Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Anopheles_20stephensi_20[genbank_20GCA_5F000300775.2_202013-07-19] 23,371 sequences; 221,324,304 total letters Query= NC_002169.1 Length=135611 Score E Sequences producing significant alignments: (Bits) Value seq59 141 8e-29 seq57 134 1e-26 seq20 125 6e-24 seq1 113 4e-20 seq6 104 2e-17 >seq59 Length=1145648 Score = 141 bits (156), Expect = 8e-29 Identities = 696/1094 (64%), Gaps = 34/1094 (3%) Strand=Plus/Plus Query 132878 GTCGACGGTAAACTTTGTGGCCTGAGCGGCGGGTTTTGTGCGCAAATAATACATGCCCGT 132937 ||| || ||||||| | || | |||| |||||||| |||| ||| ||||||||||| Sbjct 140738 GTCCACCGTAAACTGGATCGCATTTACGGCCGGTTTTGTTCGCAGATAGTACATGCCCGT 140797 Query 132938 TTTCAGTTTTTTCTCCCACGCGTAAAAGTGTATGCTCGACACCACCGAG---TAAGTGGG 132994 ||||||| | | ||| |||||||||| || ||| || | | || | || Sbjct 140798 TTTCAGTCCCATTTTCCAGCCGTAAAAGTGGAT---CGATGTCAGCTTGCCATAGTTCGG 140854 Query 132995 TTCGGCGACAAATAAATTCAGCGATTGACTCTGATCTATGAAAGGAGCACGGTCGGCGGC 133054 |||||| || || || | |||||| |||||| || || | | | ||||| || || Sbjct 140855 TTCGGCCACGTGTATGTTGAACGATTGCGACTGATCGATAAACGCACCCCGGTCAGCAGC 140914 Query 133055 CATGTTTATTATACAC-TTTGATTTGA--TCTCCCATGCCGTCTTGAAGAGATTCTTGAC 133111 ||| || || ||| ||| | || ||||||| |||| ||| | |||| | Sbjct 140915 CATCTTAATG---CACGTTTTAACCGAAATCTCCCACACCGTTTTGTACAGATCGCGTAT 140971 Query 133112 ATGCTGTGGTATTTCGTCAATGTTCTGCACGGACCCGTTTTCGGCCAAAATCTTGTTGCG 133171 | || ||||| || ||| | || | || ||||| | || || ||| | ||| Sbjct 140972 TTCCTTCGGTATCGATTCGATGCTTTGAATCGATCCGTTGTTGGACAGAATTTGGTTCTT 141031 Query 133172 CAATTCCGGAGTGTAAATGTCGAGATCGATTAGCGCTTTGACGAGATACTGGTTGACCAC 133231 || || || | | | | | | | ||| | |||| ||||| ||||| Sbjct 141032 CATGTCTAGATCCCACAGACCCATCGCTGTCAAATCTTGCAGCAGATGGTGGTTCACCAC 141091 Query 133232 TTGAAACTCGCCGGCGAGAACGCGTCTGAGATATACATTCGACGTGAACGGTTCGAAAGA 133291 ||||||||||||| || || || | || || || |||||| |||||||||| || Sbjct 141092 CTGAAACTCGCCGGAAAGTACACGCCGATTGTAAACGTTGGACGTGTACGGTTCGAAGGA 141151 Query 133292 TTCGTTGTTGCCGAGTATCTGCGCCGTCGTCGCCGTGGGCATGTACGCCACCAACAAAGA 133351 |||||||| || | || || ||||||| || || ||||| |||| || || || Sbjct 141152 CTCGTTGTTACCCAAGATTTGTGCCGTCGAAGCGGTAGGCATCGGTGCCAACAGCAGCGA 141211 Query 133352 GTTTCTTACGCCGTACTTGTTTATGTTGCACTGCAATTCGTTCCAGTCCCACAGATTGTT 133411 || | | ||||| ||| || || || ||| ||| ||| | ||| |||| Sbjct 141212 ATTGCGGATGCCGTGCTTTGCAATTTTTTCCTTCAACTCGGCCCAATTCCAAAGATCC-- 141269 Query 133412 GGAATGATAGACGCCGTTCTCGTCGTCGTAGTTGTGAAAATGCAAAATACCCCTGCTCAC 133471 |||| |||| | || || || | | |||| || || |||| || Sbjct 141270 ---------GACG--GTTC-CTTCTTCCACATTTCGTAC-TGCAGGATGCCTTTGCTTAC 141316 Query 133472 CGGACTGTCCGTGTACGATTCATAGGGTCCGTTGATTTTGGCCAGCTCGCAGCTAGCCTC 133531 |||||| | ||||| ||| || ||||||| | ||||| ||| ||||| || || Sbjct 141317 CGGACTCCCTTCGTACGTTTCGTACGGTCCGTCGCGGGCGGCCAACTCACAGCTCGCTTC 141376 Query 133532 CAAAGCGGCAAAGTAAATGGTTTCCGCGATTGAATAGTTGACGAACCTGGCATCGTCGCT 133591 ||| || | |||| || ||||| ||| | ||| | ||| || ||||| Sbjct 141377 CAATGCTCCGTAGTAGATTGTTTCGAAAATTTGTTGGTTCAGCTTTTGGGCCTCCTCGCT 141436 Query 133592 ATCGTAGGCGATGTCG-AGAAGAACAAACGCGTCGGCCAAACCCTGTATGCCGACGCCGA 133650 ||||| | ||| || | | || ||||| ||||||| ||||| | |||| |||| Sbjct 141437 TTCGTACG-GATAGCGCATCAAAATGAACGCATCGGCCATGCCCTGAACACCGATACCGA 141495 Query 133651 TGGGTCGATGTTTTTTATTGCTCCTCTCCGACTCGGCCGTGGGATAGTGGTTGACGTCGA 133710 | || | || | ||| | || || ||| | ||||||| ||| | |||| Sbjct 141496 TCGGCCTGTGCCGCATGTTGGAGCGCTTCGCCTCCGGTACTGGATAGTAGTTTATATCGA 141555 Query 133711 TGATCTTGTTGAGATTGCGGACGATAATTTTAGTCAAATGTTTCAGCAAAACATAGTCAA 133770 | || ||||| |||||||| | ||| || | | || |||||| || |||| Sbjct 141556 TAATTTTGTTCAGATTGCGCGTCAAAATCTTCGCGACATCCTTCAGCTTGGCAAAGTCGT 141615 Query 133771 ATGTCTTGGCGTCGACGTCGACGCACTTGTTGACGGCAATACTGGCTAGATTACAAACGG 133830 | || ||| | || || || || |||| | || || ||| | ||| || || | Sbjct 141616 ACGTTTTGTC--CGGTTTC-ACAAACATGTTCAGCGCGATCGAGGCCAAATTGCACACCG 141672 Query 133831 CCGTCTCGTTCT-CGTCGCAATACTGGACGATCTCGGCGCAGAGGTTGCTGCATTTGATG 133889 | | || | || || || | |||| || ||||||| || || ||| || || ||| Sbjct 141673 CTATTTCATCCTTCGACG-AGTACTCCACTATCTCGGTACACAGATTGGAACACTTTATG 141731 Query 133890 GTGCCCAAAtttttttGATTGCTAAAGTTATTGCAATGATCCTTGTATAGCATGTACGGC 133949 ||||| | || | |||||||| | ||||| ||||||||| ||||||||||| Sbjct 141732 GTGCCGATGTTCTGCTGATTGCTCTTGCGGTTGCACGCATCCTTGTACAGCATGTACGGA 141791 Query 133950 CCGCCGGTTTCGAC 133963 |||| ||||| || Sbjct 141792 ACGCCCGTTTCCAC 141805 Score = 87.8 bits (96), Expect = 2e-12 Identities = 210/316 (66%), Gaps = 4/316 (1%) Strand=Plus/Plus Query 134376 CCGCCGCCCAGATTCGAAATCAACGCGGACTCGTGTAGAGTCTTGTAAATGCCATCGACG 134435 |||||| || || ||||||| || ||| | ||| || | |||||| || || | Sbjct 142257 CCGCCGGCCGATTTGGAAATCAGTGCACACTGCTTTAGCGTATCGTAAATACCCTCAATA 142316 Query 134436 CTGTCGTCCTTGATGCTTTGCAGGAAACACGAACACATTTGTTGACGACGCGTACCCGCC 134495 ||||||||| ||| | |||| || || || | | || |||| ||||| | ||| Sbjct 142317 CTGTCGTCCGACATGGTAAGCAGAAAGCAAGACGAAAGCTGCGGACGCTGCGTAGCGGCC 142376 Query 134496 GAAAACAGAGTCGGGCTCGCGTGCGTAAAG--GTGCCCAGACTCATCAACTGATATGTTT 134553 | ||||| ||||| || || |||||| | || | || | || | || || | Sbjct 142377 GCAAACATGGTCGGTGAGGCATGGGTAAAGTAGCGCTCGGAA--AGCAGATTGTACGTCT 142434 Query 134554 CAATGACGCTCTTAACGTCGTCGCCGTGAATGGCCAGAGCGACGCGCATGAGCATGTGTT 134613 | ||| | | || ||| || |||||||| | | || |||||||| |||||||||| Sbjct 142435 CGATGGCAGCATCAATGTCTTCACCGTGAATACCGATGGCAACGCGCATCAGCATGTGTT 142494 Query 134614 GGGGTCTCTCCATGATCACGTCGTCGATTTTTAACAAATATCCATTGGTGAGGGTTTTGA 134673 | |||| ||||| ||| | | ||| || | |||||| | || ||||||| Sbjct 142495 GCGGTCGCTCCACAATCTTACCCTTGATCTTCAGCAAATAGGAACGCTCCAGTGTTTTGA 142554 Query 134674 AACCGAAATATTTGTA 134689 | |||||||| ||||| Sbjct 142555 AGCCGAAATAGTTGTA 142570 >seq57 Length=1190389 Score = 134 bits (148), Expect = 1e-26 Identities = 167/229 (73%), Gaps = 0/229 (0%) Strand=Plus/Plus Query 118511 ACCTCCGCGTAATCTCAACACCAAGTGGATTGTAGACTCTTTTTGAATGTTGTAATCGCT 118570 ||| ||||| | || || ||||| || | ||||| || || ||||||||||| || Sbjct 631297 ACCACCGCGGAGTCGCAGCACCAGATGAAGGGTAGATTCCTTCTGAATGTTGTAGTCCGA 631356 Query 118571 CATAGTGCGCGTATCCTCGAGCTGTTTTCCAGCGTAGATGAGACGCTGCTGATCGGGAGG 118630 || ||||| |||||| ||||| || || ||| ||||||||||||||||||| ||||| Sbjct 631357 CAGGGTGCGACCATCCTCCAGCTGCTTGCCGGCGAAGATGAGACGCTGCTGATCTGGAGG 631416 Query 118631 TATGCCCTCCTTGTCTGTAATTTTTTGTTTAACCTGTTCGACGGTGTCCGTGCTCTCGAC 118690 || || ||||| || || || || || | |||| ||||||| |||||| Sbjct 631417 AATTCCTTCCTTATCCTGGATCTTGGCCTTCACATTCTCGATCGTGTCCGAAGGCTCGAC 631476 Query 118691 CTCGACGGTCACCGTTTTGCCGGTCAGAGTTTTTACAAAAATCTGCATG 118739 ||| | || | || |||||||| || ||||| || |||||||||||| Sbjct 631477 CTCAAGTGTGATGGTCTTGCCGGTGAGTGTTTTCACGAAAATCTGCATG 631525 >seq20 Length=2346360 Score = 125 bits (138), Expect = 6e-24 Identities = 153/209 (73%), Gaps = 0/209 (0%) Strand=Plus/Plus Query 118530 ACCAAGTGGATTGTAGACTCTTTTTGAATGTTGTAATCGCTCATAGTGCGCGTATCCTCG 118589 |||||||| | || ||||| || || |||||||| ||| || ||| || |||||| Sbjct 834764 ACCAAGTGCAGGGTCGACTCCTTCTGGATGTTGTAGTCGGACAGAGTACGACCATCCTCC 834823 Query 118590 AGCTGTTTTCCAGCGTAGATGAGACGCTGCTGATCGGGAGGTATGCCCTCCTTGTCTGTA 118649 ||||| ||||| ||| |||| | |||||||||||| ||||| || ||||||||||| Sbjct 834824 AGCTGCTTTCCGGCGAAGATCAAACGCTGCTGATCTGGAGGAATACCCTCCTTGTCCTGG 834883 Query 118650 ATTTTTTGTTTAACCTGTTCGACGGTGTCCGTGCTCTCGACCTCGACGGTCACCGTTTTG 118709 || || || || | |||| ||||||| ||||||||| | || | || ||| Sbjct 834884 ATCTTAGCCTTCACGTTCTCGATCGTGTCCGATGGCTCGACCTCCAGCGTGATGGTCTTG 834943 Query 118710 CCGGTCAGAGTTTTTACAAAAATCTGCAT 118738 || ||||| || || || || |||||||| Sbjct 834944 CCAGTCAGCGTCTTCACGAAGATCTGCAT 834972 Score = 122 bits (134), Expect = 8e-23 Identities = 163/227 (72%), Gaps = 0/227 (0%) Strand=Plus/Plus Query 118512 CCTCCGCGTAATCTCAACACCAAGTGGATTGTAGACTCTTTTTGAATGTTGTAATCGCTC 118571 || ||||| | || | |||||||| | || ||||| || || |||||||| ||| | Sbjct 834290 CCCCCGCGAAGTCGAAGAACCAAGTGCAGGGTCGACTCCTTCTGGATGTTGTAGTCGGAC 834349 Query 118572 ATAGTGCGCGTATCCTCGAGCTGTTTTCCAGCGTAGATGAGACGCTGCTGATCGGGAGGT 118631 | ||| || ||||| ||||| ||||| ||| |||| | |||||||||||| ||||| Sbjct 834350 AGAGTACGACCGTCCTCCAGCTGCTTTCCGGCGAAGATCAAACGCTGCTGATCTGGAGGA 834409 Query 118632 ATGCCCTCCTTGTCTGTAATTTTTTGTTTAACCTGTTCGACGGTGTCCGTGCTCTCGACC 118691 || ||||||||||| || || || || | |||| ||||||| ||||||| Sbjct 834410 ATACCCTCCTTGTCCTGGATCTTAGCCTTCACGTTCTCGATCGTGTCCGACGGCTCGACC 834469 Query 118692 TCGACGGTCACCGTTTTGCCGGTCAGAGTTTTTACAAAAATCTGCAT 118738 || | || | || ||||| ||||| || || || || |||||||| Sbjct 834470 TCCAGCGTGATGGTCTTGCCAGTCAGCGTCTTCACGAAGATCTGCAT 834516 Score = 120 bits (132), Expect = 3e-22 Identities = 152/209 (73%), Gaps = 0/209 (0%) Strand=Plus/Plus Query 118530 ACCAAGTGGATTGTAGACTCTTTTTGAATGTTGTAATCGCTCATAGTGCGCGTATCCTCG 118589 |||||||| | || ||||| || || |||||||| ||| || ||| || ||||| Sbjct 834536 ACCAAGTGCAGGGTCGACTCCTTCTGGATGTTGTAGTCGGACAGAGTACGTCCGTCCTCC 834595 Query 118590 AGCTGTTTTCCAGCGTAGATGAGACGCTGCTGATCGGGAGGTATGCCCTCCTTGTCTGTA 118649 ||||| ||||| ||| |||| | |||||||||||| ||||| || ||||||||||| Sbjct 834596 AGCTGCTTTCCGGCGAAGATCAAACGCTGCTGATCTGGAGGAATACCCTCCTTGTCCTGG 834655 Query 118650 ATTTTTTGTTTAACCTGTTCGACGGTGTCCGTGCTCTCGACCTCGACGGTCACCGTTTTG 118709 || || || || | |||| ||||||| ||||||||| | || | || ||| Sbjct 834656 ATCTTAGCCTTCACGTTCTCGATCGTGTCCGACGGCTCGACCTCCAGCGTGATGGTCTTG 834715 Query 118710 CCGGTCAGAGTTTTTACAAAAATCTGCAT 118738 || ||||| || || || || |||||||| Sbjct 834716 CCAGTCAGCGTCTTCACGAAGATCTGCAT 834744 >seq1 Length=5975090 Score = 113 bits (124), Expect = 4e-20 Identities = 151/210 (72%), Gaps = 0/210 (0%) Strand=Plus/Minus Query 118530 ACCAAGTGGATTGTAGACTCTTTTTGAATGTTGTAATCGCTCATAGTGCGCGTATCCTCG 118589 |||| |||| || || || || || ||||| || || || ||||| ||| || Sbjct 5043370 ACCAGATGGAGGGTGGATTCCTTCTGGATGTTATAGTCCGACAGGGTGCGGCCATCTTCC 5043311 Query 118590 AGCTGTTTTCCAGCGTAGATGAGACGCTGCTGATCGGGAGGTATGCCCTCCTTGTCTGTA 118649 ||||| || ||||| |||| |||||||||||||| || || || ||||||||||| | Sbjct 5043310 AGCTGCTTGCCAGCAAAGATCAGACGCTGCTGATCTGGCGGGATTCCCTCCTTGTCCTGA 5043251 Query 118650 ATTTTTTGTTTAACCTGTTCGACGGTGTCCGTGCTCTCGACCTCGACGGTCACCGTTTTG 118709 || || || || | |||| |||||| | ||| ||||||| ||| | || || Sbjct 5043250 ATCTTGGCCTTCACATTCTCGATGGTGTCGGATGGCTCAACCTCGAGGGTGATGGTCTTT 5043191 Query 118710 CCGGTCAGAGTTTTTACAAAAATCTGCATG 118739 ||||||||||| || || || ||||||||| Sbjct 5043190 CCGGTCAGAGTCTTGACGAAGATCTGCATG 5043161 Score = 109 bits (120), Expect = 5e-19 Identities = 150/210 (71%), Gaps = 0/210 (0%) Strand=Plus/Minus Query 118530 ACCAAGTGGATTGTAGACTCTTTTTGAATGTTGTAATCGCTCATAGTGCGCGTATCCTCG 118589 |||| |||| || || || || || ||||| || || || ||||| ||| || Sbjct 5043142 ACCAGATGGAGGGTGGATTCCTTCTGGATGTTATAGTCCGACAGGGTGCGGCCATCTTCC 5043083 Query 118590 AGCTGTTTTCCAGCGTAGATGAGACGCTGCTGATCGGGAGGTATGCCCTCCTTGTCTGTA 118649 ||||| || || || |||| |||||||||||||| || || || ||||||||||| | Sbjct 5043082 AGCTGCTTGCCGGCAAAGATCAGACGCTGCTGATCTGGCGGGATTCCCTCCTTGTCCTGA 5043023 Query 118650 ATTTTTTGTTTAACCTGTTCGACGGTGTCCGTGCTCTCGACCTCGACGGTCACCGTTTTG 118709 || || || || | |||| |||||| | ||| ||||||| ||| | || || Sbjct 5043022 ATCTTGGCCTTCACATTCTCGATGGTGTCGGATGGCTCAACCTCGAGGGTGATGGTCTTT 5042963 Query 118710 CCGGTCAGAGTTTTTACAAAAATCTGCATG 118739 ||||||||||| || || || ||||||||| Sbjct 5042962 CCGGTCAGAGTCTTGACGAAGATCTGCATG 5042933 Score = 104 bits (114), Expect = 2e-17 Identities = 149/210 (71%), Gaps = 0/210 (0%) Strand=Plus/Minus Query 118530 ACCAAGTGGATTGTAGACTCTTTTTGAATGTTGTAATCGCTCATAGTGCGCGTATCCTCG 118589 |||| |||| || || || || || ||||| || || || ||||| ||| || Sbjct 5042914 ACCAGATGGAGGGTGGATTCCTTCTGGATGTTATAGTCCGACAGGGTGCGGCCATCTTCC 5042855 Query 118590 AGCTGTTTTCCAGCGTAGATGAGACGCTGCTGATCGGGAGGTATGCCCTCCTTGTCTGTA 118649 ||||| || ||||| |||| |||||||||||||| || || || ||||||||||| | Sbjct 5042854 AGCTGCTTACCAGCAAAGATCAGACGCTGCTGATCTGGCGGGATTCCCTCCTTGTCCTGA 5042795 Query 118650 ATTTTTTGTTTAACCTGTTCGACGGTGTCCGTGCTCTCGACCTCGACGGTCACCGTTTTG 118709 || || || || | |||| |||||| | ||| ||||| | ||| | || || Sbjct 5042794 ATCTTGGCCTTCACATTCTCGATGGTGTCGGATGGCTCAACCTCAAGGGTGATAGTCTTT 5042735 Query 118710 CCGGTCAGAGTTTTTACAAAAATCTGCATG 118739 ||||||||||| || || || || |||||| Sbjct 5042734 CCGGTCAGAGTCTTGACGAAGATTTGCATG 5042705 >seq6 Length=4219845 Score = 104 bits (114), Expect = 2e-17 Identities = 149/210 (71%), Gaps = 0/210 (0%) Strand=Plus/Plus Query 118529 CACCAAGTGGATTGTAGACTCTTTTTGAATGTTGTAATCGCTCATAGTGCGCGTATCCTC 118588 ||||| || | || ||||| || || |||||||| ||| || ||||| ||||| Sbjct 2100936 CACCAGATGAAGGGTCGACTCCTTCTGGATGTTGTAGTCGGACAGGGTGCGTCCGTCCTC 2100995 Query 118589 GAGCTGTTTTCCAGCGTAGATGAGACGCTGCTGATCGGGAGGTATGCCCTCCTTGTCTGT 118648 ||||| || || ||| |||| |||||||||||||| || || |||||||||||||| Sbjct 2100996 CAGCTGCTTACCGGCGAAGATCAGACGCTGCTGATCCGGCGGGATGCCCTCCTTGTCCTG 2101055 Query 118649 AATTTTTTGTTTAACCTGTTCGACGGTGTCCGTGCTCTCGACCTCGACGGTCACCGTTTT 118708 || || || || | |||| || |||| ||||||||| | || | || || Sbjct 2101056 GATCTTCGCCTTCACATTCTCGATCGTATCCGATGGCTCGACCTCAAGAGTAATGGTCTT 2101115 Query 118709 GCCGGTCAGAGTTTTTACAAAAATCTGCAT 118738 || || || ||||| || || |||||||| Sbjct 2101116 ACCCGTGAGGGTTTTGACGAAGATCTGCAT 2101145 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 433706830324732