Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Anopheles_20stephensi_20[genbank_20GCA_5F000300775.2_202013-07-19] 23,371 sequences; 221,324,304 total letters Query= NC_004117.1 Length=158482 Score E Sequences producing significant alignments: (Bits) Value seq57 91.5 1e-13 seq59 84.2 2e-11 >seq57 Length=1190389 Score = 91.5 bits (100), Expect = 1e-13 Identities = 149/215 (69%), Gaps = 0/215 (0%) Strand=Plus/Plus Query 142970 CGCAAAACTAAATGAATTGTAGATTCTTTTTGTATGTTGTAATCGCTCATTGTGCTCGAG 143029 |||| || | ||||| |||||||| || || |||||||| || || |||| Sbjct 631310 CGCAGCACCAGATGAAGGGTAGATTCCTTCTGAATGTTGTAGTCCGACAGGGTGCGACCA 631369 Query 143030 TCTTCGAGTTGTTTACCAGCATAGATCAGACGTTGCTGATCGGGAGGTATGCCTTCTTTG 143089 || || || || || || || |||| ||||| |||||||| ||||| || ||||| || Sbjct 631370 TCCTCCAGCTGCTTGCCGGCGAAGATGAGACGCTGCTGATCTGGAGGAATTCCTTCCTTA 631429 Query 143090 TCGGTAATTTTTTGTTTTAGCTGTTCCACCGTGTCCGTGGGTTCTACTTCAACAGTCACC 143149 || || || || | | || | |||||||| || || || |||| || | Sbjct 631430 TCCTGGATCTTGGCCTTCACATTCTCGATCGTGTCCGAAGGCTCGACCTCAAGTGTGATG 631489 Query 143150 GTCTTGCCGGTCAATGTTTTTACGAATATTTGCAT 143184 ||||||||||| | |||||| ||||| || ||||| Sbjct 631490 GTCTTGCCGGTGAGTGTTTTCACGAAAATCTGCAT 631524 >seq59 Length=1145648 Score = 84.2 bits (92), Expect = 2e-11 Identities = 130/183 (71%), Gaps = 2/183 (1%) Strand=Plus/Plus Query 156143 ACGGTAAATTGCTGCGAATTGGCCGCCGGAAGTGTGCGAAAATAGTACATGCCGGTTTTG 156202 || ||||| || || ||| | ||||| ||| || | |||||||||||| ||||| Sbjct 140742 ACCGTAAACTGGATCGCATTTACGGCCGGTTTTGTTCGCAGATAGTACATGCCCGTTTTC 140801 Query 156203 AGGCCGCGCTTCCAACCGTACATGTGCACCGACGCCATTTTAGGCAAAGTAGGGTTTG-C 156261 || || ||||| ||||| | ||| | ||| | || || | || ||| |||| | | Sbjct 140802 AGTCCCATTTTCCAGCCGTAAAAGTGGATCGATGTCAGCTT-GCCATAGTTCGGTTCGGC 140860 Query 156262 CATGTACACGTTGAACGATTGACTTTGATCGATAAATGCTCCCCTGTCTGCTGCCATTTC 156321 || || | |||||||||||| ||||||||||| || |||| ||| || ||||| | Sbjct 140861 CACGTGTATGTTGAACGATTGCGACTGATCGATAAACGCACCCCGGTCAGCAGCCATCTT 140920 Query 156322 AAT 156324 ||| Sbjct 140921 AAT 140923 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 506866282080720