Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Anopheles_20stephensi_20[genbank_20GCA_5F000300775.2_202013-07-19] 23,371 sequences; 221,324,304 total letters Query= NC_003391.1 Length=205719 Score E Sequences producing significant alignments: (Bits) Value seq59 421 9e-113 seq24 100 4e-16 >seq59 Length=1145648 Score = 421 bits (466), Expect = 9e-113 Identities = 1213/1852 (65%), Gaps = 28/1852 (2%) Strand=Plus/Plus Query 64860 GCGGGTTTCGTACGTAGATAGTACATTCCCGTTTTTAGACCGAGACTCCATCCGTAAAAA 64919 || ||||| || || ||||||||||| |||||||| || || | |||| |||||||| Sbjct 140766 GCCGGTTTTGTTCGCAGATAGTACATGCCCGTTTTCAGTCCCATTTTCCAGCCGTAAAAG 140825 Query 64920 TGCATACTCGTTAGTTTGGAATAACTCGGATCTGCTATATGGATATTCATAGATTGACTT 64979 || || || || ||| ||| |||| || || | || || || | ||||| Sbjct 140826 TGGATCGATGTCAGCTTGCCATAGTTCGGTTCGGCCACGTGTATGTTGAACGATTGCGAC 140885 Query 64980 TGATCGATGAAGGCTCCCCTGTCTGCAGCCATTTTTATGATCGTCTTTTGTGGAATTTCC 65039 |||||||| || || |||| ||| |||||||| || ||| ||| || | ||| ||| Sbjct 140886 TGATCGATAAACGCACCCCGGTCAGCAGCCATCTTAATGCACGTTTTAACCGAAATCTCC 140945 Query 65040 CAAATAGTTTTATAAAC-TCGCTTAATATCTTCTGGAAGGTTTGTATTCT--GAATGGAT 65096 || | ||||| || | |||| || | |||| | | | || || || |||| ||| Sbjct 140946 CACACCGTTTTGTACAGATCGCGTATTTCCTTCGGTATCGATTCGATGCTTTGAATCGAT 141005 Query 65097 CCACCATCTGCCATAATCCTATTCTTGATCTCATCATTCCATAATTTTCTCTCGGTTAAA 65156 || | | || ||| ||||| || || || ||| | || | || ||| Sbjct 141006 CCGTTGTTGGACAGAATTTGGTTCTTCATGTCTAGATCCCACAGACCCATCGCTGTCAAA 141065 Query 65157 ACTCTAAGGAGATGCGGATTAACTACTTGAAATTCTCCAGACAATACTCTCCGAGTGTAA 65216 || || ||||| | || || || ||||| || || || | ||| | |||| ||||| Sbjct 141066 TCTTGCAGCAGATGGTGGTTCACCACCTGAAACTCGCCGGAAAGTACACGCCGATTGTAA 141125 Query 65217 ATATTACTGGTATACGGTTCCACAGACTCATTATTTCCCAAAATTTGAGCAGTTGATGCA 65276 | || || |||||||| | ||||| || || ||||| ||||| || || || || Sbjct 141126 ACGTTGGACGTGTACGGTTCGAAGGACTCGTTGTTACCCAAGATTTGTGCCGTCGAAGCG 141185 Query 65277 GTCGGCATAGGTGCCACCAATAAACTATTTCTAAGACCGTATGTTCTGATTTTATCTTTT 65336 || ||||| ||||||| || | ||| | | |||| || ||||| || || Sbjct 141186 GTAGGCATCGGTGCCAACAGCAGCGAATTGCGGATGCCGTGCTTTGCAATTTTTTCCTTC 141245 Query 65337 AGAGGTTCCCAATTCCAAAGATCCGACGGTACAACNNNNNNNNNNNNNNNTTGTAGAATA 65396 | ||||||||||||||||||||||| | || || || Sbjct 141246 AACTCGGCCCAATTCCAAAGATCCGACGGTTCCTTCTTCCACATTTCGTACTGCAGGATG 141305 Query 65397 CCGTTACTGGC-GTACGATCCTACATATGTATCGTATGGTCCTTCCTTCTCAGCTAGTTC 65455 || || || | | || ||| | || || ||||| ||||| || | || | || Sbjct 141306 CCTTTGCTTACCGGACTC-CCTTCGTACGTTTCGTACGGTCCGTCGCGGGCGGCCAACTC 141364 Query 65456 ACAACTCGCCTCTAATGCACCGTAATAAATGGTTTCGAAGATCTTCTTATTTAGATCTTG 65515 ||| ||||| || ||||| ||||| || || |||||||| || | | || || | ||| Sbjct 141365 ACAGCTCGCTTCCAATGCTCCGTAGTAGATTGTTTCGAAAATTTGTTGGTTCAGCTTTTG 141424 Query 65516 TGCTTCCAGGCTATCAAATGGATAATTTAAGAGAATAAACGCGTCTGCTAATCCTTGAAC 65575 || ||| ||| || | ||||| | | ||| ||||| || || | || ||||| Sbjct 141425 GGCCTCCTCGCTTTCGTACGGATAGCGCATCAAAATGAACGCATCGGCCATGCCCTGAAC 141484 Query 65576 ACCAATACCGATAGGTCTATGTCTCTTATTAGAGATTTCAGCTTCTGGAATAGGATAATA 65635 ||| |||||||| || || || | | | || ||| | || || || | ||||| || Sbjct 141485 ACCGATACCGATCGGCCTGTGCCGCATGTTGGAGCGCTTCGCCTCCGGTACTGGATAGTA 141544 Query 65636 ATTAATATCTATAATTTTATTGAGATTTCT-GACAATTACTTTGACCACATCCTTCAGTT 65694 || ||||| |||||||| || ||||| | | ||| ||| | | ||||||||||| | Sbjct 141545 GTTTATATCGATAATTTTGTTCAGATTGCGCGTCAAAATCTTCG-CGACATCCTTCAGCT 141603 Query 65695 TGAGAAAATCAAATCGCTCATC---TATTACAAACATGTTCAATGCAACAGATGCCAGAT 65751 || ||| || | | || | | ||||||||||||| || | || |||| || Sbjct 141604 TGGCAAAGTCGTACGTTTTGTCCGGTTTCACAAACATGTTCAGCGCGATCGAGGCCAAAT 141663 Query 65752 TACAAACGGCTACCTCATTAGCATC--CGCATATTGTATTATCTCAGTGCAAAGATTACT 65809 | || || |||| |||| | || || || | | |||||| || || ||||| Sbjct 141664 TGCACACCGCTATTTCATC--CTTCGACGAGTACTCCACTATCTCGGTACACAGATTGGA 141721 Query 65810 ACACTTGATGGTTCCTAAATTTTGTTGATTACTCTTTTTGTTACACGCATCCTTATAAAG 65869 |||||| ||||| || | || || ||||| ||||| ||| ||||||||||| || || Sbjct 141722 ACACTTTATGGTGCCGATGTTCTGCTGATTGCTCTTGCGGTTGCACGCATCCTTGTACAG 141781 Query 65870 AATGAATGGAGTACCAGTTTCAATCTGAGATTCTATAATCGCTTTCCAGACGACTCGAGC 65929 ||| | ||| || ||||| | ||| ||||| || || || ||| | | | | || Sbjct 141782 CATGTACGGAACGCCCGTTTCCACCTGCGATTCGATGATGGCAAACCATAGGTCCTGTGC 141841 Query 65930 CTTTATTATAGATTTGTATCTCTTTTCTCTT--TCGTAT--AGTGTATACAATCGTTCGA 65985 ||| | | | || || ||| | ||||| |||||| | || |||| Sbjct 141842 CTTCACCT--GGCGTATAAATCGACCCTCCTGCTCGTACCCAGTGTACAGCTTC--TCGA 141897 Query 65986 ACTCGTCTCCCCAAACATTGTCCAATCCAGGACATTCATCCGGACACATCAACGACCACT 66045 |||| || |||||| | ||||||| || || || | || ||||||| |||| Sbjct 141898 ACTCTTCGCCCCAAGTGTCAGCCAATCCGGGGCAGTCGTGTGGGCACATCAGGCTCCACA 141957 Query 66046 CTCCGTCATCCTTCACTCGTTTCATAAAGAGATCAGGAATCCAAAGAGCTATAAATAAAT 66105 | ||| ||| ||| || | ||| || ||||| || ||||| || || || | | Sbjct 141958 TTTCGTTCGCCTCCACACGCTGCATGAACAGATCCGGGATCCACAGGGCGTAGAACATGT 142017 Query 66106 CTCTGGTTCTATGTTCCTCGTTTCCTGTATTCTTTTTAAGATCGAGGAACGCCATAATAT 66165 | | || | ||||| || || || || || || ||||| || ||| | | |||| Sbjct 142018 CGCGGGCACGCACCTCCTCCTTGCCGGTGTTTTTCTTCAGATCCAGAAACTCGAATATAT 142077 Query 66166 CATAATGCCACGGTTCCAAGTATATGGCCATAACTCCAGGCCGTTTGTTTCCTCCCTGAT 66225 | ||||| ||||| | ||| ||||| | | || ||||| ||||| || ||||||| Sbjct 142078 CCCCGTGCCATGGTTCGAGGTAGATGGCAAAGGCGCCGGGCCGCTTGTTGCCACCCTGAT 142137 Query 66226 CTATGTATCTAGCGGTGTTATTATAAACTCTCAACATTGGAATAATACCATTGGATGTAC 66285 | | ||| | || ||||| || ||||| | || ||| || | | || || || | | Sbjct 142138 CCACGTACCGGGCCGTGTTGTTGTAAACGCGCAGCATCGGCACCAACCCGTTCGAAATCC 142197 Query 66286 CATTGGTCCCGGAGATATAGCTTCCACTTGCACGAAT--ATTACTAATTGATAGACCTAT 66343 |||| || |||||||| || |||| | || ||||| | | | || | | || || Sbjct 142198 CATTCGTGCCGGAGATGTACGTTCCTTTGGCGCGAATGCAGTGCACGTTCA--GCCCGAT 142255 Query 66344 TCCCCCTGCCATTTTAGAGATTAATGCGCATCGTTTTAACGTATCATAGATGCCCTCTAT 66403 || || ||| ||| || || | ||| || | |||| |||||| || || ||||| || Sbjct 142256 ACCGCCGGCCGATTTGGAAATCAGTGCACACTGCTTTAGCGTATCGTAAATACCCTCAAT 142315 Query 66404 ACTATCATCCATCATGTTAAGTAGAAAACAGCTAGACATTTGGTGACGACTAGTTCCCGC 66463 ||| || ||| |||| |||| ||||| || || | || |||| || | || Sbjct 142316 ACTGTCGTCCGACATGGTAAGCAGAAAGCAAGACGAAAGCTGCGGACGCTGCGTAGCGGC 142375 Query 66464 ATTAAATAAGGTAGGAGAAGCGTGCGTAAACCATTTTTCAGAAAGTAGATTGTACGTCTC 66523 ||| | ||| || || || || ||||| | || ||||| |||||||||||||| Sbjct 142376 CGCAAACATGGTCGGTGAGGCATGGGTAAAGTAGCGCTCGGAAAGCAGATTGTACGTCTC 142435 Query 66524 AATAGCTGAGTCTATATC-CCATTGATGAATTCCTACTGCGACACGCATTAACATGTGCT 66582 || || | || || || || | ||||| || | || || ||||| | |||||| | Sbjct 142436 GATGGCAGCATCAATGTCTTCACCG-TGAATACCGATGGCAACGCGCATCAGCATGTGTT 142494 Query 66583 GAGGTCTTTCAACGATCTTGTTGTTTATTTTCAACAAGTAGGATTTTTCCAAAGTTTTAA 66642 | |||| || || ||||| || || |||| ||| ||||| |||| ||||| | Sbjct 142495 GCGGTCGCTCCACAATCTTACCCTTGATCTTCAGCAAATAGGAACGCTCCAGTGTTTTGA 142554 Query 66643 AACCAAAATAGTTGTATGAAAAGTCTCGTTCGTAAATAATAACCGAGTTGAG 66694 | || ||||||||||| || || || |||||||| || ||||||| || Sbjct 142555 AGCCGAAATAGTTGTACCCGAAATCACGGTCGTAAATGATGGCCGAGTTCAG 142606 >seq24 Length=2206587 Score = 100 bits (110), Expect = 4e-16 Identities = 178/258 (69%), Gaps = 5/258 (2%) Strand=Plus/Plus Query 36146 TTAAACATCAAACATGCGAAATCGCAGTGTAGACCCTCGTCTCTACTAATTAATTCGTTG 36205 || ||||||| || |||||||| || || | |||||||| || ||| | ||||| Sbjct 1947559 TTGAACATCAGGCAGGCGAAATCACAATGCAATCCCTCGTCCCTCGAAATCAGCTCGTTC 1947618 Query 36206 GAAAACGTGAGTCCGGGCATTAGGCCACGCTTTTTAAGCCAAAATATGGACGCAAATGAT 36265 || || || || || ||||| ||||||||||| || ||||| || ||||||||||| Sbjct 1947619 GAGAAGGTAAGACCCGGCATAAGGCCACGCTTCTTGAGCCAGAAGATGGACGCAAAGCTG 1947678 Query 36266 CCAGAAAAGAAAATTCCTTCTACTGCCGCAAAGGCAATAAGTCTCTCTCCA----TAACC 36321 || ||||| || || || || || ||||| || | | | ||| ||| || || Sbjct 1947679 CCGCTGAAGAAGATACCCTCGACGGCAGCAAATGCGACCACACGCTCGCCAAAGTTAGCC 1947738 Query 36322 GGCACTGTCATGTATCCACTTTTGAGCCCAATCGGCCTTCTTTTTTACACAAGGCATTGT 36381 | || | ||||| || | ||||| || |||||||| || || || || | || Sbjct 1947739 TTCTTGCTCGAG-ATCCAGTTAAGCGCCCAGTCTGCCTTCTTCTTCACGCACGGTAGCGT 1947797 Query 36382 CTCTATAGCATTAAAGAG 36399 || || |||||||| || Sbjct 1947798 TTCGATGGCATTAAACAG 1947815 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 657980523043640