Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Anopheles_20stephensi_20[genbank_20GCA_5F000300775.2_202013-07-19] 23,371 sequences; 221,324,304 total letters Query= NC_003389.1 Length=146454 Score E Sequences producing significant alignments: (Bits) Value seq59 158 1e-33 seq24 107 2e-18 >seq59 Length=1145648 Score = 158 bits (174), Expect = 1e-33 Identities = 521/807 (65%), Gaps = 5/807 (1%) Strand=Plus/Plus Query 36817 GCCGATTTTGTTCTCATATAATACATTCCAGTTTTTAGCCCCAATCTCCATCCGTAAAAA 36876 |||| |||||||| || ||| ||||| || ||||| || |||| | |||| |||||||| Sbjct 140766 GCCGGTTTTGTTCGCAGATAGTACATGCCCGTTTTCAGTCCCATTTTCCAGCCGTAAAAG 140825 Query 36877 TGCATACTGGTCAGTTTTGCGTATGTAGGATTATCTATATATATTGTCATTGATTGACTT 36936 || || ||||| || | || | || | | | | ||| | | ||||| Sbjct 140826 TGGATCGATGTCAGCTTGCCATAGTTCGGTTCGGCCACGTGTATGTTGAACGATTGCGAC 140885 Query 36937 TGATCTATAAACGCACCTCTGTCGGCTGCCATTTCTAAAATACATTTTTGA-GATATCTC 36995 ||||| ||||||||||| | ||| || ||||| | ||| || |||| || ||||| Sbjct 140886 TGATCGATAAACGCACCCCGGTCAGCAGCCATCT-TAATGCACGTTTTAACCGAAATCTC 140944 Query 36996 CCAAACCGTTTTATATATTTGTTTTATATTATCTGGTA---AATCTAAATGTTGAATAGA 37052 ||| |||||||| || | | ||| | | |||| | || | |||||| || Sbjct 140945 CCACACCGTTTTGTACAGATCGCGTATTTCCTTCGGTATCGATTCGATGCTTTGAATCGA 141004 Query 37053 ACCATTATGTAACACAATTGTATTCTTTATGTCATTATTCCACATATTTCTACTTATTAG 37112 || || | ||| |||| ||||| ||||| || ||||| | | | | | Sbjct 141005 TCCGTTGTTGGACAGAATTTGGTTCTTCATGTCTAGATCCCACAGACCCATCGCTGTCAA 141064 Query 37113 TTCTCTCAATAGGTGTGGATTTACAACCTGAAAATCTCCAGATAATACTCTTCTTGTATA 37172 ||| || || || | || || |||||||| || || || | ||| | | | || Sbjct 141065 ATCTTGCAGCAGATGGTGGTTCACCACCTGAAACTCGCCGGAAAGTACACGCCGATTGTA 141124 Query 37173 TATATTGCTAGTATATGGTTCAATGGACTCATTATTACTTAATATTTGAGATGTAGATGC 37232 | ||| || || ||||| | |||||| || |||| || ||||| | || || || Sbjct 141125 AACGTTGGACGTGTACGGTTCGAAGGACTCGTTGTTACCCAAGATTTGTGCCGTCGAAGC 141184 Query 37233 AGTAGGCATTGGTGCTATTAGAAGGCTATTTCTCAATCCATGTGTATTAATTCTCTTTTT 37292 |||||||| ||||| | || || ||| | | || || | |||| | | || Sbjct 141185 GGTAGGCATCGGTGCCAACAGCAGCGAATTGCGGATGCCGTGCTTTGCAATTTTTTCCTT 141244 Query 37293 TAGTTCATTCCAATCCCATAAATCTGTTGGGTTCTTTAACCACATATCATATTGTAGAAT 37352 | || ||||| ||| | ||| | || | ||| |||||| || || || || || Sbjct 141245 CAACTCGGCCCAATTCCAAAGATCCGACGGTTCCTTCTTCCACATTTCGTACTGCAGGAT 141304 Query 37353 ACCTTTACTCGCTGGAGAATCGTTATATGTCTCATAAGGTCCGTAAATTTTAGCTAGTTC 37412 ||||| || | ||| | | || || || || ||||||| || | || Sbjct 141305 GCCTTTGCTTACCGGACTCCCTTCGTACGTTTCGTACGGTCCGTCGCGGGCGGCCAACTC 141364 Query 37413 GCAACTAGATTCTAGTGCGGCATAATATATTGTTTCGAAAATTTGTATATTTAATATTTT 37472 || || | ||| | ||| | || || |||||||||||||||||| || | ||| Sbjct 141365 ACAGCTCGCTTCCAATGCTCCGTAGTAGATTGTTTCGAAAATTTGTTGGTTCAGCTTTTG 141424 Query 37473 TGCTTCTTCGCTATCGAATGCATAGCCCAATAATATAAACACATCAGCCAAACCCTGAAC 37532 || || ||||| ||| | | ||||| || || || ||| |||| |||| |||||||| Sbjct 141425 GGCCTCCTCGCTTTCGTACGGATAGCGCATCAAAATGAACGCATCGGCCATGCCCTGAAC 141484 Query 37533 ACCGATACCTATGGGTCTATGTTTCTTATTAGATCTAGACGATTCTATCACTGGATAATA 37592 ||||||||| || || || || | | || || | || || |||||||| || Sbjct 141485 ACCGATACCGATCGGCCTGTGCCGCATGTTGGAGCGCTTCGCCTCCGGTACTGGATAGTA 141544 Query 37593 ATTGATATCTATTATTTTATTTAGATT 37619 || ||||| || ||||| || ||||| Sbjct 141545 GTTTATATCGATAATTTTGTTCAGATT 141571 >seq24 Length=2206587 Score = 107 bits (118), Expect = 2e-18 Identities = 289/440 (66%), Gaps = 3/440 (1%) Strand=Plus/Plus Query 11432 ACTTTTTCACAACCTAACTCTGTTAATAATCTATCTGCGACGAATTCTATATACTGAGAC 11491 || || ||||| || ||||| | || | ||| || || || || || ||||| ||| Sbjct 1947373 ACCTTGTCACAGCCCAACTCCAGCAGCAAACGATCCGCCACAAACTCAATGTACTGCGAC 1947432 Query 11492 ATTAAACAACAATTCATACCTATAAGATCCACCGGAATAGCAACTGTCAAAAACTCCTTT 11551 || | | ||||||||| || | | ||| ||||| | || |||||||| || | Sbjct 1947433 ATCAGATCACAATTCATGCCGAGCATATCGACCGGCAGGGCTTTCGTCAAAAATTCTTGC 1947492 Query 11552 TCTATATTAACCGCATCAATGATTATCGACGTTATAACTTCCTTAGATGGTGGATGTAAT 11611 || || |||||||| ||| ||| ||| | ||||| || || || | Sbjct 1947493 TCGATCACTACCGCATCGCGGATGATCTCCGTCACGCGCTCCTTCGAAGGCTTCTGCACC 1947552 Query 11612 AAATGTTTAAACATTAAACACGCAAAATCACAATGTAAACCTTCGTCTCTACTTATTAGT 11671 | || || ||||| | || || ||||||||||| || || ||||| || || || Sbjct 1947553 AGATACTTGAACATCAGGCAGGCGAAATCACAATGCAATCCCTCGTCCCTCGAAATCAGC 1947612 Query 11672 TCATTAGAAAATGTTAATCCGGGCATCAATCCTCGtttttttATCCAAAATATAGCAGCA 11731 || || || || || | || ||||| | || || || || | ||| || || | ||| Sbjct 1947613 TCGTTCGAGAAGGTAAGACCCGGCATAAGGCCACGCTTCTTGAGCCAGAAGATGGACGCA 1947672 Query 11732 AATGAACCAGAAAAGAATATTCCCTCCACAGCTGCAAATGCTACTACTCTTTCTCCATA- 11790 || || ||||| || ||||| || || |||||||| || || | || ||| | Sbjct 1947673 AAGCTGCCGCTGAAGAAGATACCCTCGACGGCAGCAAATGCGACCACACGCTCGCCAAAG 1947732 Query 11791 -TA-CCTTGTTGCTAGATATCCATTTTCTGGCCCAATCAGCTTTCTTTTTTACGCATTCC 11848 || |||| ||||| || ||||| || ||||| || || ||||| || ||||| Sbjct 1947733 TTAGCCTTCTTGCTCGAGATCCAGTTAAGCGCCCAGTCTGCCTTCTTCTTCACGCACGGT 1947792 Query 11849 ATTGTTTCTATAGCGTTAAA 11868 | ||||| || || ||||| Sbjct 1947793 AGCGTTTCGATGGCATTAAA 1947812 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 468387926336240