Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Anopheles_20stephensi_20[genbank_20GCA_5F000300775.2_202013-07-19] 23,371 sequences; 221,324,304 total letters Query= NC_002331.1 Length=178733 Score E Sequences producing significant alignments: (Bits) Value seq154 104 3e-17 seq107 98.7 1e-15 seq106 98.7 1e-15 seq49 98.7 1e-15 seq74 96.9 4e-15 seq13 96.9 4e-15 seq1866 95.1 1e-14 seq179 95.1 1e-14 seq31 95.1 1e-14 seq6 93.3 5e-14 seq1 84.2 3e-11 >seq154 Length=155269 Score = 104 bits (114), Expect = 3e-17 Identities = 69/77 (90%), Gaps = 0/77 (0%) Strand=Plus/Minus Query 60061 ATTTTCTCCTCGGCAGGGAATCGAACCCTGGTCTCCCGCGTGACAGGCGGACATACTCAC 60120 ||||||||| || | ||||||||||||| ||||||||||||||||||||| ||||| || Sbjct 83724 ATTTTCTCCCCGACGGGGAATCGAACCCCGGTCTCCCGCGTGACAGGCGGGGATACTGAC 83665 Query 60121 CACTATACTACCGAGGA 60137 |||||||||| |||||| Sbjct 83664 CACTATACTATCGAGGA 83648 >seq107 Length=506788 Score = 98.7 bits (108), Expect = 1e-15 Identities = 68/77 (88%), Gaps = 0/77 (0%) Strand=Plus/Plus Query 60062 TTTTCTCCTCGGCAGGGAATCGAACCCTGGTCTCCCGCGTGACAGGCGGACATACTCACC 60121 || ||||| || | ||||||||||||| ||||||||||||||||||||| ||||| ||| Sbjct 357695 TTCTCTCCCCGACGGGGAATCGAACCCCGGTCTCCCGCGTGACAGGCGGGGATACTGACC 357754 Query 60122 ACTATACTACCGAGGAT 60138 ||||||||| ||||||| Sbjct 357755 ACTATACTATCGAGGAT 357771 >seq106 Length=508607 Score = 98.7 bits (108), Expect = 1e-15 Identities = 72/83 (87%), Gaps = 2/83 (2%) Strand=Plus/Plus Query 60057 AAAAATTT--TCTCCTCGGCAGGGAATCGAACCCTGGTCTCCCGCGTGACAGGCGGACAT 60114 ||||| || ||||| || | ||||||||||||| ||||||||||||||||||||| || Sbjct 82437 AAAAAGTTCCTCTCCCCGACGGGGAATCGAACCCCGGTCTCCCGCGTGACAGGCGGGGAT 82496 Query 60115 ACTCACCACTATACTACCGAGGA 60137 ||| |||||||||||| |||||| Sbjct 82497 ACTGACCACTATACTATCGAGGA 82519 >seq49 Length=1325362 Score = 98.7 bits (108), Expect = 1e-15 Identities = 68/77 (88%), Gaps = 0/77 (0%) Strand=Plus/Plus Query 60061 ATTTTCTCCTCGGCAGGGAATCGAACCCTGGTCTCCCGCGTGACAGGCGGACATACTCAC 60120 |||| |||| || | ||||||||||||| ||||||||||||||||||||| ||||| || Sbjct 624602 ATTTCCTCCCCGACGGGGAATCGAACCCCGGTCTCCCGCGTGACAGGCGGGGATACTGAC 624661 Query 60121 CACTATACTACCGAGGA 60137 |||||||||| |||||| Sbjct 624662 CACTATACTATCGAGGA 624678 Score = 96.9 bits (106), Expect = 4e-15 Identities = 65/73 (89%), Gaps = 0/73 (0%) Strand=Plus/Plus Query 60066 CTCCTCGGCAGGGAATCGAACCCTGGTCTCCCGCGTGACAGGCGGACATACTCACCACTA 60125 |||| || | ||||||||||||| ||||||||||||||||||||| ||||| ||||||| Sbjct 624013 CTCCCCGACGGGGAATCGAACCCCGGTCTCCCGCGTGACAGGCGGGGATACTGACCACTA 624072 Query 60126 TACTACCGAGGAT 60138 ||||| ||||||| Sbjct 624073 TACTATCGAGGAT 624085 Score = 96.9 bits (106), Expect = 4e-15 Identities = 65/73 (89%), Gaps = 0/73 (0%) Strand=Plus/Plus Query 60065 TCTCCTCGGCAGGGAATCGAACCCTGGTCTCCCGCGTGACAGGCGGACATACTCACCACT 60124 ||||| || | ||||||||||||| ||||||||||||||||||||| ||||| |||||| Sbjct 626055 TCTCCCCGACGGGGAATCGAACCCCGGTCTCCCGCGTGACAGGCGGGGATACTGACCACT 626114 Query 60125 ATACTACCGAGGA 60137 |||||| |||||| Sbjct 626115 ATACTATCGAGGA 626127 Score = 96.9 bits (106), Expect = 4e-15 Identities = 67/76 (88%), Gaps = 0/76 (0%) Strand=Plus/Plus Query 60062 TTTTCTCCTCGGCAGGGAATCGAACCCTGGTCTCCCGCGTGACAGGCGGACATACTCACC 60121 || ||||| || | ||||||||||||| ||||||||||||||||||||| ||||| ||| Sbjct 626741 TTATCTCCCCGACGGGGAATCGAACCCCGGTCTCCCGCGTGACAGGCGGGGATACTGACC 626800 Query 60122 ACTATACTACCGAGGA 60137 ||||||||| |||||| Sbjct 626801 ACTATACTATCGAGGA 626816 Score = 96.9 bits (106), Expect = 4e-15 Identities = 65/73 (89%), Gaps = 0/73 (0%) Strand=Plus/Plus Query 60066 CTCCTCGGCAGGGAATCGAACCCTGGTCTCCCGCGTGACAGGCGGACATACTCACCACTA 60125 |||| || | ||||||||||||| ||||||||||||||||||||| ||||| ||||||| Sbjct 627479 CTCCCCGACGGGGAATCGAACCCCGGTCTCCCGCGTGACAGGCGGGGATACTGACCACTA 627538 Query 60126 TACTACCGAGGAT 60138 ||||| ||||||| Sbjct 627539 TACTATCGAGGAT 627551 Score = 95.1 bits (104), Expect = 1e-14 Identities = 64/72 (89%), Gaps = 0/72 (0%) Strand=Plus/Plus Query 60066 CTCCTCGGCAGGGAATCGAACCCTGGTCTCCCGCGTGACAGGCGGACATACTCACCACTA 60125 |||| || | ||||||||||||| ||||||||||||||||||||| ||||| ||||||| Sbjct 625435 CTCCCCGACGGGGAATCGAACCCCGGTCTCCCGCGTGACAGGCGGGGATACTGACCACTA 625494 Query 60126 TACTACCGAGGA 60137 ||||| |||||| Sbjct 625495 TACTATCGAGGA 625506 >seq74 Length=863053 Score = 96.9 bits (106), Expect = 4e-15 Identities = 67/76 (88%), Gaps = 0/76 (0%) Strand=Plus/Minus Query 60063 TTTCTCCTCGGCAGGGAATCGAACCCTGGTCTCCCGCGTGACAGGCGGACATACTCACCA 60122 || |||| || | ||||||||||||| ||||||||||||||||||||| ||||| |||| Sbjct 45059 TTCCTCCCCGACGGGGAATCGAACCCCGGTCTCCCGCGTGACAGGCGGGGATACTGACCA 45000 Query 60123 CTATACTACCGAGGAT 60138 |||||||| ||||||| Sbjct 44999 CTATACTATCGAGGAT 44984 Score = 95.1 bits (104), Expect = 1e-14 Identities = 64/72 (89%), Gaps = 0/72 (0%) Strand=Plus/Minus Query 60066 CTCCTCGGCAGGGAATCGAACCCTGGTCTCCCGCGTGACAGGCGGACATACTCACCACTA 60125 |||| || | ||||||||||||| ||||||||||||||||||||| ||||| ||||||| Sbjct 45856 CTCCCCGACGGGGAATCGAACCCCGGTCTCCCGCGTGACAGGCGGGGATACTGACCACTA 45797 Query 60126 TACTACCGAGGA 60137 ||||| |||||| Sbjct 45796 TACTATCGAGGA 45785 Score = 95.1 bits (104), Expect = 1e-14 Identities = 66/75 (88%), Gaps = 0/75 (0%) Strand=Plus/Plus Query 60066 CTCCTCGGCAGGGAATCGAACCCTGGTCTCCCGCGTGACAGGCGGACATACTCACCACTA 60125 |||| || | ||||||||||||| ||||||||||||||||||||| ||||| ||||||| Sbjct 808880 CTCCCCGACGGGGAATCGAACCCCGGTCTCCCGCGTGACAGGCGGGGATACTTACCACTA 808939 Query 60126 TACTACCGAGGATTG 60140 ||||| |||||| || Sbjct 808940 TACTATCGAGGACTG 808954 >seq13 Length=2876150 Score = 96.9 bits (106), Expect = 4e-15 Identities = 67/76 (88%), Gaps = 0/76 (0%) Strand=Plus/Minus Query 60062 TTTTCTCCTCGGCAGGGAATCGAACCCTGGTCTCCCGCGTGACAGGCGGACATACTCACC 60121 ||| |||| || | ||||||||||||| ||||||||||||||||||||| ||||| ||| Sbjct 1381517 TTTCCTCCCCGACGGGGAATCGAACCCCGGTCTCCCGCGTGACAGGCGGGGATACTGACC 1381458 Query 60122 ACTATACTACCGAGGA 60137 ||||||||| |||||| Sbjct 1381457 ACTATACTATCGAGGA 1381442 >seq1866 Length=2420 Score = 95.1 bits (104), Expect = 1e-14 Identities = 64/72 (89%), Gaps = 0/72 (0%) Strand=Plus/Minus Query 60066 CTCCTCGGCAGGGAATCGAACCCTGGTCTCCCGCGTGACAGGCGGACATACTCACCACTA 60125 |||| || | ||||||||||||| ||||||||||||||||||||| ||||| ||||||| Sbjct 1754 CTCCCCGACGGGGAATCGAACCCCGGTCTCCCGCGTGACAGGCGGGGATACTGACCACTA 1695 Query 60126 TACTACCGAGGA 60137 ||||| |||||| Sbjct 1694 TACTATCGAGGA 1683 >seq179 Length=86345 Score = 95.1 bits (104), Expect = 1e-14 Identities = 64/72 (89%), Gaps = 0/72 (0%) Strand=Plus/Minus Query 60066 CTCCTCGGCAGGGAATCGAACCCTGGTCTCCCGCGTGACAGGCGGACATACTCACCACTA 60125 |||| || | ||||||||||||| ||||||||||||||||||||| ||||| ||||||| Sbjct 8122 CTCCCCGACGGGGAATCGAACCCCGGTCTCCCGCGTGACAGGCGGGGATACTGACCACTA 8063 Query 60126 TACTACCGAGGA 60137 ||||| |||||| Sbjct 8062 TACTATCGAGGA 8051 >seq31 Length=1955281 Score = 95.1 bits (104), Expect = 1e-14 Identities = 64/72 (89%), Gaps = 0/72 (0%) Strand=Plus/Minus Query 60066 CTCCTCGGCAGGGAATCGAACCCTGGTCTCCCGCGTGACAGGCGGACATACTCACCACTA 60125 |||| || | ||||||||||||| ||||||||||||||||||||| ||||| ||||||| Sbjct 220215 CTCCCCGACGGGGAATCGAACCCCGGTCTCCCGCGTGACAGGCGGGGATACTGACCACTA 220156 Query 60126 TACTACCGAGGA 60137 ||||| |||||| Sbjct 220155 TACTATCGAGGA 220144 >seq6 Length=4219845 Score = 93.3 bits (102), Expect = 5e-14 Identities = 151/216 (70%), Gaps = 6/216 (3%) Strand=Plus/Plus Query 42974 CACCAAATGCAATGTGCTCTCCTTTTGAATATTGTAATCAGCCAGAGTCCGCTCGTCATC 43033 ||||| ||| | || |||||| || || ||||| || | ||| || || |||| || Sbjct 2100936 CACCAGATGAAGGGTCGACTCCTTCTGGATGTTGTAGTCGGACAGGGTGCGTCCGTCCTC 2100995 Query 43034 TAGCTGCTTACCAGCGAATATGAGTCGCTGCTGGTCGGCCGGCACGCTCTCCTTGTCCAT 43093 ||||||||||| ||||| || || |||||||| || | ||| | || |||||||||| Sbjct 2100996 CAGCTGCTTACCGGCGAAGATCAGACGCTGCTGATCCGGCGGGATGCCCTCCTTGTCCTG 2101055 Query 43094 GATTTTTTGTTTGAGCGTCGCCACCGTGTCGCTCGAT---TCCACATCGACCGTGATGGT 43150 ||| || || | || | | ||| || |||| || || || | || ||||| Sbjct 2101056 GATCTTCGCCTTCACATTCTCGATCGTATC---CGATGGCTCGACCTCAAGAGTAATGGT 2101112 Query 43151 TTTGCCCGTTAGCGTCTTTACAAAGATTTGCATTTT 43186 || ||||| || || || || ||||| ||||| || Sbjct 2101113 CTTACCCGTGAGGGTTTTGACGAAGATCTGCATCTT 2101148 >seq1 Length=5975090 Score = 84.2 bits (92), Expect = 3e-11 Identities = 148/213 (69%), Gaps = 2/213 (1%) Strand=Plus/Minus Query 42975 ACCAAATGCAATGTGCTCTCCTTTTGAATATTGTAATCAGCCAGAGTCCGCTCGTCATCT 43034 |||| ||| | ||| ||||| || || || || || | ||| || || | || || Sbjct 5042914 ACCAGATGGAGGGTGGATTCCTTCTGGATGTTATAGTCCGACAGGGTGCGGCCATCTTCC 5042855 Query 43035 AGCTGCTTACCAGCGAATATGAGTCGCTGCTGGTCGGCCGGCACGCTCTCCTTGTCCATG 43094 |||||||||||||| || || || |||||||| || | ||| | | |||||||||| || Sbjct 5042854 AGCTGCTTACCAGCAAAGATCAGACGCTGCTGATCTGGCGGGATTCCCTCCTTGTCC-TG 5042796 Query 43095 ATTTTTTG-TTTGAGCGTCGCCACCGTGTCGCTCGATTCCACATCGACCGTGATGGTTTT 43153 | | || | || | || | | |||||| | || || || | ||||| || || Sbjct 5042795 AATCTTGGCCTTCACATTCTCGATGGTGTCGGATGGCTCAACCTCAAGGGTGATAGTCTT 5042736 Query 43154 GCCCGTTAGCGTCTTTACAAAGATTTGCATTTT 43186 || || || ||||| || ||||||||||| || Sbjct 5042735 TCCGGTCAGAGTCTTGACGAAGATTTGCATGTT 5042703 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 571650550635880