Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Anopheles_20stephensi_20[genbank_20GCA_5F000300775.2_202013-07-19]
23,371 sequences; 221,324,304 total letters
Query= NC_002331.1
Length=178733
Score E
Sequences producing significant alignments: (Bits) Value
seq154 104 3e-17
seq107 98.7 1e-15
seq106 98.7 1e-15
seq49 98.7 1e-15
seq74 96.9 4e-15
seq13 96.9 4e-15
seq1866 95.1 1e-14
seq179 95.1 1e-14
seq31 95.1 1e-14
seq6 93.3 5e-14
seq1 84.2 3e-11
>seq154
Length=155269
Score = 104 bits (114), Expect = 3e-17
Identities = 69/77 (90%), Gaps = 0/77 (0%)
Strand=Plus/Minus
Query 60061 ATTTTCTCCTCGGCAGGGAATCGAACCCTGGTCTCCCGCGTGACAGGCGGACATACTCAC 60120
||||||||| || | ||||||||||||| ||||||||||||||||||||| ||||| ||
Sbjct 83724 ATTTTCTCCCCGACGGGGAATCGAACCCCGGTCTCCCGCGTGACAGGCGGGGATACTGAC 83665
Query 60121 CACTATACTACCGAGGA 60137
|||||||||| ||||||
Sbjct 83664 CACTATACTATCGAGGA 83648
>seq107
Length=506788
Score = 98.7 bits (108), Expect = 1e-15
Identities = 68/77 (88%), Gaps = 0/77 (0%)
Strand=Plus/Plus
Query 60062 TTTTCTCCTCGGCAGGGAATCGAACCCTGGTCTCCCGCGTGACAGGCGGACATACTCACC 60121
|| ||||| || | ||||||||||||| ||||||||||||||||||||| ||||| |||
Sbjct 357695 TTCTCTCCCCGACGGGGAATCGAACCCCGGTCTCCCGCGTGACAGGCGGGGATACTGACC 357754
Query 60122 ACTATACTACCGAGGAT 60138
||||||||| |||||||
Sbjct 357755 ACTATACTATCGAGGAT 357771
>seq106
Length=508607
Score = 98.7 bits (108), Expect = 1e-15
Identities = 72/83 (87%), Gaps = 2/83 (2%)
Strand=Plus/Plus
Query 60057 AAAAATTT--TCTCCTCGGCAGGGAATCGAACCCTGGTCTCCCGCGTGACAGGCGGACAT 60114
||||| || ||||| || | ||||||||||||| ||||||||||||||||||||| ||
Sbjct 82437 AAAAAGTTCCTCTCCCCGACGGGGAATCGAACCCCGGTCTCCCGCGTGACAGGCGGGGAT 82496
Query 60115 ACTCACCACTATACTACCGAGGA 60137
||| |||||||||||| ||||||
Sbjct 82497 ACTGACCACTATACTATCGAGGA 82519
>seq49
Length=1325362
Score = 98.7 bits (108), Expect = 1e-15
Identities = 68/77 (88%), Gaps = 0/77 (0%)
Strand=Plus/Plus
Query 60061 ATTTTCTCCTCGGCAGGGAATCGAACCCTGGTCTCCCGCGTGACAGGCGGACATACTCAC 60120
|||| |||| || | ||||||||||||| ||||||||||||||||||||| ||||| ||
Sbjct 624602 ATTTCCTCCCCGACGGGGAATCGAACCCCGGTCTCCCGCGTGACAGGCGGGGATACTGAC 624661
Query 60121 CACTATACTACCGAGGA 60137
|||||||||| ||||||
Sbjct 624662 CACTATACTATCGAGGA 624678
Score = 96.9 bits (106), Expect = 4e-15
Identities = 65/73 (89%), Gaps = 0/73 (0%)
Strand=Plus/Plus
Query 60066 CTCCTCGGCAGGGAATCGAACCCTGGTCTCCCGCGTGACAGGCGGACATACTCACCACTA 60125
|||| || | ||||||||||||| ||||||||||||||||||||| ||||| |||||||
Sbjct 624013 CTCCCCGACGGGGAATCGAACCCCGGTCTCCCGCGTGACAGGCGGGGATACTGACCACTA 624072
Query 60126 TACTACCGAGGAT 60138
||||| |||||||
Sbjct 624073 TACTATCGAGGAT 624085
Score = 96.9 bits (106), Expect = 4e-15
Identities = 65/73 (89%), Gaps = 0/73 (0%)
Strand=Plus/Plus
Query 60065 TCTCCTCGGCAGGGAATCGAACCCTGGTCTCCCGCGTGACAGGCGGACATACTCACCACT 60124
||||| || | ||||||||||||| ||||||||||||||||||||| ||||| ||||||
Sbjct 626055 TCTCCCCGACGGGGAATCGAACCCCGGTCTCCCGCGTGACAGGCGGGGATACTGACCACT 626114
Query 60125 ATACTACCGAGGA 60137
|||||| ||||||
Sbjct 626115 ATACTATCGAGGA 626127
Score = 96.9 bits (106), Expect = 4e-15
Identities = 67/76 (88%), Gaps = 0/76 (0%)
Strand=Plus/Plus
Query 60062 TTTTCTCCTCGGCAGGGAATCGAACCCTGGTCTCCCGCGTGACAGGCGGACATACTCACC 60121
|| ||||| || | ||||||||||||| ||||||||||||||||||||| ||||| |||
Sbjct 626741 TTATCTCCCCGACGGGGAATCGAACCCCGGTCTCCCGCGTGACAGGCGGGGATACTGACC 626800
Query 60122 ACTATACTACCGAGGA 60137
||||||||| ||||||
Sbjct 626801 ACTATACTATCGAGGA 626816
Score = 96.9 bits (106), Expect = 4e-15
Identities = 65/73 (89%), Gaps = 0/73 (0%)
Strand=Plus/Plus
Query 60066 CTCCTCGGCAGGGAATCGAACCCTGGTCTCCCGCGTGACAGGCGGACATACTCACCACTA 60125
|||| || | ||||||||||||| ||||||||||||||||||||| ||||| |||||||
Sbjct 627479 CTCCCCGACGGGGAATCGAACCCCGGTCTCCCGCGTGACAGGCGGGGATACTGACCACTA 627538
Query 60126 TACTACCGAGGAT 60138
||||| |||||||
Sbjct 627539 TACTATCGAGGAT 627551
Score = 95.1 bits (104), Expect = 1e-14
Identities = 64/72 (89%), Gaps = 0/72 (0%)
Strand=Plus/Plus
Query 60066 CTCCTCGGCAGGGAATCGAACCCTGGTCTCCCGCGTGACAGGCGGACATACTCACCACTA 60125
|||| || | ||||||||||||| ||||||||||||||||||||| ||||| |||||||
Sbjct 625435 CTCCCCGACGGGGAATCGAACCCCGGTCTCCCGCGTGACAGGCGGGGATACTGACCACTA 625494
Query 60126 TACTACCGAGGA 60137
||||| ||||||
Sbjct 625495 TACTATCGAGGA 625506
>seq74
Length=863053
Score = 96.9 bits (106), Expect = 4e-15
Identities = 67/76 (88%), Gaps = 0/76 (0%)
Strand=Plus/Minus
Query 60063 TTTCTCCTCGGCAGGGAATCGAACCCTGGTCTCCCGCGTGACAGGCGGACATACTCACCA 60122
|| |||| || | ||||||||||||| ||||||||||||||||||||| ||||| ||||
Sbjct 45059 TTCCTCCCCGACGGGGAATCGAACCCCGGTCTCCCGCGTGACAGGCGGGGATACTGACCA 45000
Query 60123 CTATACTACCGAGGAT 60138
|||||||| |||||||
Sbjct 44999 CTATACTATCGAGGAT 44984
Score = 95.1 bits (104), Expect = 1e-14
Identities = 64/72 (89%), Gaps = 0/72 (0%)
Strand=Plus/Minus
Query 60066 CTCCTCGGCAGGGAATCGAACCCTGGTCTCCCGCGTGACAGGCGGACATACTCACCACTA 60125
|||| || | ||||||||||||| ||||||||||||||||||||| ||||| |||||||
Sbjct 45856 CTCCCCGACGGGGAATCGAACCCCGGTCTCCCGCGTGACAGGCGGGGATACTGACCACTA 45797
Query 60126 TACTACCGAGGA 60137
||||| ||||||
Sbjct 45796 TACTATCGAGGA 45785
Score = 95.1 bits (104), Expect = 1e-14
Identities = 66/75 (88%), Gaps = 0/75 (0%)
Strand=Plus/Plus
Query 60066 CTCCTCGGCAGGGAATCGAACCCTGGTCTCCCGCGTGACAGGCGGACATACTCACCACTA 60125
|||| || | ||||||||||||| ||||||||||||||||||||| ||||| |||||||
Sbjct 808880 CTCCCCGACGGGGAATCGAACCCCGGTCTCCCGCGTGACAGGCGGGGATACTTACCACTA 808939
Query 60126 TACTACCGAGGATTG 60140
||||| |||||| ||
Sbjct 808940 TACTATCGAGGACTG 808954
>seq13
Length=2876150
Score = 96.9 bits (106), Expect = 4e-15
Identities = 67/76 (88%), Gaps = 0/76 (0%)
Strand=Plus/Minus
Query 60062 TTTTCTCCTCGGCAGGGAATCGAACCCTGGTCTCCCGCGTGACAGGCGGACATACTCACC 60121
||| |||| || | ||||||||||||| ||||||||||||||||||||| ||||| |||
Sbjct 1381517 TTTCCTCCCCGACGGGGAATCGAACCCCGGTCTCCCGCGTGACAGGCGGGGATACTGACC 1381458
Query 60122 ACTATACTACCGAGGA 60137
||||||||| ||||||
Sbjct 1381457 ACTATACTATCGAGGA 1381442
>seq1866
Length=2420
Score = 95.1 bits (104), Expect = 1e-14
Identities = 64/72 (89%), Gaps = 0/72 (0%)
Strand=Plus/Minus
Query 60066 CTCCTCGGCAGGGAATCGAACCCTGGTCTCCCGCGTGACAGGCGGACATACTCACCACTA 60125
|||| || | ||||||||||||| ||||||||||||||||||||| ||||| |||||||
Sbjct 1754 CTCCCCGACGGGGAATCGAACCCCGGTCTCCCGCGTGACAGGCGGGGATACTGACCACTA 1695
Query 60126 TACTACCGAGGA 60137
||||| ||||||
Sbjct 1694 TACTATCGAGGA 1683
>seq179
Length=86345
Score = 95.1 bits (104), Expect = 1e-14
Identities = 64/72 (89%), Gaps = 0/72 (0%)
Strand=Plus/Minus
Query 60066 CTCCTCGGCAGGGAATCGAACCCTGGTCTCCCGCGTGACAGGCGGACATACTCACCACTA 60125
|||| || | ||||||||||||| ||||||||||||||||||||| ||||| |||||||
Sbjct 8122 CTCCCCGACGGGGAATCGAACCCCGGTCTCCCGCGTGACAGGCGGGGATACTGACCACTA 8063
Query 60126 TACTACCGAGGA 60137
||||| ||||||
Sbjct 8062 TACTATCGAGGA 8051
>seq31
Length=1955281
Score = 95.1 bits (104), Expect = 1e-14
Identities = 64/72 (89%), Gaps = 0/72 (0%)
Strand=Plus/Minus
Query 60066 CTCCTCGGCAGGGAATCGAACCCTGGTCTCCCGCGTGACAGGCGGACATACTCACCACTA 60125
|||| || | ||||||||||||| ||||||||||||||||||||| ||||| |||||||
Sbjct 220215 CTCCCCGACGGGGAATCGAACCCCGGTCTCCCGCGTGACAGGCGGGGATACTGACCACTA 220156
Query 60126 TACTACCGAGGA 60137
||||| ||||||
Sbjct 220155 TACTATCGAGGA 220144
>seq6
Length=4219845
Score = 93.3 bits (102), Expect = 5e-14
Identities = 151/216 (70%), Gaps = 6/216 (3%)
Strand=Plus/Plus
Query 42974 CACCAAATGCAATGTGCTCTCCTTTTGAATATTGTAATCAGCCAGAGTCCGCTCGTCATC 43033
||||| ||| | || |||||| || || ||||| || | ||| || || |||| ||
Sbjct 2100936 CACCAGATGAAGGGTCGACTCCTTCTGGATGTTGTAGTCGGACAGGGTGCGTCCGTCCTC 2100995
Query 43034 TAGCTGCTTACCAGCGAATATGAGTCGCTGCTGGTCGGCCGGCACGCTCTCCTTGTCCAT 43093
||||||||||| ||||| || || |||||||| || | ||| | || ||||||||||
Sbjct 2100996 CAGCTGCTTACCGGCGAAGATCAGACGCTGCTGATCCGGCGGGATGCCCTCCTTGTCCTG 2101055
Query 43094 GATTTTTTGTTTGAGCGTCGCCACCGTGTCGCTCGAT---TCCACATCGACCGTGATGGT 43150
||| || || | || | | ||| || |||| || || || | || |||||
Sbjct 2101056 GATCTTCGCCTTCACATTCTCGATCGTATC---CGATGGCTCGACCTCAAGAGTAATGGT 2101112
Query 43151 TTTGCCCGTTAGCGTCTTTACAAAGATTTGCATTTT 43186
|| ||||| || || || || ||||| ||||| ||
Sbjct 2101113 CTTACCCGTGAGGGTTTTGACGAAGATCTGCATCTT 2101148
>seq1
Length=5975090
Score = 84.2 bits (92), Expect = 3e-11
Identities = 148/213 (69%), Gaps = 2/213 (1%)
Strand=Plus/Minus
Query 42975 ACCAAATGCAATGTGCTCTCCTTTTGAATATTGTAATCAGCCAGAGTCCGCTCGTCATCT 43034
|||| ||| | ||| ||||| || || || || || | ||| || || | || ||
Sbjct 5042914 ACCAGATGGAGGGTGGATTCCTTCTGGATGTTATAGTCCGACAGGGTGCGGCCATCTTCC 5042855
Query 43035 AGCTGCTTACCAGCGAATATGAGTCGCTGCTGGTCGGCCGGCACGCTCTCCTTGTCCATG 43094
|||||||||||||| || || || |||||||| || | ||| | | |||||||||| ||
Sbjct 5042854 AGCTGCTTACCAGCAAAGATCAGACGCTGCTGATCTGGCGGGATTCCCTCCTTGTCC-TG 5042796
Query 43095 ATTTTTTG-TTTGAGCGTCGCCACCGTGTCGCTCGATTCCACATCGACCGTGATGGTTTT 43153
| | || | || | || | | |||||| | || || || | ||||| || ||
Sbjct 5042795 AATCTTGGCCTTCACATTCTCGATGGTGTCGGATGGCTCAACCTCAAGGGTGATAGTCTT 5042736
Query 43154 GCCCGTTAGCGTCTTTACAAAGATTTGCATTTT 43186
|| || || ||||| || ||||||||||| ||
Sbjct 5042735 TCCGGTCAGAGTCTTGACGAAGATTTGCATGTT 5042703
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 571650550635880
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |