Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Anopheles_20stephensi_20[genbank_20GCA_5F000300775.2_202013-07-19] 23,371 sequences; 221,324,304 total letters Query= NC_004105.1 Length=209771 Score E Sequences producing significant alignments: (Bits) Value seq59 365 6e-96 seq24 114 2e-20 >seq59 Length=1145648 Score = 365 bits (404), Expect = 6e-96 Identities = 1217/1882 (65%), Gaps = 28/1882 (1%) Strand=Plus/Plus Query 70792 TTGTCCAATGTAAACTGAATGGGAGAGGATGCGGCTTTCGTACGTAGATAGTACATGCCT 70851 ||||||| |||||||| || | | || | ||| || || |||||||||||||| Sbjct 140736 TTGTCCACCGTAAACTGGATCGCATTTACGGCCGGTTTTGTTCGCAGATAGTACATGCCC 140795 Query 70852 GTTTTTAGACCGAGACTCCATCCGTAAAAATGCATACTCGTTAGTTTGGAATAGCTAGGA 70911 ||||| || || | |||| |||||||| || || || || ||| |||| | || Sbjct 140796 GTTTTCAGTCCCATTTTCCAGCCGTAAAAGTGGATCGATGTCAGCTTGCCATAGTTCGGT 140855 Query 70912 TCGGCTATGTGAATATTCATCGACTGACTTTGATCGATGAAGGCTCCCCTGTCTGCAGCC 70971 ||||| | ||| || || | ||| || |||||||| || || |||| ||| |||||| Sbjct 140856 TCGGCCACGTGTATGTTGAACGATTGCGACTGATCGATAAACGCACCCCGGTCAGCAGCC 140915 Query 70972 ATTTTTATGATCGTCTTTTGTGGAATTTCCCAAATAGTTTTATAAAC-TCGCTTAATATC 71030 || || ||| ||| || | ||| ||||| | ||||| || | |||| || | | Sbjct 140916 ATCTTAATGCACGTTTTAACCGAAATCTCCCACACCGTTTTGTACAGATCGCGTATTTCC 140975 Query 71031 TTCTGGAAGGTTTGTATTCT--GAATGGATCCACCATCTGCAATAATCCTATTTTTGATC 71088 ||| | | | || || || |||| ||||| | | | ||| || || || Sbjct 140976 TTCGGTATCGATTCGATGCTTTGAATCGATCCGTTGTTGGACAGAATTTGGTTCTTCATG 141035 Query 71089 TCTTCATTCCATAATTTTCTCTCGGTTAAAACTCTAAGGAGATGAGGATTAACTACTTGA 71148 ||| || ||| | || | || ||| || || ||||| | || || || ||| Sbjct 141036 TCTAGATCCCACAGACCCATCGCTGTCAAATCTTGCAGCAGATGGTGGTTCACCACCTGA 141095 Query 71149 AATTCTCCAGACAATACTCTACGAGTGTAAATATTACTGGTATACGGTTCCACTGACTCA 71208 || || || || | ||| | ||| |||||| || || |||||||| | ||||| Sbjct 141096 AACTCGCCGGAAAGTACACGCCGATTGTAAACGTTGGACGTGTACGGTTCGAAGGACTCG 141155 Query 71209 TTATTTCCCAAAATTTGAGCAGTTGATGCAGTCGGCATAGGTGCCACCAATAGACTATTT 71268 || || ||||| ||||| || || || || || ||||| ||||||| || || ||| Sbjct 141156 TTGTTACCCAAGATTTGTGCCGTCGAAGCGGTAGGCATCGGTGCCAACAGCAGCGAATTG 141215 Query 71269 CTAAGACCATGTGATCGGATTTTATCTTTTAGAGATTCCCAATTCCAAAGATCCGATGGT 71328 | | || || | ||||| || || | ||||||||||||||||||| ||| Sbjct 141216 CGGATGCCGTGCTTTGCAATTTTTTCCTTCAACTCGGCCCAATTCCAAAGATCCGACGGT 141275 Query 71329 ACAACNNNNNNNNNNNNNNNNNNNNNNATGCCGTTACT-AGCGTATGATCCTGCATATGT 71387 | ||||| || || | || | ||| | || || Sbjct 141276 TCCTTCTTCCACATTTCGTACTGCAGGATGCCTTTGCTTACCGGACTC-CCTTCGTACGT 141334 Query 71388 ATCGTATGGTCCTTCTTTTTCGGCTAGTTCACAACTCGCCTCTAATGCTCCATAATAAAT 71447 ||||| ||||| || |||| | ||||| ||||| || |||||||| || || || Sbjct 141335 TTCGTACGGTCCGTCGCGGGCGGCCAACTCACAGCTCGCTTCCAATGCTCCGTAGTAGAT 141394 Query 71448 GGTTTCGAAAATCTTCTTATTGAGATCTTGTGCTTCCGGGCTATCAAATGGATAATTTAA 71507 ||||||||||| | | || || | ||| || ||| ||| || | ||||| | Sbjct 141395 TGTTTCGAAAATTTGTTGGTTCAGCTTTTGGGCCTCCTCGCTTTCGTACGGATAGCGCAT 141454 Query 71508 GAGAATAAACGCGTCTGCTAATCCTTGAACGCCAATACCGATAGGTCTGTGTCTCTTATT 71567 | ||| ||||| || || | || ||||| || |||||||| || ||||| | | | || Sbjct 141455 CAAAATGAACGCATCGGCCATGCCCTGAACACCGATACCGATCGGCCTGTGCCGCATGTT 141514 Query 71568 AGAAATTTCAGCTTCTGGAATAGGATAATAATTAATATCTATAATTTTATTGAGATTTCT 71627 || | || || || | ||||| || || ||||| |||||||| || ||||| | Sbjct 141515 GGAGCGCTTCGCCTCCGGTACTGGATAGTAGTTTATATCGATAATTTTGTTCAGATTGCG 141574 Query 71628 -GACTATTACTTTGACCACATCCTTTAGTTTGAGAAAATCAAATCTCCCATC---TATTA 71683 | | | ||| | | |||||||| || ||| ||| || | | || | | | Sbjct 141575 CGTCAAAATCTTCG-CGACATCCTTCAGCTTGGCAAAGTCGTACGTTTTGTCCGGTTTCA 141633 Query 71684 CAAACACGTTCAAGGCAACAGATGCCAGATTACAAACGGCTACCTCATTAGCATCGGCA- 71742 |||||| ||||| || | || |||| ||| || || |||| |||| | ||| | Sbjct 141634 CAAACATGTTCAGCGCGATCGAGGCCAAATTGCACACCGCTATTTCATC--CTTCGACGA 141691 Query 71743 -TATTGTATAATTTCAGTGCAAAGATTACTACACTTGATGGTTCCTAAATTTTGTTGATT 71801 || | | || || || || ||||| |||||| ||||| || | || || ||||| Sbjct 141692 GTACTCCACTATCTCGGTACACAGATTGGAACACTTTATGGTGCCGATGTTCTGCTGATT 141751 Query 71802 ACTCTTTTTGTTACACGCATCCTTATAAAGAATAAACGGAGTACCAGTTTCAATCTGAGA 71861 ||||| ||| ||||||||||| || || || ||||| || ||||| | ||| || Sbjct 141752 GCTCTTGCGGTTGCACGCATCCTTGTACAGCATGTACGGAACGCCCGTTTCCACCTGCGA 141811 Query 71862 TTCTATAATCGCTTTCCAGACGACTCGAGCCTTTATTATATTCTTGTATCTCTTTTCTCT 71921 ||| || || || ||| | | | | ||||| | | | || || ||| Sbjct 141812 TTCGATGATGGCAAACCATAGGTCCTGTGCCTTCACCTGG--CGTATAAATCGACCCTCC 141869 Query 71922 T--TCGTATT--GTGTATATAATCGTTCGAACTCGTCTCCCCAAGCATTGTCTAATCCAG 71977 | ||||| ||||| | || |||||||| || ||||||| | | ||||| | Sbjct 141870 TGCTCGTACCCAGTGTACAGCTTC--TCGAACTCTTCGCCCCAAGTGTCAGCCAATCCGG 141927 Query 71978 GACATTCATTCGGACACATCAATGACCACTCTCCATCATCATTTACTCGTTTCATAAAGA 72037 | || || | || ||||||| |||| | | | | | || || | ||| || | Sbjct 141928 GGCAGTCGTGTGGGCACATCAGGCTCCACATTTCGTTCGCCTCCACACGCTGCATGAACA 141987 Query 72038 GATCAGGAATCCAAAGAGCTATAAATAGATCTCTGGTTCTATGCTCCTCGTTTCCTGTAT 72097 |||| || ||||| || || || | || | || | |||||| || || || | Sbjct 141988 GATCCGGGATCCACAGGGCGTAGAACATGTCGCGGGCACGCACCTCCTCCTTGCCGGTGT 142047 Query 72098 TCTTTTTAAGATCGAGGAACGCCATAATATCAGAATGCCACGGTTCCAAGTATATGGCCA 72157 | || || ||||| || ||| | | ||||| ||||| ||||| | ||| ||||| | Sbjct 142048 TTTTCTTCAGATCCAGAAACTCGAATATATCCCCGTGCCATGGTTCGAGGTAGATGGCAA 142107 Query 72158 TAACTCCCGGCCGTTTGTTTCCTCCCTGATCTATGTATCTAGCGGTGTTATTATAAACTC 72217 | || ||||| ||||| || |||||||| | ||| | || ||||| || ||||| | Sbjct 142108 AGGCGCCGGGCCGCTTGTTGCCACCCTGATCCACGTACCGGGCCGTGTTGTTGTAAACGC 142167 Query 72218 TCAACATTGGAATAATACCATTGGATGCACCATTGGTCCCGGAGATATAGCTTCCACTGG 72277 || ||| || | | || || || ||||| || |||||||| || |||| ||| Sbjct 142168 GCAGCATCGGCACCAACCCGTTCGAAATCCCATTCGTGCCGGAGATGTACGTTCCTTTGG 142227 Query 72278 CACGAAT--ATTGCTAATTGATAGACCTATTCCCCCTGCCATTTTAGAGATTAATGCGCA 72335 | ||||| | ||| || | | || || || || ||| ||| || || | ||| || Sbjct 142228 CGCGAATGCAGTGCACGTTCA--GCCCGATACCGCCGGCCGATTTGGAAATCAGTGCACA 142285 Query 72336 TCGTTTTAACGTATCATAGATGCCCTCTATACTATCATCCATCATGTTAAGTAGAAAACA 72395 | |||| |||||| || || ||||| ||||| || ||| |||| |||| ||||| || Sbjct 142286 CTGCTTTAGCGTATCGTAAATACCCTCAATACTGTCGTCCGACATGGTAAGCAGAAAGCA 142345 Query 72396 GCTAGACATTTGGTGACGACTAGTTCCCGCATTAAATAAGGTAGGAGAAGCGTGCGTAAA 72455 || | || |||| || | || ||| | ||| || || || || ||||| Sbjct 142346 AGACGAAAGCTGCGGACGCTGCGTAGCGGCCGCAAACATGGTCGGTGAGGCATGGGTAAA 142405 Query 72456 CCATTTTTCAGACAGTAGATTGTACGTCTCAATAGCTGATTCTATATCC-CATTGATGTA 72514 | || || || |||||||||||||| || || | || || || || | || | Sbjct 142406 GTAGCGCTCGGAAAGCAGATTGTACGTCTCGATGGCAGCATCAATGTCTTCACCG-TGAA 142464 Query 72515 TTCCTACCGCGACACGCATTAACATATGCTGAGGTCTTTCAACGATCTTGTTATTTATTT 72574 | || | || || ||||| | ||| || || |||| || || ||||| || || | Sbjct 142465 TACCGATGGCAACGCGCATCAGCATGTGTTGCGGTCGCTCCACAATCTTACCCTTGATCT 142524 Query 72575 TCAACAAGTAGGATTTTTCCAAAGTTTTAAAACCAAAATAGTTGTATGAAAAGTCTCGTT 72634 ||| ||| ||||| |||| ||||| || || ||||||||||| || || || | Sbjct 142525 TCAGCAAATAGGAACGCTCCAGTGTTTTGAAGCCGAAATAGTTGTACCCGAAATCACGGT 142584 Query 72635 CGTAAATAATAACCGAATTGAG 72656 ||||||| || |||| || || Sbjct 142585 CGTAAATGATGGCCGAGTTCAG 142606 >seq24 Length=2206587 Score = 114 bits (126), Expect = 2e-20 Identities = 181/258 (70%), Gaps = 5/258 (2%) Strand=Plus/Plus Query 42053 TTAAACATCAAACATGCGAAATCGCAGTGCAGACCCTCATCTCTACTAATTAATTCGTTG 42112 || ||||||| || |||||||| || |||| ||||| || || ||| | ||||| Sbjct 1947559 TTGAACATCAGGCAGGCGAAATCACAATGCAATCCCTCGTCCCTCGAAATCAGCTCGTTC 1947618 Query 42113 GAAAACGTGAGTCCGGGCATTAGGCCACGCTTTTTAAGCCAAAATATAGACGCAAATGAT 42172 || || || || || ||||| ||||||||||| || ||||| || || |||||||| Sbjct 1947619 GAGAAGGTAAGACCCGGCATAAGGCCACGCTTCTTGAGCCAGAAGATGGACGCAAAGCTG 1947678 Query 42173 CCAGAAAAGAAGATTCCTTCTACTGCCGCAAAGGCAATAAGTCTCTCTCCA----TAACC 42228 || |||||||| || || || || ||||| || | | | ||| ||| || || Sbjct 1947679 CCGCTGAAGAAGATACCCTCGACGGCAGCAAATGCGACCACACGCTCGCCAAAGTTAGCC 1947738 Query 42229 GGCACTGTCATGTATCCACTTTTGAGCCCAATCGGCCTTCTTTTTTACACAAGGCATCGT 42288 | || | ||||| || | ||||| || |||||||| || || || || | ||| Sbjct 1947739 TTCTTGCTCGAG-ATCCAGTTAAGCGCCCAGTCTGCCTTCTTCTTCACGCACGGTAGCGT 1947797 Query 42289 TTCTATGGCATTAAAGAG 42306 ||| ||||||||||| || Sbjct 1947798 TTCGATGGCATTAAACAG 1947815 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 670943135071960