAATTCCAAAGATCC-- 141269
Query 133412 GGAATGATAGACGCCGTTCTCGTCGTCGTAGTTGTGAAAATGCAAAATACCCCTGCTCAC 133471
|||| |||| | || || || | | |||| || || |||| ||
Sbjct 141270 ---------GACG--GTTC-CTTCTTCCACATTTCGTAC-TGCAGGATGCCTTTGCTTAC 141316
Query 133472 CGGACTGTCCGTGTACGATTCATAGGGTCCGTTGATTTTGGCCAGCTCGCAGCTAGCCTC 133531
|||||| | ||||| ||| || ||||||| | ||||| ||| ||||| || ||
Sbjct 141317 CGGACTCCCTTCGTACGTTTCGTACGGTCCGTCGCGGGCGGCCAACTCACAGCTCGCTTC 141376
Query 133532 CAAAGCGGCAAAGTAAATGGTTTCCGCGATTGAATAGTTGACGAACCTGGCATCGTCGCT 133591
||| || | |||| || ||||| ||| | ||| | ||| || |||||
Sbjct 141377 CAATGCTCCGTAGTAGATTGTTTCGAAAATTTGTTGGTTCAGCTTTTGGGCCTCCTCGCT 141436
Query 133592 ATCGTAGGCGATGTCG-AGAAGAACAAACGCGTCGGCCAAACCCTGTATGCCGACGCCGA 133650
||||| | ||| || | | || ||||| ||||||| ||||| | |||| ||||
Sbjct 141437 TTCGTACG-GATAGCGCATCAAAATGAACGCATCGGCCATGCCCTGAACACCGATACCGA 141495
Query 133651 TGGGTCGATGTTTTTTATTGCTCCTCTCCGACTCGGCCGTGGGATAGTGGTTGACGTCGA 133710
| || | || | ||| | || || ||| | ||||||| ||| | ||||
Sbjct 141496 TCGGCCTGTGCCGCATGTTGGAGCGCTTCGCCTCCGGTACTGGATAGTAGTTTATATCGA 141555
Query 133711 TGATCTTGTTGAGATTGCGGACGATAATTTTAGTCAAATGTTTCAGCAAAACATAGTCAA 133770
| || ||||| |||||||| | ||| || | | || |||||| || ||||
Sbjct 141556 TAATTTTGTTCAGATTGCGCGTCAAAATCTTCGCGACATCCTTCAGCTTGGCAAAGTCGT 141615
Query 133771 ATGTCTTGGCGTCGACGTCGACGCACTTGTTGACGGCAATACTGGCTAGATTACAAACGG 133830
| || ||| | || || || || |||| | || || ||| | ||| || || |
Sbjct 141616 ACGTTTTGTC--CGGTTTC-ACAAACATGTTCAGCGCGATCGAGGCCAAATTGCACACCG 141672
Query 133831 CCGTCTCGTTCT-CGTCGCAATACTGGACGATCTCGGCGCAGAGGTTGCTGCATTTGATG 133889
| | || | || || || | |||| || ||||||| || || ||| || || |||
Sbjct 141673 CTATTTCATCCTTCGACG-AGTACTCCACTATCTCGGTACACAGATTGGAACACTTTATG 141731
Query 133890 GTGCCCAAAtttttttGATTGCTAAAGTTATTGCAATGATCCTTGTATAGCATGTACGGC 133949
||||| | || | |||||||| | ||||| ||||||||| |||||||||||
Sbjct 141732 GTGCCGATGTTCTGCTGATTGCTCTTGCGGTTGCACGCATCCTTGTACAGCATGTACGGA 141791
Query 133950 CCGCCGGTTTCGAC 133963
|||| ||||| ||
Sbjct 141792 ACGCCCGTTTCCAC 141805
Score = 87.8 bits (96), Expect = 2e-12
Identities = 210/316 (66%), Gaps = 4/316 (1%)
Strand=Plus/Plus
Query 134376 CCGCCGCCCAGATTCGAAATCAACGCGGACTCGTGTAGAGTCTTGTAAATGCCATCGACG 134435
|||||| || || ||||||| || ||| | ||| || | |||||| || || |
Sbjct 142257 CCGCCGGCCGATTTGGAAATCAGTGCACACTGCTTTAGCGTATCGTAAATACCCTCAATA 142316
Query 134436 CTGTCGTCCTTGATGCTTTGCAGGAAACACGAACACATTTGTTGACGACGCGTACCCGCC 134495
||||||||| ||| | |||| || || || | | || |||| ||||| | |||
Sbjct 142317 CTGTCGTCCGACATGGTAAGCAGAAAGCAAGACGAAAGCTGCGGACGCTGCGTAGCGGCC 142376
Query 134496 GAAAACAGAGTCGGGCTCGCGTGCGTAAAG--GTGCCCAGACTCATCAACTGATATGTTT 134553
| ||||| ||||| || || |||||| | || | || | || | || || |
Sbjct 142377 GCAAACATGGTCGGTGAGGCATGGGTAAAGTAGCGCTCGGAA--AGCAGATTGTACGTCT 142434
Query 134554 CAATGACGCTCTTAACGTCGTCGCCGTGAATGGCCAGAGCGACGCGCATGAGCATGTGTT 134613
| ||| | | || ||| || |||||||| | | || |||||||| ||||||||||
Sbjct 142435 CGATGGCAGCATCAATGTCTTCACCGTGAATACCGATGGCAACGCGCATCAGCATGTGTT 142494
Query 134614 GGGGTCTCTCCATGATCACGTCGTCGATTTTTAACAAATATCCATTGGTGAGGGTTTTGA 134673
| |||| ||||| ||| | | ||| || | |||||| | || |||||||
Sbjct 142495 GCGGTCGCTCCACAATCTTACCCTTGATCTTCAGCAAATAGGAACGCTCCAGTGTTTTGA 142554
Query 134674 AACCGAAATATTTGTA 134689
| |||||||| |||||
Sbjct 142555 AGCCGAAATAGTTGTA 142570
>seq57
Length=1190389
Score = 134 bits (148), Expect = 1e-26
Identities = 167/229 (73%), Gaps = 0/229 (0%)
Strand=Plus/Plus
Query 118511 ACCTCCGCGTAATCTCAACACCAAGTGGATTGTAGACTCTTTTTGAATGTTGTAATCGCT 118570
||| ||||| | || || ||||| || | ||||| || || ||||||||||| ||
Sbjct 631297 ACCACCGCGGAGTCGCAGCACCAGATGAAGGGTAGATTCCTTCTGAATGTTGTAGTCCGA 631356
Query 118571 CATAGTGCGCGTATCCTCGAGCTGTTTTCCAGCGTAGATGAGACGCTGCTGATCGGGAGG 118630
|| ||||| |||||| ||||| || || ||| ||||||||||||||||||| |||||
Sbjct 631357 CAGGGTGCGACCATCCTCCAGCTGCTTGCCGGCGAAGATGAGACGCTGCTGATCTGGAGG 631416
Query 118631 TATGCCCTCCTTGTCTGTAATTTTTTGTTTAACCTGTTCGACGGTGTCCGTGCTCTCGAC 118690
|| || ||||| || || || || || | |||| ||||||| ||||||
Sbjct 631417 AATTCCTTCCTTATCCTGGATCTTGGCCTTCACATTCTCGATCGTGTCCGAAGGCTCGAC 631476
Query 118691 CTCGACGGTCACCGTTTTGCCGGTCAGAGTTTTTACAAAAATCTGCATG 118739
||| | || | || |||||||| || ||||| || ||||||||||||
Sbjct 631477 CTCAAGTGTGATGGTCTTGCCGGTGAGTGTTTTCACGAAAATCTGCATG 631525
>seq20
Length=2346360
Score = 125 bits (138), Expect = 6e-24
Identities = 153/209 (73%), Gaps = 0/209 (0%)
Strand=Plus/Plus
Query 118530 ACCAAGTGGATTGTAGACTCTTTTTGAATGTTGTAATCGCTCATAGTGCGCGTATCCTCG 118589
|||||||| | || ||||| || || |||||||| ||| || ||| || ||||||
Sbjct 834764 ACCAAGTGCAGGGTCGACTCCTTCTGGATGTTGTAGTCGGACAGAGTACGACCATCCTCC 834823
Query 118590 AGCTGTTTTCCAGCGTAGATGAGACGCTGCTGATCGGGAGGTATGCCCTCCTTGTCTGTA 118649
||||| ||||| ||| |||| | |||||||||||| ||||| || |||||||||||
Sbjct 834824 AGCTGCTTTCCGGCGAAGATCAAACGCTGCTGATCTGGAGGAATACCCTCCTTGTCCTGG 834883
Query 118650 ATTTTTTGTTTAACCTGTTCGACGGTGTCCGTGCTCTCGACCTCGACGGTCACCGTTTTG 118709
|| || || || | |||| ||||||| ||||||||| | || | || |||
Sbjct 834884 ATCTTAGCCTTCACGTTCTCGATCGTGTCCGATGGCTCGACCTCCAGCGTGATGGTCTTG 834943
Query 118710 CCGGTCAGAGTTTTTACAAAAATCTGCAT 118738
|| ||||| || || || || ||||||||
Sbjct 834944 CCAGTCAGCGTCTTCACGAAGATCTGCAT 834972
Score = 122 bits (134), Expect = 8e-23
Identities = 163/227 (72%), Gaps = 0/227 (0%)
Strand=Plus/Plus
Query 118512 CCTCCGCGTAATCTCAACACCAAGTGGATTGTAGACTCTTTTTGAATGTTGTAATCGCTC 118571
|| ||||| | || | |||||||| | || ||||| || || |||||||| ||| |
Sbjct 834290 CCCCCGCGAAGTCGAAGAACCAAGTGCAGGGTCGACTCCTTCTGGATGTTGTAGTCGGAC 834349
Query 118572 ATAGTGCGCGTATCCTCGAGCTGTTTTCCAGCGTAGATGAGACGCTGCTGATCGGGAGGT 118631
| ||| || ||||| ||||| ||||| ||| |||| | |||||||||||| |||||
Sbjct 834350 AGAGTACGACCGTCCTCCAGCTGCTTTCCGGCGAAGATCAAACGCTGCTGATCTGGAGGA 834409
Query 118632 ATGCCCTCCTTGTCTGTAATTTTTTGTTTAACCTGTTCGACGGTGTCCGTGCTCTCGACC 118691
|| ||||||||||| || || || || | |||| ||||||| |||||||
Sbjct 834410 ATACCCTCCTTGTCCTGGATCTTAGCCTTCACGTTCTCGATCGTGTCCGACGGCTCGACC 834469
Query 118692 TCGACGGTCACCGTTTTGCCGGTCAGAGTTTTTACAAAAATCTGCAT 118738
|| | || | || ||||| ||||| || || || || ||||||||
Sbjct 834470 TCCAGCGTGATGGTCTTGCCAGTCAGCGTCTTCACGAAGATCTGCAT 834516
Score = 120 bits (132), Expect = 3e-22
Identities = 152/209 (73%), Gaps = 0/209 (0%)
Strand=Plus/Plus
Query 118530 ACCAAGTGGATTGTAGACTCTTTTTGAATGTTGTAATCGCTCATAGTGCGCGTATCCTCG 118589
|||||||| | || ||||| || || |||||||| ||| || ||| || |||||
Sbjct 834536 ACCAAGTGCAGGGTCGACTCCTTCTGGATGTTGTAGTCGGACAGAGTACGTCCGTCCTCC 834595
Query 118590 AGCTGTTTTCCAGCGTAGATGAGACGCTGCTGATCGGGAGGTATGCCCTCCTTGTCTGTA 118649
||||| ||||| ||| |||| | |||||||||||| ||||| || |||||||||||
Sbjct 834596 AGCTGCTTTCCGGCGAAGATCAAACGCTGCTGATCTGGAGGAATACCCTCCTTGTCCTGG 834655
Query 118650 ATTTTTTGTTTAACCTGTTCGACGGTGTCCGTGCTCTCGACCTCGACGGTCACCGTTTTG 118709
|| || || || | |||| ||||||| ||||||||| | || | || |||
Sbjct 834656 ATCTTAGCCTTCACGTTCTCGATCGTGTCCGACGGCTCGACCTCCAGCGTGATGGTCTTG 834715
Query 118710 CCGGTCAGAGTTTTTACAAAAATCTGCAT 118738
|| ||||| || || || || ||||||||
Sbjct 834716 CCAGTCAGCGTCTTCACGAAGATCTGCAT 834744
>seq1
Length=5975090
Score = 113 bits (124), Expect = 4e-20
Identities = 151/210 (72%), Gaps = 0/210 (0%)
Strand=Plus/Minus
Query 118530 ACCAAGTGGATTGTAGACTCTTTTTGAATGTTGTAATCGCTCATAGTGCGCGTATCCTCG 118589
|||| |||| || || || || || ||||| || || || ||||| ||| ||
Sbjct 5043370 ACCAGATGGAGGGTGGATTCCTTCTGGATGTTATAGTCCGACAGGGTGCGGCCATCTTCC 5043311
Query 118590 AGCTGTTTTCCAGCGTAGATGAGACGCTGCTGATCGGGAGGTATGCCCTCCTTGTCTGTA 118649
||||| || ||||| |||| |||||||||||||| || || || ||||||||||| |
Sbjct 5043310 AGCTGCTTGCCAGCAAAGATCAGACGCTGCTGATCTGGCGGGATTCCCTCCTTGTCCTGA 5043251
Query 118650 ATTTTTTGTTTAACCTGTTCGACGGTGTCCGTGCTCTCGACCTCGACGGTCACCGTTTTG 118709
|| || || || | |||| |||||| | ||| ||||||| ||| | || ||
Sbjct 5043250 ATCTTGGCCTTCACATTCTCGATGGTGTCGGATGGCTCAACCTCGAGGGTGATGGTCTTT 5043191
Query 118710 CCGGTCAGAGTTTTTACAAAAATCTGCATG 118739
||||||||||| || || || |||||||||
Sbjct 5043190 CCGGTCAGAGTCTTGACGAAGATCTGCATG 5043161
Score = 109 bits (120), Expect = 5e-19
Identities = 150/210 (71%), Gaps = 0/210 (0%)
Strand=Plus/Minus
Query 118530 ACCAAGTGGATTGTAGACTCTTTTTGAATGTTGTAATCGCTCATAGTGCGCGTATCCTCG 118589
|||| |||| || || || || || ||||| || || || ||||| ||| ||
Sbjct 5043142 ACCAGATGGAGGGTGGATTCCTTCTGGATGTTATAGTCCGACAGGGTGCGGCCATCTTCC 5043083
Query 118590 AGCTGTTTTCCAGCGTAGATGAGACGCTGCTGATCGGGAGGTATGCCCTCCTTGTCTGTA 118649
||||| || || || |||| |||||||||||||| || || || ||||||||||| |
Sbjct 5043082 AGCTGCTTGCCGGCAAAGATCAGACGCTGCTGATCTGGCGGGATTCCCTCCTTGTCCTGA 5043023
Query 118650 ATTTTTTGTTTAACCTGTTCGACGGTGTCCGTGCTCTCGACCTCGACGGTCACCGTTTTG 118709
|| || || || | |||| |||||| | ||| ||||||| ||| | || ||
Sbjct 5043022 ATCTTGGCCTTCACATTCTCGATGGTGTCGGATGGCTCAACCTCGAGGGTGATGGTCTTT 5042963
Query 118710 CCGGTCAGAGTTTTTACAAAAATCTGCATG 118739
||||||||||| || || || |||||||||
Sbjct 5042962 CCGGTCAGAGTCTTGACGAAGATCTGCATG 5042933
Score = 104 bits (114), Expect = 2e-17
Identities = 149/210 (71%), Gaps = 0/210 (0%)
Strand=Plus/Minus
Query 118530 ACCAAGTGGATTGTAGACTCTTTTTGAATGTTGTAATCGCTCATAGTGCGCGTATCCTCG 118589
|||| |||| || || || || || ||||| || || || ||||| ||| ||
Sbjct 5042914 ACCAGATGGAGGGTGGATTCCTTCTGGATGTTATAGTCCGACAGGGTGCGGCCATCTTCC 5042855
Query 118590 AGCTGTTTTCCAGCGTAGATGAGACGCTGCTGATCGGGAGGTATGCCCTCCTTGTCTGTA 118649
||||| || ||||| |||| |||||||||||||| || || || ||||||||||| |
Sbjct 5042854 AGCTGCTTACCAGCAAAGATCAGACGCTGCTGATCTGGCGGGATTCCCTCCTTGTCCTGA 5042795
Query 118650 ATTTTTTGTTTAACCTGTTCGACGGTGTCCGTGCTCTCGACCTCGACGGTCACCGTTTTG 118709
|| || || || | |||| |||||| | ||| ||||| | ||| | || ||
Sbjct 5042794 ATCTTGGCCTTCACATTCTCGATGGTGTCGGATGGCTCAACCTCAAGGGTGATAGTCTTT 5042735
Query 118710 CCGGTCAGAGTTTTTACAAAAATCTGCATG 118739
||||||||||| || || || || ||||||
Sbjct 5042734 CCGGTCAGAGTCTTGACGAAGATTTGCATG 5042705
>seq6
Length=4219845
Score = 104 bits (114), Expect = 2e-17
Identities = 149/210 (71%), Gaps = 0/210 (0%)
Strand=Plus/Plus
Query 118529 CACCAAGTGGATTGTAGACTCTTTTTGAATGTTGTAATCGCTCATAGTGCGCGTATCCTC 118588
||||| || | || ||||| || || |||||||| ||| || ||||| |||||
Sbjct 2100936 CACCAGATGAAGGGTCGACTCCTTCTGGATGTTGTAGTCGGACAGGGTGCGTCCGTCCTC 2100995
Query 118589 GAGCTGTTTTCCAGCGTAGATGAGACGCTGCTGATCGGGAGGTATGCCCTCCTTGTCTGT 118648
||||| || || ||| |||| |||||||||||||| || || ||||||||||||||
Sbjct 2100996 CAGCTGCTTACCGGCGAAGATCAGACGCTGCTGATCCGGCGGGATGCCCTCCTTGTCCTG 2101055
Query 118649 AATTTTTTGTTTAACCTGTTCGACGGTGTCCGTGCTCTCGACCTCGACGGTCACCGTTTT 118708
|| || || || | |||| || |||| ||||||||| | || | || ||
Sbjct 2101056 GATCTTCGCCTTCACATTCTCGATCGTATCCGATGGCTCGACCTCAAGAGTAATGGTCTT 2101115
Query 118709 GCCGGTCAGAGTTTTTACAAAAATCTGCAT 118738
|| || || ||||| || || ||||||||
Sbjct 2101116 ACCCGTGAGGGTTTTGACGAAGATCTGCAT 2101145
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 433706830324732
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |