Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Anopheles_20stephensi_20[genbank_20GCA_5F000300775.2_202013-07-19]
23,371 sequences; 221,324,304 total letters
Query= NC_003391.1
Length=205719
Score E
Sequences producing significant alignments: (Bits) Value
seq59 421 9e-113
seq24 100 4e-16
>seq59
Length=1145648
Score = 421 bits (466), Expect = 9e-113
Identities = 1213/1852 (65%), Gaps = 28/1852 (2%)
Strand=Plus/Plus
Query 64860 GCGGGTTTCGTACGTAGATAGTACATTCCCGTTTTTAGACCGAGACTCCATCCGTAAAAA 64919
|| ||||| || || ||||||||||| |||||||| || || | |||| ||||||||
Sbjct 140766 GCCGGTTTTGTTCGCAGATAGTACATGCCCGTTTTCAGTCCCATTTTCCAGCCGTAAAAG 140825
Query 64920 TGCATACTCGTTAGTTTGGAATAACTCGGATCTGCTATATGGATATTCATAGATTGACTT 64979
|| || || || ||| ||| |||| || || | || || || | |||||
Sbjct 140826 TGGATCGATGTCAGCTTGCCATAGTTCGGTTCGGCCACGTGTATGTTGAACGATTGCGAC 140885
Query 64980 TGATCGATGAAGGCTCCCCTGTCTGCAGCCATTTTTATGATCGTCTTTTGTGGAATTTCC 65039
|||||||| || || |||| ||| |||||||| || ||| ||| || | ||| |||
Sbjct 140886 TGATCGATAAACGCACCCCGGTCAGCAGCCATCTTAATGCACGTTTTAACCGAAATCTCC 140945
Query 65040 CAAATAGTTTTATAAAC-TCGCTTAATATCTTCTGGAAGGTTTGTATTCT--GAATGGAT 65096
|| | ||||| || | |||| || | |||| | | | || || || |||| |||
Sbjct 140946 CACACCGTTTTGTACAGATCGCGTATTTCCTTCGGTATCGATTCGATGCTTTGAATCGAT 141005
Query 65097 CCACCATCTGCCATAATCCTATTCTTGATCTCATCATTCCATAATTTTCTCTCGGTTAAA 65156
|| | | || ||| ||||| || || || ||| | || | || |||
Sbjct 141006 CCGTTGTTGGACAGAATTTGGTTCTTCATGTCTAGATCCCACAGACCCATCGCTGTCAAA 141065
Query 65157 ACTCTAAGGAGATGCGGATTAACTACTTGAAATTCTCCAGACAATACTCTCCGAGTGTAA 65216
|| || ||||| | || || || ||||| || || || | ||| | |||| |||||
Sbjct 141066 TCTTGCAGCAGATGGTGGTTCACCACCTGAAACTCGCCGGAAAGTACACGCCGATTGTAA 141125
Query 65217 ATATTACTGGTATACGGTTCCACAGACTCATTATTTCCCAAAATTTGAGCAGTTGATGCA 65276
| || || |||||||| | ||||| || || ||||| ||||| || || || ||
Sbjct 141126 ACGTTGGACGTGTACGGTTCGAAGGACTCGTTGTTACCCAAGATTTGTGCCGTCGAAGCG 141185
Query 65277 GTCGGCATAGGTGCCACCAATAAACTATTTCTAAGACCGTATGTTCTGATTTTATCTTTT 65336
|| ||||| ||||||| || | ||| | | |||| || ||||| || ||
Sbjct 141186 GTAGGCATCGGTGCCAACAGCAGCGAATTGCGGATGCCGTGCTTTGCAATTTTTTCCTTC 141245
Query 65337 AGAGGTTCCCAATTCCAAAGATCCGACGGTACAACNNNNNNNNNNNNNNNTTGTAGAATA 65396
| ||||||||||||||||||||||| | || || ||
Sbjct 141246 AACTCGGCCCAATTCCAAAGATCCGACGGTTCCTTCTTCCACATTTCGTACTGCAGGATG 141305
Query 65397 CCGTTACTGGC-GTACGATCCTACATATGTATCGTATGGTCCTTCCTTCTCAGCTAGTTC 65455
|| || || | | || ||| | || || ||||| ||||| || | || | ||
Sbjct 141306 CCTTTGCTTACCGGACTC-CCTTCGTACGTTTCGTACGGTCCGTCGCGGGCGGCCAACTC 141364
Query 65456 ACAACTCGCCTCTAATGCACCGTAATAAATGGTTTCGAAGATCTTCTTATTTAGATCTTG 65515
||| ||||| || ||||| ||||| || || |||||||| || | | || || | |||
Sbjct 141365 ACAGCTCGCTTCCAATGCTCCGTAGTAGATTGTTTCGAAAATTTGTTGGTTCAGCTTTTG 141424
Query 65516 TGCTTCCAGGCTATCAAATGGATAATTTAAGAGAATAAACGCGTCTGCTAATCCTTGAAC 65575
|| ||| ||| || | ||||| | | ||| ||||| || || | || |||||
Sbjct 141425 GGCCTCCTCGCTTTCGTACGGATAGCGCATCAAAATGAACGCATCGGCCATGCCCTGAAC 141484
Query 65576 ACCAATACCGATAGGTCTATGTCTCTTATTAGAGATTTCAGCTTCTGGAATAGGATAATA 65635
||| |||||||| || || || | | | || ||| | || || || | ||||| ||
Sbjct 141485 ACCGATACCGATCGGCCTGTGCCGCATGTTGGAGCGCTTCGCCTCCGGTACTGGATAGTA 141544
Query 65636 ATTAATATCTATAATTTTATTGAGATTTCT-GACAATTACTTTGACCACATCCTTCAGTT 65694
|| ||||| |||||||| || ||||| | | ||| ||| | | ||||||||||| |
Sbjct 141545 GTTTATATCGATAATTTTGTTCAGATTGCGCGTCAAAATCTTCG-CGACATCCTTCAGCT 141603
Query 65695 TGAGAAAATCAAATCGCTCATC---TATTACAAACATGTTCAATGCAACAGATGCCAGAT 65751
|| ||| || | | || | | ||||||||||||| || | || |||| ||
Sbjct 141604 TGGCAAAGTCGTACGTTTTGTCCGGTTTCACAAACATGTTCAGCGCGATCGAGGCCAAAT 141663
Query 65752 TACAAACGGCTACCTCATTAGCATC--CGCATATTGTATTATCTCAGTGCAAAGATTACT 65809
| || || |||| |||| | || || || | | |||||| || || |||||
Sbjct 141664 TGCACACCGCTATTTCATC--CTTCGACGAGTACTCCACTATCTCGGTACACAGATTGGA 141721
Query 65810 ACACTTGATGGTTCCTAAATTTTGTTGATTACTCTTTTTGTTACACGCATCCTTATAAAG 65869
|||||| ||||| || | || || ||||| ||||| ||| ||||||||||| || ||
Sbjct 141722 ACACTTTATGGTGCCGATGTTCTGCTGATTGCTCTTGCGGTTGCACGCATCCTTGTACAG 141781
Query 65870 AATGAATGGAGTACCAGTTTCAATCTGAGATTCTATAATCGCTTTCCAGACGACTCGAGC 65929
||| | ||| || ||||| | ||| ||||| || || || ||| | | | | ||
Sbjct 141782 CATGTACGGAACGCCCGTTTCCACCTGCGATTCGATGATGGCAAACCATAGGTCCTGTGC 141841
Query 65930 CTTTATTATAGATTTGTATCTCTTTTCTCTT--TCGTAT--AGTGTATACAATCGTTCGA 65985
||| | | | || || ||| | ||||| |||||| | || ||||
Sbjct 141842 CTTCACCT--GGCGTATAAATCGACCCTCCTGCTCGTACCCAGTGTACAGCTTC--TCGA 141897
Query 65986 ACTCGTCTCCCCAAACATTGTCCAATCCAGGACATTCATCCGGACACATCAACGACCACT 66045
|||| || |||||| | ||||||| || || || | || ||||||| ||||
Sbjct 141898 ACTCTTCGCCCCAAGTGTCAGCCAATCCGGGGCAGTCGTGTGGGCACATCAGGCTCCACA 141957
Query 66046 CTCCGTCATCCTTCACTCGTTTCATAAAGAGATCAGGAATCCAAAGAGCTATAAATAAAT 66105
| ||| ||| ||| || | ||| || ||||| || ||||| || || || | |
Sbjct 141958 TTTCGTTCGCCTCCACACGCTGCATGAACAGATCCGGGATCCACAGGGCGTAGAACATGT 142017
Query 66106 CTCTGGTTCTATGTTCCTCGTTTCCTGTATTCTTTTTAAGATCGAGGAACGCCATAATAT 66165
| | || | ||||| || || || || || || ||||| || ||| | | ||||
Sbjct 142018 CGCGGGCACGCACCTCCTCCTTGCCGGTGTTTTTCTTCAGATCCAGAAACTCGAATATAT 142077
Query 66166 CATAATGCCACGGTTCCAAGTATATGGCCATAACTCCAGGCCGTTTGTTTCCTCCCTGAT 66225
| ||||| ||||| | ||| ||||| | | || ||||| ||||| || |||||||
Sbjct 142078 CCCCGTGCCATGGTTCGAGGTAGATGGCAAAGGCGCCGGGCCGCTTGTTGCCACCCTGAT 142137
Query 66226 CTATGTATCTAGCGGTGTTATTATAAACTCTCAACATTGGAATAATACCATTGGATGTAC 66285
| | ||| | || ||||| || ||||| | || ||| || | | || || || | |
Sbjct 142138 CCACGTACCGGGCCGTGTTGTTGTAAACGCGCAGCATCGGCACCAACCCGTTCGAAATCC 142197
Query 66286 CATTGGTCCCGGAGATATAGCTTCCACTTGCACGAAT--ATTACTAATTGATAGACCTAT 66343
|||| || |||||||| || |||| | || ||||| | | | || | | || ||
Sbjct 142198 CATTCGTGCCGGAGATGTACGTTCCTTTGGCGCGAATGCAGTGCACGTTCA--GCCCGAT 142255
Query 66344 TCCCCCTGCCATTTTAGAGATTAATGCGCATCGTTTTAACGTATCATAGATGCCCTCTAT 66403
|| || ||| ||| || || | ||| || | |||| |||||| || || ||||| ||
Sbjct 142256 ACCGCCGGCCGATTTGGAAATCAGTGCACACTGCTTTAGCGTATCGTAAATACCCTCAAT 142315
Query 66404 ACTATCATCCATCATGTTAAGTAGAAAACAGCTAGACATTTGGTGACGACTAGTTCCCGC 66463
||| || ||| |||| |||| ||||| || || | || |||| || | ||
Sbjct 142316 ACTGTCGTCCGACATGGTAAGCAGAAAGCAAGACGAAAGCTGCGGACGCTGCGTAGCGGC 142375
Query 66464 ATTAAATAAGGTAGGAGAAGCGTGCGTAAACCATTTTTCAGAAAGTAGATTGTACGTCTC 66523
||| | ||| || || || || ||||| | || ||||| ||||||||||||||
Sbjct 142376 CGCAAACATGGTCGGTGAGGCATGGGTAAAGTAGCGCTCGGAAAGCAGATTGTACGTCTC 142435
Query 66524 AATAGCTGAGTCTATATC-CCATTGATGAATTCCTACTGCGACACGCATTAACATGTGCT 66582
|| || | || || || || | ||||| || | || || ||||| | |||||| |
Sbjct 142436 GATGGCAGCATCAATGTCTTCACCG-TGAATACCGATGGCAACGCGCATCAGCATGTGTT 142494
Query 66583 GAGGTCTTTCAACGATCTTGTTGTTTATTTTCAACAAGTAGGATTTTTCCAAAGTTTTAA 66642
| |||| || || ||||| || || |||| ||| ||||| |||| ||||| |
Sbjct 142495 GCGGTCGCTCCACAATCTTACCCTTGATCTTCAGCAAATAGGAACGCTCCAGTGTTTTGA 142554
Query 66643 AACCAAAATAGTTGTATGAAAAGTCTCGTTCGTAAATAATAACCGAGTTGAG 66694
| || ||||||||||| || || || |||||||| || ||||||| ||
Sbjct 142555 AGCCGAAATAGTTGTACCCGAAATCACGGTCGTAAATGATGGCCGAGTTCAG 142606
>seq24
Length=2206587
Score = 100 bits (110), Expect = 4e-16
Identities = 178/258 (69%), Gaps = 5/258 (2%)
Strand=Plus/Plus
Query 36146 TTAAACATCAAACATGCGAAATCGCAGTGTAGACCCTCGTCTCTACTAATTAATTCGTTG 36205
|| ||||||| || |||||||| || || | |||||||| || ||| | |||||
Sbjct 1947559 TTGAACATCAGGCAGGCGAAATCACAATGCAATCCCTCGTCCCTCGAAATCAGCTCGTTC 1947618
Query 36206 GAAAACGTGAGTCCGGGCATTAGGCCACGCTTTTTAAGCCAAAATATGGACGCAAATGAT 36265
|| || || || || ||||| ||||||||||| || ||||| || |||||||||||
Sbjct 1947619 GAGAAGGTAAGACCCGGCATAAGGCCACGCTTCTTGAGCCAGAAGATGGACGCAAAGCTG 1947678
Query 36266 CCAGAAAAGAAAATTCCTTCTACTGCCGCAAAGGCAATAAGTCTCTCTCCA----TAACC 36321
|| ||||| || || || || || ||||| || | | | ||| ||| || ||
Sbjct 1947679 CCGCTGAAGAAGATACCCTCGACGGCAGCAAATGCGACCACACGCTCGCCAAAGTTAGCC 1947738
Query 36322 GGCACTGTCATGTATCCACTTTTGAGCCCAATCGGCCTTCTTTTTTACACAAGGCATTGT 36381
| || | ||||| || | ||||| || |||||||| || || || || | ||
Sbjct 1947739 TTCTTGCTCGAG-ATCCAGTTAAGCGCCCAGTCTGCCTTCTTCTTCACGCACGGTAGCGT 1947797
Query 36382 CTCTATAGCATTAAAGAG 36399
|| || |||||||| ||
Sbjct 1947798 TTCGATGGCATTAAACAG 1947815
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 657980523043640
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |