Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Anopheles_20stephensi_20[genbank_20GCA_5F000300775.2_202013-07-19]
23,371 sequences; 221,324,304 total letters
Query= NC_003389.1
Length=146454
Score E
Sequences producing significant alignments: (Bits) Value
seq59 158 1e-33
seq24 107 2e-18
>seq59
Length=1145648
Score = 158 bits (174), Expect = 1e-33
Identities = 521/807 (65%), Gaps = 5/807 (1%)
Strand=Plus/Plus
Query 36817 GCCGATTTTGTTCTCATATAATACATTCCAGTTTTTAGCCCCAATCTCCATCCGTAAAAA 36876
|||| |||||||| || ||| ||||| || ||||| || |||| | |||| ||||||||
Sbjct 140766 GCCGGTTTTGTTCGCAGATAGTACATGCCCGTTTTCAGTCCCATTTTCCAGCCGTAAAAG 140825
Query 36877 TGCATACTGGTCAGTTTTGCGTATGTAGGATTATCTATATATATTGTCATTGATTGACTT 36936
|| || ||||| || | || | || | | | | ||| | | |||||
Sbjct 140826 TGGATCGATGTCAGCTTGCCATAGTTCGGTTCGGCCACGTGTATGTTGAACGATTGCGAC 140885
Query 36937 TGATCTATAAACGCACCTCTGTCGGCTGCCATTTCTAAAATACATTTTTGA-GATATCTC 36995
||||| ||||||||||| | ||| || ||||| | ||| || |||| || |||||
Sbjct 140886 TGATCGATAAACGCACCCCGGTCAGCAGCCATCT-TAATGCACGTTTTAACCGAAATCTC 140944
Query 36996 CCAAACCGTTTTATATATTTGTTTTATATTATCTGGTA---AATCTAAATGTTGAATAGA 37052
||| |||||||| || | | ||| | | |||| | || | |||||| ||
Sbjct 140945 CCACACCGTTTTGTACAGATCGCGTATTTCCTTCGGTATCGATTCGATGCTTTGAATCGA 141004
Query 37053 ACCATTATGTAACACAATTGTATTCTTTATGTCATTATTCCACATATTTCTACTTATTAG 37112
|| || | ||| |||| ||||| ||||| || ||||| | | | | |
Sbjct 141005 TCCGTTGTTGGACAGAATTTGGTTCTTCATGTCTAGATCCCACAGACCCATCGCTGTCAA 141064
Query 37113 TTCTCTCAATAGGTGTGGATTTACAACCTGAAAATCTCCAGATAATACTCTTCTTGTATA 37172
||| || || || | || || |||||||| || || || | ||| | | | ||
Sbjct 141065 ATCTTGCAGCAGATGGTGGTTCACCACCTGAAACTCGCCGGAAAGTACACGCCGATTGTA 141124
Query 37173 TATATTGCTAGTATATGGTTCAATGGACTCATTATTACTTAATATTTGAGATGTAGATGC 37232
| ||| || || ||||| | |||||| || |||| || ||||| | || || ||
Sbjct 141125 AACGTTGGACGTGTACGGTTCGAAGGACTCGTTGTTACCCAAGATTTGTGCCGTCGAAGC 141184
Query 37233 AGTAGGCATTGGTGCTATTAGAAGGCTATTTCTCAATCCATGTGTATTAATTCTCTTTTT 37292
|||||||| ||||| | || || ||| | | || || | |||| | | ||
Sbjct 141185 GGTAGGCATCGGTGCCAACAGCAGCGAATTGCGGATGCCGTGCTTTGCAATTTTTTCCTT 141244
Query 37293 TAGTTCATTCCAATCCCATAAATCTGTTGGGTTCTTTAACCACATATCATATTGTAGAAT 37352
| || ||||| ||| | ||| | || | ||| |||||| || || || || ||
Sbjct 141245 CAACTCGGCCCAATTCCAAAGATCCGACGGTTCCTTCTTCCACATTTCGTACTGCAGGAT 141304
Query 37353 ACCTTTACTCGCTGGAGAATCGTTATATGTCTCATAAGGTCCGTAAATTTTAGCTAGTTC 37412
||||| || | ||| | | || || || || ||||||| || | ||
Sbjct 141305 GCCTTTGCTTACCGGACTCCCTTCGTACGTTTCGTACGGTCCGTCGCGGGCGGCCAACTC 141364
Query 37413 GCAACTAGATTCTAGTGCGGCATAATATATTGTTTCGAAAATTTGTATATTTAATATTTT 37472
|| || | ||| | ||| | || || |||||||||||||||||| || | |||
Sbjct 141365 ACAGCTCGCTTCCAATGCTCCGTAGTAGATTGTTTCGAAAATTTGTTGGTTCAGCTTTTG 141424
Query 37473 TGCTTCTTCGCTATCGAATGCATAGCCCAATAATATAAACACATCAGCCAAACCCTGAAC 37532
|| || ||||| ||| | | ||||| || || || ||| |||| |||| ||||||||
Sbjct 141425 GGCCTCCTCGCTTTCGTACGGATAGCGCATCAAAATGAACGCATCGGCCATGCCCTGAAC 141484
Query 37533 ACCGATACCTATGGGTCTATGTTTCTTATTAGATCTAGACGATTCTATCACTGGATAATA 37592
||||||||| || || || || | | || || | || || |||||||| ||
Sbjct 141485 ACCGATACCGATCGGCCTGTGCCGCATGTTGGAGCGCTTCGCCTCCGGTACTGGATAGTA 141544
Query 37593 ATTGATATCTATTATTTTATTTAGATT 37619
|| ||||| || ||||| || |||||
Sbjct 141545 GTTTATATCGATAATTTTGTTCAGATT 141571
>seq24
Length=2206587
Score = 107 bits (118), Expect = 2e-18
Identities = 289/440 (66%), Gaps = 3/440 (1%)
Strand=Plus/Plus
Query 11432 ACTTTTTCACAACCTAACTCTGTTAATAATCTATCTGCGACGAATTCTATATACTGAGAC 11491
|| || ||||| || ||||| | || | ||| || || || || || ||||| |||
Sbjct 1947373 ACCTTGTCACAGCCCAACTCCAGCAGCAAACGATCCGCCACAAACTCAATGTACTGCGAC 1947432
Query 11492 ATTAAACAACAATTCATACCTATAAGATCCACCGGAATAGCAACTGTCAAAAACTCCTTT 11551
|| | | ||||||||| || | | ||| ||||| | || |||||||| || |
Sbjct 1947433 ATCAGATCACAATTCATGCCGAGCATATCGACCGGCAGGGCTTTCGTCAAAAATTCTTGC 1947492
Query 11552 TCTATATTAACCGCATCAATGATTATCGACGTTATAACTTCCTTAGATGGTGGATGTAAT 11611
|| || |||||||| ||| ||| ||| | ||||| || || || |
Sbjct 1947493 TCGATCACTACCGCATCGCGGATGATCTCCGTCACGCGCTCCTTCGAAGGCTTCTGCACC 1947552
Query 11612 AAATGTTTAAACATTAAACACGCAAAATCACAATGTAAACCTTCGTCTCTACTTATTAGT 11671
| || || ||||| | || || ||||||||||| || || ||||| || || ||
Sbjct 1947553 AGATACTTGAACATCAGGCAGGCGAAATCACAATGCAATCCCTCGTCCCTCGAAATCAGC 1947612
Query 11672 TCATTAGAAAATGTTAATCCGGGCATCAATCCTCGtttttttATCCAAAATATAGCAGCA 11731
|| || || || || | || ||||| | || || || || | ||| || || | |||
Sbjct 1947613 TCGTTCGAGAAGGTAAGACCCGGCATAAGGCCACGCTTCTTGAGCCAGAAGATGGACGCA 1947672
Query 11732 AATGAACCAGAAAAGAATATTCCCTCCACAGCTGCAAATGCTACTACTCTTTCTCCATA- 11790
|| || ||||| || ||||| || || |||||||| || || | || ||| |
Sbjct 1947673 AAGCTGCCGCTGAAGAAGATACCCTCGACGGCAGCAAATGCGACCACACGCTCGCCAAAG 1947732
Query 11791 -TA-CCTTGTTGCTAGATATCCATTTTCTGGCCCAATCAGCTTTCTTTTTTACGCATTCC 11848
|| |||| ||||| || ||||| || ||||| || || ||||| || |||||
Sbjct 1947733 TTAGCCTTCTTGCTCGAGATCCAGTTAAGCGCCCAGTCTGCCTTCTTCTTCACGCACGGT 1947792
Query 11849 ATTGTTTCTATAGCGTTAAA 11868
| ||||| || || |||||
Sbjct 1947793 AGCGTTTCGATGGCATTAAA 1947812
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 468387926336240
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |