Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Anopheles_20stephensi_20[genbank_20GCA_5F000300775.2_202013-07-19] 23,371 sequences; 221,324,304 total letters Query= NC_003663.2 Length=224499 Score E Sequences producing significant alignments: (Bits) Value seq59 419 3e-112 seq24 138 2e-27 >seq59 Length=1145648 Score = 419 bits (464), Expect = 3e-112 Identities = 1219/1855 (66%), Gaps = 34/1855 (2%) Strand=Plus/Plus Query 78739 GCGGGTTTCGTACGTAGATAGTACATTCCCGTTTTTAGACCGAGACTCCATCCGTAGAAA 78798 || ||||| || || ||||||||||| |||||||| || || | |||| ||||| || Sbjct 140766 GCCGGTTTTGTTCGCAGATAGTACATGCCCGTTTTCAGTCCCATTTTCCAGCCGTAAAAG 140825 Query 78799 TGCATACTCGTTAGTTTGGAATAACTCGGATCTGCTATATGGATATTCATAGATTGACTT 78858 || || || || ||| ||| |||| || || | || || || | ||||| Sbjct 140826 TGGATCGATGTCAGCTTGCCATAGTTCGGTTCGGCCACGTGTATGTTGAACGATTGCGAC 140885 Query 78859 TGATCGATGAAGGCTCCCCTGTCTGCAGCCATTTTTATGATCGTCTTTTGTGGAATTTCC 78918 |||||||| || || |||| ||| |||||||| || ||| ||| || | ||| ||| Sbjct 140886 TGATCGATAAACGCACCCCGGTCAGCAGCCATCTTAATGCACGTTTTAACCGAAATCTCC 140945 Query 78919 CAAATAGTTTTATAAAC-TCGCTTAATATCTTCTGGAAGGTTTGTATTCT--GAATGGAT 78975 || | ||||| || | |||| || | |||| | | | || || || |||| ||| Sbjct 140946 CACACCGTTTTGTACAGATCGCGTATTTCCTTCGGTATCGATTCGATGCTTTGAATCGAT 141005 Query 78976 CCACCATCTGCCATAATCCTATTCTTGATCTCTTCATTCCATAATTTTCTCTCGGTTAAA 79035 || | | || ||| ||||| || ||| || ||| | || | || ||| Sbjct 141006 CCGTTGTTGGACAGAATTTGGTTCTTCATGTCTAGATCCCACAGACCCATCGCTGTCAAA 141065 Query 79036 ACTCTAAGGAGATGCGGATTAACTACTTGAAATTCTCCAGACAATACTCTCCGAGTGTAA 79095 || || ||||| | || || || ||||| || || || | ||| | |||| ||||| Sbjct 141066 TCTTGCAGCAGATGGTGGTTCACCACCTGAAACTCGCCGGAAAGTACACGCCGATTGTAA 141125 Query 79096 ATATTACTGGTATATGGTTCCACCGATTCATTATTTCCCAAAATTTGAGCAGTTGATGCC 79155 | || || || ||||| | || || || || ||||| ||||| || || || || Sbjct 141126 ACGTTGGACGTGTACGGTTCGAAGGACTCGTTGTTACCCAAGATTTGTGCCGTCGAAGCG 141185 Query 79156 GTTGGCATAGGTGCCACCAATAAACTATTTCTAAGACCGTATGATCTG--ATTTTATCTT 79213 || ||||| ||||||| || | ||| | | |||| | | || ||||| || | Sbjct 141186 GTAGGCATCGGTGCCAACAGCAGCGAATTGCGGATGCCGT--GCTTTGCAATTTTTTCCT 141243 Query 79214 TTAGAGATTCCCAATCCCAAAGATCAGACGGGACAACATTCCAAAGATCATATTGTAGAA 79273 | | |||||| ||||||||| ||||| | ||||| | || || || || | Sbjct 141244 TCAACTCGGCCCAATTCCAAAGATCCGACGGTTCCTTCTTCCACATTTCGTACTGCAGGA 141303 Query 79274 TACCGTTACT-AGCGTATGATCCTGTGTATGTTTCATAAGGTCCTTCCTTTTCGGCTAAT 79332 | || || || | || | ||| ||| ||||| || ||||| || |||| || Sbjct 141304 TGCCTTTGCTTACCGGACTC-CCTTCGTACGTTTCGTACGGTCCGTCGCGGGCGGCCAAC 141362 Query 79333 TCACAACTCGCCTCTAATGCTCCGTAATAAATGGTTTCGAAAATCTTCTTATTGAGATCT 79392 ||||| ||||| || ||||||||||| || || ||||||||||| | | || || | | Sbjct 141363 TCACAGCTCGCTTCCAATGCTCCGTAGTAGATTGTTTCGAAAATTTGTTGGTTCAGCTTT 141422 Query 79393 TGTGCTTCTAGGCTATCAAATGGATAATTTAAGAGAATAAACGCGTCTGCTAATCCTTGA 79452 || || || ||| || | ||||| | | ||| ||||| || || | || ||| Sbjct 141423 TGGGCCTCCTCGCTTTCGTACGGATAGCGCATCAAAATGAACGCATCGGCCATGCCCTGA 141482 Query 79453 ACACCAATACCGATAGGTCTATGTCTCTTATTAGAAATTTCAGCTTCTGGAATAGGATAA 79512 ||||| |||||||| || || || | | | || || | || || || | ||||| Sbjct 141483 ACACCGATACCGATCGGCCTGTGCCGCATGTTGGAGCGCTTCGCCTCCGGTACTGGATAG 141542 Query 79513 TAATTAATATCTATAATTTTATTGAGATTCCT-GACTATTACTTTGACCACATCCTTTAG 79571 || || ||||| |||||||| || ||||| | | | | ||| | | |||||||| || Sbjct 141543 TAGTTTATATCGATAATTTTGTTCAGATTGCGCGTCAAAATCTTCG-CGACATCCTTCAG 141601 Query 79572 TTTGAGAAAATCAAA----TCGTCCATCTATTACAAACATGTTCAACGCGACAGATGCCA 79627 ||| ||| || | | |||| | | ||||||||||||| ||||| || |||| Sbjct 141602 CTTGGCAAAGTCGTACGTTTTGTCCGGTT-TCACAAACATGTTCAGCGCGATCGAGGCCA 141660 Query 79628 GATTACAAACGGCTACCTCATTAGCATC--CGCATATTGTATTATTTCAGTGCAGAGGTT 79685 ||| || || |||| |||| | || || || | | ||| || || || || || Sbjct 141661 AATTGCACACCGCTATTTCATC--CTTCGACGAGTACTCCACTATCTCGGTACACAGATT 141718 Query 79686 ACTACACTTAATGGTTCCTAAATTTTGTTGATTACTCTTTTTGTTACACGCATCCTTATA 79745 |||||| ||||| || | || || ||||| ||||| ||| ||||||||||| || Sbjct 141719 GGAACACTTTATGGTGCCGATGTTCTGCTGATTGCTCTTGCGGTTGCACGCATCCTTGTA 141778 Query 79746 AAGAATGAACGGAGTACCAGTTTCAATCTGAGATTCTATAATCGCTTTCCAGACGACTCG 79805 || ||| ||||| || ||||| | ||| ||||| || || || ||| | | | | Sbjct 141779 CAGCATGTACGGAACGCCCGTTTCCACCTGCGATTCGATGATGGCAAACCATAGGTCCTG 141838 Query 79806 AGCCTTTATTATAGACTTGTATCTCTTTTCTCTT--TCGTATT--GTGTATATAATCGTT 79861 ||||| | | | | || || ||| | ||||| ||||| | || | Sbjct 141839 TGCCTTCACCT--GGCGTATAAATCGACCCTCCTGCTCGTACCCAGTGTACAGCTTC--T 141894 Query 79862 CGAACTCGTCTCCCCAAACATCGTCTAATCCAGGACATTCGTCAGGACACATCAACGACC 79921 ||||||| || |||||| || | ||||| || || |||| || ||||||| || Sbjct 141895 CGAACTCTTCGCCCCAAGTGTCAGCCAATCCGGGGCAGTCGTGTGGGCACATCAGGCTCC 141954 Query 79922 ACTCTCCATCATCCTTTACTCGTTTCATAAAGAGATCAGGAATCCAAAGAGCTATAAATA 79981 || | | | ||| || || | ||| || ||||| || ||||| || || || | Sbjct 141955 ACATTTCGTTCGCCTCCACACGCTGCATGAACAGATCCGGGATCCACAGGGCGTAGAACA 142014 Query 79982 GATCTCTGGTTCTATGCTCCTCGTTTCCTGTATTCTTTTTAAGATCGAGGAACGCCATAA 80041 || | || | |||||| || || || || || || ||||| || ||| | | | Sbjct 142015 TGTCGCGGGCACGCACCTCCTCCTTGCCGGTGTTTTTCTTCAGATCCAGAAACTCGAATA 142074 Query 80042 TATCAGAATGCCACGGTTCCAAGTATATGGCCATAACTCCCGGTCGTTTGTTTCCTCCCT 80101 |||| ||||| ||||| | ||| ||||| | | || || || ||||| || |||| Sbjct 142075 TATCCCCGTGCCATGGTTCGAGGTAGATGGCAAAGGCGCCGGGCCGCTTGTTGCCACCCT 142134 Query 80102 GATCTATGTATCTAGCGGTGTTATTATAAACTCTCAACATTGGAATAATACCATTGGATG 80161 |||| | ||| | || ||||| || ||||| | || ||| || | | || || || Sbjct 142135 GATCCACGTACCGGGCCGTGTTGTTGTAAACGCGCAGCATCGGCACCAACCCGTTCGAAA 142194 Query 80162 TACCATTGGTCCCGGAGATATAGCTTCCACTGGCACGAAT--ATTACTAATTGATAGACC 80219 | ||||| || |||||||| || |||| |||| ||||| | | | || | | || Sbjct 142195 TCCCATTCGTGCCGGAGATGTACGTTCCTTTGGCGCGAATGCAGTGCACGTTCA--GCCC 142252 Query 80220 TATTCCCCCTGCCATTTTAGAGATTAATGCGCATCGTTTTAACGTATCATAGATGCCCTC 80279 || || || ||| ||| || || | ||| || | |||| |||||| || || ||||| Sbjct 142253 GATACCGCCGGCCGATTTGGAAATCAGTGCACACTGCTTTAGCGTATCGTAAATACCCTC 142312 Query 80280 TATGCTATCATCAATCATGTTAAGTAGAAAACAGCTAGACATTTGGTGACGACTAGTTCC 80339 || || || || |||| |||| ||||| || || | || |||| || | Sbjct 142313 AATACTGTCGTCCGACATGGTAAGCAGAAAGCAAGACGAAAGCTGCGGACGCTGCGTAGC 142372 Query 80340 CGCATTAAATAAGGTAGGAGAAGCGTGCGTAAACCATTTTTCAGACAGTAGATTGTACGT 80399 || ||| | ||| || || || || ||||| | || || || ||||||||||| Sbjct 142373 GGCCGCAAACATGGTCGGTGAGGCATGGGTAAAGTAGCGCTCGGAAAGCAGATTGTACGT 142432 Query 80400 CTCAATAGCTGATTCTATATC-CCATTGATGAATTCCTACCGCGACACGCATTAACATGT 80458 ||| || || | || || || || | ||||| || | || || ||||| | ||||| Sbjct 142433 CTCGATGGCAGCATCAATGTCTTCACCG-TGAATACCGATGGCAACGCGCATCAGCATGT 142491 Query 80459 GCTGAGGTCTTTCAACGATCTTGTTATTTATTTTCAACAAGTAAGATTTTTCCAAAGTTT 80518 | || |||| || || ||||| || || |||| ||| || || |||| |||| Sbjct 142492 GTTGCGGTCGCTCCACAATCTTACCCTTGATCTTCAGCAAATAGGAACGCTCCAGTGTTT 142551 Query 80519 TAAAACCAAAATAGTTGTATGAAAAGTCTCGTTCGTAAATAATAACCGAGTTGAG 80573 | || || ||||||||||| || || || |||||||| || ||||||| || Sbjct 142552 TGAAGCCGAAATAGTTGTACCCGAAATCACGGTCGTAAATGATGGCCGAGTTCAG 142606 >seq24 Length=2206587 Score = 138 bits (152), Expect = 2e-27 Identities = 190/261 (73%), Gaps = 11/261 (4%) Strand=Plus/Plus Query 49948 TTAAACATCAAACATGCGAAATCGCAGTGCAGACCCTCGTCTCTACTAATTAGTTCGTTG 50007 || ||||||| || |||||||| || |||| |||||||| || ||| || ||||| Sbjct 1947559 TTGAACATCAGGCAGGCGAAATCACAATGCAATCCCTCGTCCCTCGAAATCAGCTCGTTC 1947618 Query 50008 GAAAACGTGAGTCCGGGCATTAGGCCACGCTTTTTAAGCCAAAATATGGACGCAAA--TG 50065 || || || || || ||||| ||||||||||| || ||||| || ||||||||||| || Sbjct 1947619 GAGAAGGTAAGACCCGGCATAAGGCCACGCTTCTTGAGCCAGAAGATGGACGCAAAGCTG 1947678 Query 50066 ACCCAGAAAAGAAGATTCCTTCTACTGCGGCAAAGGCAACAAGTCTCTCTCCATAACTGG 50125 | | | |||||||| || || || || ||||| || || | | ||| ||| | | | Sbjct 1947679 CCGCTG--AAGAAGATACCCTCGACGGCAGCAAATGCGACCACACGCTCGCCAAAGTTAG 1947736 Query 50126 CGCTGTCATG-----TATCCACTTTTGAGCCCAATCGGCCTTCTTTTTTACACAAGGCAT 50180 | || || || ||||| || | ||||| || |||||||| || || || || | Sbjct 1947737 C-CT-TCTTGCTCGAGATCCAGTTAAGCGCCCAGTCTGCCTTCTTCTTCACGCACGGTAG 1947794 Query 50181 CGTTTCTATGGCATTAAAGAG 50201 |||||| ||||||||||| || Sbjct 1947795 CGTTTCGATGGCATTAAACAG 1947815 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 718058966748440