Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Anopheles_20stephensi_20[genbank_20GCA_5F000300775.2_202013-07-19]
23,371 sequences; 221,324,304 total letters
Query= NC_003310.1
Length=196858
Score E
Sequences producing significant alignments: (Bits) Value
seq59 398 1e-105
seq24 123 3e-23
>seq59
Length=1145648
Score = 398 bits (440), Expect = 1e-105
Identities = 1208/1853 (65%), Gaps = 28/1853 (2%)
Strand=Plus/Plus
Query 62067 GCGGGTTTCGTACGTAGATAGTACATTCCCGTTTTTAGACCGAGACTCCATCCGTAAAAA 62126
|| ||||| || || ||||||||||| |||||||| || || | |||| ||||||||
Sbjct 140766 GCCGGTTTTGTTCGCAGATAGTACATGCCCGTTTTCAGTCCCATTTTCCAGCCGTAAAAG 140825
Query 62127 TGCATACTCGTTAGTTTGGAATAACTCGGATCTGCTATATGGATATTCATAGATTGACTT 62186
|| || || || ||| ||| |||| || || | || || || | |||||
Sbjct 140826 TGGATCGATGTCAGCTTGCCATAGTTCGGTTCGGCCACGTGTATGTTGAACGATTGCGAC 140885
Query 62187 TGATCGATGAAGGCTCCCCTGTCTGCAGCCATTTTTATGATCGTCTTTTGTGCAATTTCC 62246
|||||||| || || |||| ||| |||||||| || ||| ||| || | ||| |||
Sbjct 140886 TGATCGATAAACGCACCCCGGTCAGCAGCCATCTTAATGCACGTTTTAACCGAAATCTCC 140945
Query 62247 CAAATAGTTTTATAAAC-TCGCTTAATATCTTCTGGAAGGTTTGTATTCT--GAATGGAT 62303
|| | ||||| || | |||| || | |||| | | | || || || |||| |||
Sbjct 140946 CACACCGTTTTGTACAGATCGCGTATTTCCTTCGGTATCGATTCGATGCTTTGAATCGAT 141005
Query 62304 CCACCATCTACCATAATCCTATTCTTGATCTCATCATTCCATAATTTTCTCTCGGTTAAA 62363
|| | || ||| ||||| || || || ||| | || | || |||
Sbjct 141006 CCGTTGTTGGACAGAATTTGGTTCTTCATGTCTAGATCCCACAGACCCATCGCTGTCAAA 141065
Query 62364 ACTCTAAGGAGATGCGGGTTAACTACTTGGAATTCTCCAGACAATACTCTCCGAGTGTAA 62423
|| || ||||| |||| || || || || || || || | ||| | |||| |||||
Sbjct 141066 TCTTGCAGCAGATGGTGGTTCACCACCTGAAACTCGCCGGAAAGTACACGCCGATTGTAA 141125
Query 62424 ATATTACTGGTATACGGTTCCACCGACTCATTATTTCCCAAAATTTGAGCAGTTGATGCA 62483
| || || |||||||| | ||||| || || ||||| ||||| || || || ||
Sbjct 141126 ACGTTGGACGTGTACGGTTCGAAGGACTCGTTGTTACCCAAGATTTGTGCCGTCGAAGCG 141185
Query 62484 GTCGGCATAGGTGCCACCAATAAACTATTTCTAAGACCGTATGTTCTGATTTTATCTTTT 62543
|| ||||| ||||||| || | ||| | | |||| || ||||| || ||
Sbjct 141186 GTAGGCATCGGTGCCAACAGCAGCGAATTGCGGATGCCGTGCTTTGCAATTTTTTCCTTC 141245
Query 62544 AGATGTTCCCAATTCCAAAGATCCGACGGTACAACANNNNNNNNNNNATATTGTAGAATA 62603
| | ||||||||||||||||||||||| | || || || ||
Sbjct 141246 AACTCGGCCCAATTCCAAAGATCCGACGGTTCCTTCTTCCACATTTCGTACTGCAGGATG 141305
Query 62604 CCGTTACTGGC-GTACGATCCTACATATGTATCATATGGTCCTTCCTTCTCAGCTAGTTT 62662
|| || || | | || ||| | || || || || ||||| || | || | |
Sbjct 141306 CCTTTGCTTACCGGACTC-CCTTCGTACGTTTCGTACGGTCCGTCGCGGGCGGCCAACTC 141364
Query 62663 ACAACTCGCCTCTAATGCACCGTAATAAATGGTTTCAAAGATCTTCTTATTTAGATCTTG 62722
||| ||||| || ||||| ||||| || || ||||| || || | | || || | |||
Sbjct 141365 ACAGCTCGCTTCCAATGCTCCGTAGTAGATTGTTTCGAAAATTTGTTGGTTCAGCTTTTG 141424
Query 62723 TGCTTCCGGGCTATCAAATGGATAATTTAAGAGAATAAACGCGTCCGCTAATCCTTGAAC 62782
|| ||| ||| || | ||||| | | ||| ||||| || || | || |||||
Sbjct 141425 GGCCTCCTCGCTTTCGTACGGATAGCGCATCAAAATGAACGCATCGGCCATGCCCTGAAC 141484
Query 62783 ACCAATACCGATAGGTCTATGTCTCTTATTAGAGATTTCAGCTTCTGGAATAGGATAATA 62842
||| |||||||| || || || | | | || ||| | || || || | ||||| ||
Sbjct 141485 ACCGATACCGATCGGCCTGTGCCGCATGTTGGAGCGCTTCGCCTCCGGTACTGGATAGTA 141544
Query 62843 ATTAATATCTATAATTTTATTGAGATTTCT-GACAATTACTTTGACCACATCCTTCAGTT 62901
|| ||||| |||||||| || ||||| | | ||| ||| | | ||||||||||| |
Sbjct 141545 GTTTATATCGATAATTTTGTTCAGATTGCGCGTCAAAATCTTCG-CGACATCCTTCAGCT 141603
Query 62902 TGAGAAAATCAAA----TCGCCCATCTATTACAAACATGTTCAATGCAACAGATGCCAGA 62957
|| ||| || | | | || | | ||||||||||||| || | || |||| |
Sbjct 141604 TGGCAAAGTCGTACGTTTTGTCCGGTT-TCACAAACATGTTCAGCGCGATCGAGGCCAAA 141662
Query 62958 TTACACACGGCTACCTCATTAGCATC--CGCATATTGTATTATCTCAGTGCAAAGATTAC 63015
|| ||||| |||| |||| | || || || | | |||||| || || |||||
Sbjct 141663 TTGCACACCGCTATTTCATC--CTTCGACGAGTACTCCACTATCTCGGTACACAGATTGG 141720
Query 63016 TACACTTGATAGTTCCTAAATTTTGTTGATTACTCTTTTTGTTACACGCATCCTTATAAA 63075
|||||| || || || | || || ||||| ||||| ||| ||||||||||| || |
Sbjct 141721 AACACTTTATGGTGCCGATGTTCTGCTGATTGCTCTTGCGGTTGCACGCATCCTTGTACA 141780
Query 63076 GAATGAATGGAGTACCAGTTTCAATCTGAGATTCTATAATCGCTTTCCAGACGACTCGAG 63135
| ||| | ||| || ||||| | ||| ||||| || || || ||| | | | | |
Sbjct 141781 GCATGTACGGAACGCCCGTTTCCACCTGCGATTCGATGATGGCAAACCATAGGTCCTGTG 141840
Query 63136 CCTTTATTATAGATTTGTATCTCCTTTCTCTTTCGTATAGAGTATACAATCGTTCGAACT 63195
|||| | | | ||| | || ||||| ||| |||| |||||||
Sbjct 141841 CCTTCACCTGGCGTATAAATCGACCCTCCTGCTCGTACCCAGTGTACAGCTTCTCGAACT 141900
Query 63196 CGTCTCCCCAAACATTGTCCAATCTAGGACATTCATCCGGACACATCAACGACCACTCTC 63255
| || |||||| | |||||| || || || | || ||||||| |||| |
Sbjct 141901 CTTCGCCCCAAGTGTCAGCCAATCCGGGGCAGTCGTGTGGGCACATCAGGCTCCACATTT 141960
Query 63256 CGTCATCCTTCACTCGTTTCATAAAGAGATCAGGAATCCAAAGAGCTATAAATAGATCTC 63315
||| ||| ||| || | ||| || ||||| || ||||| || || || | || |
Sbjct 141961 CGTTCGCCTCCACACGCTGCATGAACAGATCCGGGATCCACAGGGCGTAGAACATGTCGC 142020
Query 63316 TTGTTCTATGTTCCTCGTTTCCTGTATTCTTTTTAAGATCGAGGAACGCCATAATATCAG 63375
| | ||||| || || || || || || ||||| || ||| | | |||||
Sbjct 142021 GGGCACGCACCTCCTCCTTGCCGGTGTTTTTCTTCAGATCCAGAAACTCGAATATATCCC 142080
Query 63376 AATGCCACGGTTCCAAGTATATGGCCATAACTCCAGGCCGTTTGTTTCCTCCCTGATCTA 63435
||||| ||||| | ||| ||||| | | || ||||| ||||| || |||||||| |
Sbjct 142081 CGTGCCATGGTTCGAGGTAGATGGCAAAGGCGCCGGGCCGCTTGTTGCCACCCTGATCCA 142140
Query 63436 TGTATCTAGCGGTGTTATTATAAACTCTCAACATTGGAATAATACCGTTTGATATACCAT 63495
||| | || ||||| || ||||| | || ||| || | | ||||| || || ||||
Sbjct 142141 CGTACCGGGCCGTGTTGTTGTAAACGCGCAGCATCGGCACCAACCCGTTCGAAATCCCAT 142200
Query 63496 TGGTACCGGAGATATAGCCTCCACTGGCACGAAT--ATTACTAATTGATAGACCTATTCC 63553
| || |||||||| || ||| |||| ||||| | | | || | | || || ||
Sbjct 142201 TCGTGCCGGAGATGTACGTTCCTTTGGCGCGAATGCAGTGCACGTTCA--GCCCGATACC 142258
Query 63554 CCCTGCCATTTTAGAGATTAATGCGCATCGTTTTAACGTGTCATAGATGCCTTCTATGCT 63613
|| ||| ||| || || | ||| || | |||| ||| || || || || || || ||
Sbjct 142259 GCCGGCCGATTTGGAAATCAGTGCACACTGCTTTAGCGTATCGTAAATACCCTCAATACT 142318
Query 63614 ATCATCGATCATGTTAAGTAGAAAACAGCTAGACATTTGGTGACGA---GTAGTTCCCGC 63670
|| || |||| |||| ||||| || || | || |||| |||| ||||
Sbjct 142319 GTCGTCCGACATGGTAAGCAGAAAGCAAGACGAAAGCTGCGGACGCTGCGTAGCGGCCGC 142378
Query 63671 ATTAAATAAGGTAGGAGAAGCGTGCGTAAACCATTTTTCAGAAAGTAGATTGTACGTCTC 63730
| || | ||| || || || || ||||| | || ||||| ||||||||||||||
Sbjct 142379 A---AACATGGTCGGTGAGGCATGGGTAAAGTAGCGCTCGGAAAGCAGATTGTACGTCTC 142435
Query 63731 AATAGCTGAGTCTATATC-CCATTGATGAATTCCTACTGCGACACGCATTAACATGTGCT 63789
|| || | || || || || | ||||| || | || || ||||| | |||||| |
Sbjct 142436 GATGGCAGCATCAATGTCTTCACCG-TGAATACCGATGGCAACGCGCATCAGCATGTGTT 142494
Query 63790 GAGGTCTTTCAACAATTTTGTTGTTTATTTTCAACAAGTAGGATTTTTCCAAAGTTTTAA 63849
| |||| || ||||| || || || |||| ||| ||||| |||| ||||| |
Sbjct 142495 GCGGTCGCTCCACAATCTTACCCTTGATCTTCAGCAAATAGGAACGCTCCAGTGTTTTGA 142554
Query 63850 AACCAAAATAGTTGTATGAAAAGTCTCGTTCGTAAATAATAACCGAATTGAGC 63902
| || ||||||||||| || || || |||||||| || |||| || |||
Sbjct 142555 AGCCGAAATAGTTGTACCCGAAATCACGGTCGTAAATGATGGCCGAGTTCAGC 142607
>seq24
Length=2206587
Score = 123 bits (136), Expect = 3e-23
Identities = 183/258 (71%), Gaps = 5/258 (2%)
Strand=Plus/Plus
Query 33570 TTAAACATCAAACATGCGAAATCGCAGTGCAGACCCTCGTCTCTACTAATTAATTCGTTA 33629
|| ||||||| || |||||||| || |||| |||||||| || ||| | |||||
Sbjct 1947559 TTGAACATCAGGCAGGCGAAATCACAATGCAATCCCTCGTCCCTCGAAATCAGCTCGTTC 1947618
Query 33630 GAAAACGTGAGTCCGGGCATTAGGCCACGCTTTTTAAGCCAAAATATGGAAGCGAATGAT 33689
|| || || || || ||||| ||||||||||| || ||||| || ||||| || ||
Sbjct 1947619 GAGAAGGTAAGACCCGGCATAAGGCCACGCTTCTTGAGCCAGAAGATGGACGCAAAGCTG 1947678
Query 33690 CCGGAAAAGAAGATTCCTTCTACTGCAGCAAAGGCAATAAGTCTCTCTCCA----TAACC 33745
||| |||||||| || || || |||||||| || | | | ||| ||| || ||
Sbjct 1947679 CCGCTGAAGAAGATACCCTCGACGGCAGCAAATGCGACCACACGCTCGCCAAAGTTAGCC 1947738
Query 33746 GGCGCTGTCATGTATCCACTTTTGAGCCCAATCGGCCTTCTTTTTTACACAAGGCATCGT 33805
| || | ||||| || | ||||| || |||||||| || || || || | |||
Sbjct 1947739 TTCTTGCTCGAG-ATCCAGTTAAGCGCCCAGTCTGCCTTCTTCTTCACGCACGGTAGCGT 1947797
Query 33806 TTCTATGGCATTAAAGAG 33823
||| ||||||||||| ||
Sbjct 1947798 TTCGATGGCATTAAACAG 1947815
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 629633606660880
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |