Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Anopheles_20stephensi_20[genbank_20GCA_5F000300775.2_202013-07-19] 23,371 sequences; 221,324,304 total letters Query= NC_002642.1 Length=144575 Score E Sequences producing significant alignments: (Bits) Value seq24 111 1e-19 >seq24 Length=2206587 Score = 111 bits (122), Expect = 1e-19 Identities = 241/356 (68%), Gaps = 6/356 (2%) Strand=Plus/Plus Query 16040 TTATCGCATCCCAATTCCAACAATAATCTATCCGCCACAAATTCTATATACTGTTTCATT 16099 || || || ||||| |||| || || | |||||||||||| || || ||||| ||| Sbjct 1947376 TTGTCACAGCCCAACTCCAGCAGCAAACGATCCGCCACAAACTCAATGTACTGCGACATC 1947435 Query 16100 AAATCACAGTTCATTCCTATTAATTTAACAGGGATTGCTTCTGTTAAAAAAtttttttCT 16159 | |||||| ||||| || | | | || || | |||| || ||||| | || || Sbjct 1947436 AGATCACAATTCATGCCGAGCATATCGACCGGCAGGGCTTTCGTCAAAAATTCTTGCTCG 1947495 Query 16160 ATATTAACCGCTTCAATGATTATATCTCTTACTACACTATTTAACGGAGGGTTTAATA-- 16217 || ||||| || ||| || || | || | || || || ||| || | Sbjct 1947496 ATCACTACCGCATCGCGGATGATCTCCGTCACG-CGCTCCTT--CGAAGGCTTCTGCACC 1947552 Query 16218 AG-TGTTTAAACATTATACAAGCAAAATCACAATGCAATCCTTCGTCCCTACTTATTAAC 16276 || | || ||||| | || || ||||||||||||||||| |||||||| || | | Sbjct 1947553 AGATACTTGAACATCAGGCAGGCGAAATCACAATGCAATCCCTCGTCCCTCGAAATCAGC 1947612 Query 16277 TCGTTTGAAAATGTAAGACCTGGCATTAGTCCTCGTTTTTTAATCCAAAATATAGCGGCA 16336 ||||| || || |||||||| ||||| || || || || || | ||| || || | ||| Sbjct 1947613 TCGTTCGAGAAGGTAAGACCCGGCATAAGGCCACGCTTCTTGAGCCAGAAGATGGACGCA 1947672 Query 16337 AATGAACCAGAAAAGAATATACCTTCAACTGCGGCAAATGCAACCAATCGCTCACC 16392 || || ||||| ||||| || || || |||||||| |||| ||||| || Sbjct 1947673 AAGCTGCCGCTGAAGAAGATACCCTCGACGGCAGCAAATGCGACCACACGCTCGCC 1947728 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 462376882900600