Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Anopheles_20stephensi_20[genbank_20GCA_5F000300775.2_202013-07-19] 23,371 sequences; 221,324,304 total letters Query= NC_003310.1 Length=196858 Score E Sequences producing significant alignments: (Bits) Value seq59 398 1e-105 seq24 123 3e-23 >seq59 Length=1145648 Score = 398 bits (440), Expect = 1e-105 Identities = 1208/1853 (65%), Gaps = 28/1853 (2%) Strand=Plus/Plus Query 62067 GCGGGTTTCGTACGTAGATAGTACATTCCCGTTTTTAGACCGAGACTCCATCCGTAAAAA 62126 || ||||| || || ||||||||||| |||||||| || || | |||| |||||||| Sbjct 140766 GCCGGTTTTGTTCGCAGATAGTACATGCCCGTTTTCAGTCCCATTTTCCAGCCGTAAAAG 140825 Query 62127 TGCATACTCGTTAGTTTGGAATAACTCGGATCTGCTATATGGATATTCATAGATTGACTT 62186 || || || || ||| ||| |||| || || | || || || | ||||| Sbjct 140826 TGGATCGATGTCAGCTTGCCATAGTTCGGTTCGGCCACGTGTATGTTGAACGATTGCGAC 140885 Query 62187 TGATCGATGAAGGCTCCCCTGTCTGCAGCCATTTTTATGATCGTCTTTTGTGCAATTTCC 62246 |||||||| || || |||| ||| |||||||| || ||| ||| || | ||| ||| Sbjct 140886 TGATCGATAAACGCACCCCGGTCAGCAGCCATCTTAATGCACGTTTTAACCGAAATCTCC 140945 Query 62247 CAAATAGTTTTATAAAC-TCGCTTAATATCTTCTGGAAGGTTTGTATTCT--GAATGGAT 62303 || | ||||| || | |||| || | |||| | | | || || || |||| ||| Sbjct 140946 CACACCGTTTTGTACAGATCGCGTATTTCCTTCGGTATCGATTCGATGCTTTGAATCGAT 141005 Query 62304 CCACCATCTACCATAATCCTATTCTTGATCTCATCATTCCATAATTTTCTCTCGGTTAAA 62363 || | || ||| ||||| || || || ||| | || | || ||| Sbjct 141006 CCGTTGTTGGACAGAATTTGGTTCTTCATGTCTAGATCCCACAGACCCATCGCTGTCAAA 141065 Query 62364 ACTCTAAGGAGATGCGGGTTAACTACTTGGAATTCTCCAGACAATACTCTCCGAGTGTAA 62423 || || ||||| |||| || || || || || || || | ||| | |||| ||||| Sbjct 141066 TCTTGCAGCAGATGGTGGTTCACCACCTGAAACTCGCCGGAAAGTACACGCCGATTGTAA 141125 Query 62424 ATATTACTGGTATACGGTTCCACCGACTCATTATTTCCCAAAATTTGAGCAGTTGATGCA 62483 | || || |||||||| | ||||| || || ||||| ||||| || || || || Sbjct 141126 ACGTTGGACGTGTACGGTTCGAAGGACTCGTTGTTACCCAAGATTTGTGCCGTCGAAGCG 141185 Query 62484 GTCGGCATAGGTGCCACCAATAAACTATTTCTAAGACCGTATGTTCTGATTTTATCTTTT 62543 || ||||| ||||||| || | ||| | | |||| || ||||| || || Sbjct 141186 GTAGGCATCGGTGCCAACAGCAGCGAATTGCGGATGCCGTGCTTTGCAATTTTTTCCTTC 141245 Query 62544 AGATGTTCCCAATTCCAAAGATCCGACGGTACAACANNNNNNNNNNNATATTGTAGAATA 62603 | | ||||||||||||||||||||||| | || || || || Sbjct 141246 AACTCGGCCCAATTCCAAAGATCCGACGGTTCCTTCTTCCACATTTCGTACTGCAGGATG 141305 Query 62604 CCGTTACTGGC-GTACGATCCTACATATGTATCATATGGTCCTTCCTTCTCAGCTAGTTT 62662 || || || | | || ||| | || || || || ||||| || | || | | Sbjct 141306 CCTTTGCTTACCGGACTC-CCTTCGTACGTTTCGTACGGTCCGTCGCGGGCGGCCAACTC 141364 Query 62663 ACAACTCGCCTCTAATGCACCGTAATAAATGGTTTCAAAGATCTTCTTATTTAGATCTTG 62722 ||| ||||| || ||||| ||||| || || ||||| || || | | || || | ||| Sbjct 141365 ACAGCTCGCTTCCAATGCTCCGTAGTAGATTGTTTCGAAAATTTGTTGGTTCAGCTTTTG 141424 Query 62723 TGCTTCCGGGCTATCAAATGGATAATTTAAGAGAATAAACGCGTCCGCTAATCCTTGAAC 62782 || ||| ||| || | ||||| | | ||| ||||| || || | || ||||| Sbjct 141425 GGCCTCCTCGCTTTCGTACGGATAGCGCATCAAAATGAACGCATCGGCCATGCCCTGAAC 141484 Query 62783 ACCAATACCGATAGGTCTATGTCTCTTATTAGAGATTTCAGCTTCTGGAATAGGATAATA 62842 ||| |||||||| || || || | | | || ||| | || || || | ||||| || Sbjct 141485 ACCGATACCGATCGGCCTGTGCCGCATGTTGGAGCGCTTCGCCTCCGGTACTGGATAGTA 141544 Query 62843 ATTAATATCTATAATTTTATTGAGATTTCT-GACAATTACTTTGACCACATCCTTCAGTT 62901 || ||||| |||||||| || ||||| | | ||| ||| | | ||||||||||| | Sbjct 141545 GTTTATATCGATAATTTTGTTCAGATTGCGCGTCAAAATCTTCG-CGACATCCTTCAGCT 141603 Query 62902 TGAGAAAATCAAA----TCGCCCATCTATTACAAACATGTTCAATGCAACAGATGCCAGA 62957 || ||| || | | | || | | ||||||||||||| || | || |||| | Sbjct 141604 TGGCAAAGTCGTACGTTTTGTCCGGTT-TCACAAACATGTTCAGCGCGATCGAGGCCAAA 141662 Query 62958 TTACACACGGCTACCTCATTAGCATC--CGCATATTGTATTATCTCAGTGCAAAGATTAC 63015 || ||||| |||| |||| | || || || | | |||||| || || ||||| Sbjct 141663 TTGCACACCGCTATTTCATC--CTTCGACGAGTACTCCACTATCTCGGTACACAGATTGG 141720 Query 63016 TACACTTGATAGTTCCTAAATTTTGTTGATTACTCTTTTTGTTACACGCATCCTTATAAA 63075 |||||| || || || | || || ||||| ||||| ||| ||||||||||| || | Sbjct 141721 AACACTTTATGGTGCCGATGTTCTGCTGATTGCTCTTGCGGTTGCACGCATCCTTGTACA 141780 Query 63076 GAATGAATGGAGTACCAGTTTCAATCTGAGATTCTATAATCGCTTTCCAGACGACTCGAG 63135 | ||| | ||| || ||||| | ||| ||||| || || || ||| | | | | | Sbjct 141781 GCATGTACGGAACGCCCGTTTCCACCTGCGATTCGATGATGGCAAACCATAGGTCCTGTG 141840 Query 63136 CCTTTATTATAGATTTGTATCTCCTTTCTCTTTCGTATAGAGTATACAATCGTTCGAACT 63195 |||| | | | ||| | || ||||| ||| |||| ||||||| Sbjct 141841 CCTTCACCTGGCGTATAAATCGACCCTCCTGCTCGTACCCAGTGTACAGCTTCTCGAACT 141900 Query 63196 CGTCTCCCCAAACATTGTCCAATCTAGGACATTCATCCGGACACATCAACGACCACTCTC 63255 | || |||||| | |||||| || || || | || ||||||| |||| | Sbjct 141901 CTTCGCCCCAAGTGTCAGCCAATCCGGGGCAGTCGTGTGGGCACATCAGGCTCCACATTT 141960 Query 63256 CGTCATCCTTCACTCGTTTCATAAAGAGATCAGGAATCCAAAGAGCTATAAATAGATCTC 63315 ||| ||| ||| || | ||| || ||||| || ||||| || || || | || | Sbjct 141961 CGTTCGCCTCCACACGCTGCATGAACAGATCCGGGATCCACAGGGCGTAGAACATGTCGC 142020 Query 63316 TTGTTCTATGTTCCTCGTTTCCTGTATTCTTTTTAAGATCGAGGAACGCCATAATATCAG 63375 | | ||||| || || || || || || ||||| || ||| | | ||||| Sbjct 142021 GGGCACGCACCTCCTCCTTGCCGGTGTTTTTCTTCAGATCCAGAAACTCGAATATATCCC 142080 Query 63376 AATGCCACGGTTCCAAGTATATGGCCATAACTCCAGGCCGTTTGTTTCCTCCCTGATCTA 63435 ||||| ||||| | ||| ||||| | | || ||||| ||||| || |||||||| | Sbjct 142081 CGTGCCATGGTTCGAGGTAGATGGCAAAGGCGCCGGGCCGCTTGTTGCCACCCTGATCCA 142140 Query 63436 TGTATCTAGCGGTGTTATTATAAACTCTCAACATTGGAATAATACCGTTTGATATACCAT 63495 ||| | || ||||| || ||||| | || ||| || | | ||||| || || |||| Sbjct 142141 CGTACCGGGCCGTGTTGTTGTAAACGCGCAGCATCGGCACCAACCCGTTCGAAATCCCAT 142200 Query 63496 TGGTACCGGAGATATAGCCTCCACTGGCACGAAT--ATTACTAATTGATAGACCTATTCC 63553 | || |||||||| || ||| |||| ||||| | | | || | | || || || Sbjct 142201 TCGTGCCGGAGATGTACGTTCCTTTGGCGCGAATGCAGTGCACGTTCA--GCCCGATACC 142258 Query 63554 CCCTGCCATTTTAGAGATTAATGCGCATCGTTTTAACGTGTCATAGATGCCTTCTATGCT 63613 || ||| ||| || || | ||| || | |||| ||| || || || || || || || Sbjct 142259 GCCGGCCGATTTGGAAATCAGTGCACACTGCTTTAGCGTATCGTAAATACCCTCAATACT 142318 Query 63614 ATCATCGATCATGTTAAGTAGAAAACAGCTAGACATTTGGTGACGA---GTAGTTCCCGC 63670 || || |||| |||| ||||| || || | || |||| |||| |||| Sbjct 142319 GTCGTCCGACATGGTAAGCAGAAAGCAAGACGAAAGCTGCGGACGCTGCGTAGCGGCCGC 142378 Query 63671 ATTAAATAAGGTAGGAGAAGCGTGCGTAAACCATTTTTCAGAAAGTAGATTGTACGTCTC 63730 | || | ||| || || || || ||||| | || ||||| |||||||||||||| Sbjct 142379 A---AACATGGTCGGTGAGGCATGGGTAAAGTAGCGCTCGGAAAGCAGATTGTACGTCTC 142435 Query 63731 AATAGCTGAGTCTATATC-CCATTGATGAATTCCTACTGCGACACGCATTAACATGTGCT 63789 || || | || || || || | ||||| || | || || ||||| | |||||| | Sbjct 142436 GATGGCAGCATCAATGTCTTCACCG-TGAATACCGATGGCAACGCGCATCAGCATGTGTT 142494 Query 63790 GAGGTCTTTCAACAATTTTGTTGTTTATTTTCAACAAGTAGGATTTTTCCAAAGTTTTAA 63849 | |||| || ||||| || || || |||| ||| ||||| |||| ||||| | Sbjct 142495 GCGGTCGCTCCACAATCTTACCCTTGATCTTCAGCAAATAGGAACGCTCCAGTGTTTTGA 142554 Query 63850 AACCAAAATAGTTGTATGAAAAGTCTCGTTCGTAAATAATAACCGAATTGAGC 63902 | || ||||||||||| || || || |||||||| || |||| || ||| Sbjct 142555 AGCCGAAATAGTTGTACCCGAAATCACGGTCGTAAATGATGGCCGAGTTCAGC 142607 >seq24 Length=2206587 Score = 123 bits (136), Expect = 3e-23 Identities = 183/258 (71%), Gaps = 5/258 (2%) Strand=Plus/Plus Query 33570 TTAAACATCAAACATGCGAAATCGCAGTGCAGACCCTCGTCTCTACTAATTAATTCGTTA 33629 || ||||||| || |||||||| || |||| |||||||| || ||| | ||||| Sbjct 1947559 TTGAACATCAGGCAGGCGAAATCACAATGCAATCCCTCGTCCCTCGAAATCAGCTCGTTC 1947618 Query 33630 GAAAACGTGAGTCCGGGCATTAGGCCACGCTTTTTAAGCCAAAATATGGAAGCGAATGAT 33689 || || || || || ||||| ||||||||||| || ||||| || ||||| || || Sbjct 1947619 GAGAAGGTAAGACCCGGCATAAGGCCACGCTTCTTGAGCCAGAAGATGGACGCAAAGCTG 1947678 Query 33690 CCGGAAAAGAAGATTCCTTCTACTGCAGCAAAGGCAATAAGTCTCTCTCCA----TAACC 33745 ||| |||||||| || || || |||||||| || | | | ||| ||| || || Sbjct 1947679 CCGCTGAAGAAGATACCCTCGACGGCAGCAAATGCGACCACACGCTCGCCAAAGTTAGCC 1947738 Query 33746 GGCGCTGTCATGTATCCACTTTTGAGCCCAATCGGCCTTCTTTTTTACACAAGGCATCGT 33805 | || | ||||| || | ||||| || |||||||| || || || || | ||| Sbjct 1947739 TTCTTGCTCGAG-ATCCAGTTAAGCGCCCAGTCTGCCTTCTTCTTCACGCACGGTAGCGT 1947797 Query 33806 TTCTATGGCATTAAAGAG 33823 ||| ||||||||||| || Sbjct 1947798 TTCGATGGCATTAAACAG 1947815 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 629633606660880