Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Anopheles_20stephensi_20[genbank_20GCA_5F000300775.2_202013-07-19] 23,371 sequences; 221,324,304 total letters Query= NC_004156.2 Length=231621 Score E Sequences producing significant alignments: (Bits) Value seq58 228 1e-54 seq59 205 1e-47 seq14 158 2e-33 seq24 136 6e-27 seq66 107 3e-18 >seq58 Length=1184849 Score = 228 bits (252), Expect = 1e-54 Identities = 396/572 (69%), Gaps = 14/572 (2%) Strand=Plus/Minus Query 127102 TTGCGGTAAAAGATGACTCCGGCTCGAGGACCTCTGAGAGTCTTGTGCGTTGTAGTGGTC 127161 || ||| | ||||| || ||||| || ||||| | | ||||||||||| || ||| | Sbjct 292367 TTCCGGAAGAAGATAACACCGGCCCGCGGACCGCGCAACGTCTTGTGCGTCGTCGTGCTG 292308 Query 127162 ACAATGTCACAATACTCAAAGGGGCCAGGAATGACTTTGCCCGCAATCAAGCCCGCAATG 127221 |||| ||| ||||| || || || || || | | || | ||| || | |||| Sbjct 292307 ACAACGTCCGCGTACTCGAACGGTGACGGTATAACGCCGGCGGCTACCAAACCGGAAATG 292248 Query 127222 TGTGCAATATCGGCCATCAGCAAGGAGCCGG-CTGCATCGGCAATCTCTCGGAATCGTCT 127280 ||||| |||||||| | ||| | | ||| ||| ||| |||| || ||||| ||| | Sbjct 292247 TGTGCCATATCGGCGAACAGATACGCACCGTTCTGGTTCG-CAATTTCCCGGAAACGTTT 292189 Query 127281 ATAGTCCAAGCGCCGAGGATAGCAACTGGTGCCGGCTATGATTAGCCTAGGTTTGAATAG 127340 || |||| | || | ||||| | | ||||| ||||||| | | || ||||| || Sbjct 292188 GTAATCCAGACAGCGGGAGTAGCACGAGATACCGGCAATGATTACCTTCGGCTTGAACAG 292129 Query 127341 ATTGGCACTCTCGGCAAGTTTGGCATAGTCGACGAGTCCAGTCTGAGGATCCACCTTGTA 127400 || | || | | ||| | || |||| || || ||| ||||| |||||||| Sbjct 292128 GCGTGCCGTTTCCTCCATCTTGTCGTAATCGATCAGCCCGGTCACGGGATCGACCTTGTA 292069 Query 127401 CGGCATGCTTTCGAAAAAGAGTGATGTAGCGGACA-------CGT-TGCG----GAATCC 127448 ||||||||||||||| |||| || || ||||| | ||| |||| ||| || Sbjct 292068 CGGCATGCTTTCGAAGAAGATCGAGGTGGCGGAAATTTTCTTCGTCTGCGTCATGAAGCC 292009 Query 127449 GTGCGTCAGGTGGCCTCCGTCGGGCAGATCGAGTCCCATGATTCTACCGTGCGGTTTAAC 127508 ||||||||| ||||| ||||| ||||||||||| |||||||| | ||||||||||| || Sbjct 292008 GTGCGTCAGATGGCCACCGTCCGGCAGATCGAGACCCATGATGCGACCGTGCGGTTCAAT 291949 Query 127509 GATTCCAGTGTACACGGCAAAGTTGGCCATCGAGCCCGAGTACGGTTGTACACACACTCC 127568 | | ||||||||||||||||||||| |||||| || |||||||| || || Sbjct 291948 CAGCGCGGTGTACACGGCAAAGTTGGCCGGCGAGCCGGAATACGGTTGAACGTTGCAGCC 291889 Query 127569 CCATTCGGACTCGTTCAAATTGAACGCTCTGAGACATCGCTGCTGTGCTAGCAGTTCGAT 127628 ||| | | || || | ||||| || |||| ||| || ||||||||||| Sbjct 291888 CCACTGCTCCGGGTCCAGTCGGTACGCTTCCAGGGCACGCTTCTGGGCGAGCAGTTCGAT 291829 Query 127629 GCGATCGATAAACTCGTTACCACCATAGTATC 127660 || ||||| || ||||| || || |||| Sbjct 291828 CTCGTCAATAAATTCATTACCTCCGTAATATC 291797 >seq59 Length=1145648 Score = 205 bits (226), Expect = 1e-47 Identities = 622/944 (66%), Gaps = 19/944 (2%) Strand=Plus/Minus Query 96443 CTATTTTGCATACAAGACGCTAGAGCGTACCTATCTGATAAAGCTGGCCGACGGTAAGAT 96502 |||||| | | ||| || || |||||| ||||| || | ||| | | | |||||||| Sbjct 142565 CTATTTCGGCTTCAAAACACTGGAGCGTTCCTATTTGCTGAAGAT---CAAGGGTAAGAT 142509 Query 96503 TTGTGAACGAGTGCAGCACATGTACATGAGGACCGCGCTCGGTATTCACGGTCGGGATAT 96562 | || ||| ||| |||||| ||| | || |||||||||||||| || || Sbjct 142508 TGTGGAGCGACCGCAACACATGCTGATGCGCGTTGCCATCGGTATTCACGGTGAAGACAT 142449 Query 96563 TGAATCGGTAATCGAAACGTACAATCTACTCTCGAACCGCTACTATGTACATTCGACGCC 96622 ||| | | ||||| ||||||||||| || || | ||||||| | ||| | | || Sbjct 142448 TGATGCTGCCATCGAGACGTACAATCTGCTTTCCGAGCGCTACTTTACCCATGCCTCACC 142389 Query 96623 TACTCTGTGTCATGCGGCAACGAATCGTTC-CAACTATGCCTCTTGCTATCTGCT--CGA 96679 || ||| | || || ||| | ||| | || || | | ||||||| |||||| | | Sbjct 142388 GACCATGTTTGCGGCCGCTACGCAGCGTCCGCAGCTTT-CGTCTTGCTTTCTGCTTACCA 142330 Query 96680 ACTCAAAGAGGACAGCATCGGTGGCGTTATGGACACGCTAAAGGACGCGGCCACC-ATTT 96738 || || ||||| || | || || || ||||||||| | | | ||| |||| Sbjct 142329 TGTCG--GACGACAGTATTGAGGGTATTTACGATACGCTAAAGCA-GTGTGCACTGATTT 142273 Query 96739 CAAAACACTGTGGCGGTGTAGGTTTGCATGTGCACAAGTTGCGCTGTAAA--AACTCTAC 96796 | ||| |||||| | || || | |||||| | ||| ||| ||| ||| Sbjct 142272 CCAAATCGGCCGGCGGTATCGGGCTGAACGTGCACTGCATTCGCGCCAAAGGAACG-TAC 142214 Query 96797 GATTCATTCAACAAACGGCAACGCCAGTGGCCTAGTGCCAATGCTCAGAATGTACAATGC 96856 || || | || || | | | || | ||||| ||||| | | ||||| Sbjct 142213 ATCTCCGGCA-CGAATGGGATTTCGAACGGGTTGGTGCCGATGCTGCGCGTTTACAACAA 142155 Query 96857 AATGTCACGATACGTTACACAGGGCGGCAATAAACGGCCAGGCGCTATAGCCGTCTACTT 96916 | | | || ||||| ||||| ||||| || ||||| ||||| | ||| ||||| | Sbjct 142154 CACGGCCCGGTACGTGGATCAGGGTGGCAACAAGCGGCCCGGCGCCTTTGCCATCTACCT 142095 Query 96917 GGAACCTTGGCACGCGGACGTTTTTGACTTTATCGAGATGCGCAAAAACTCTGGCTTTGA 96976 ||||| ||||||| ||| | || || ||| | || || |||||| | ||| || Sbjct 142094 CGAACCATGGCACGGGGATATATTCGAGTTTCTGGATCTGAAGAAAAACACCGGCAAGGA 142035 Query 96977 AGAGGCACGAGCCAGGGACTTGTTTTATGCACTCTGGGTGCCAGATTTGTTCATGAAGCG 97036 |||| || ||| | ||| |||| || || || ||| | || ||| |||||||| |||| Sbjct 142034 GGAGGTGCGTGCCCGCGACATGTTCTACGCCCTGTGGATCCCGGATCTGTTCATGCAGCG 141975 Query 97037 CGTCAACGACGGTGGCTAC-TGGAGCCTAATGTGCCCCGACTCGTCACCCGGTCTGTCCG 97095 || | | || | | |||||||| |||||||| || | ||||| || | | Sbjct 141974 TGTGGAGG-CGAACGAAATGTGGAGCCTGATGTGCCCACACGACTGCCCCGGATTGGCTG 141916 Query 97096 ATTGCTGGGGCGAAGAGTTTGAGGCCAAGTACACGGCCTACGAGCAAGAGGGCCGATACG 97155 | |||||||||||||| ||| |||||| | |||||||| ||||| |||| Sbjct 141915 ACACTTGGGGCGAAGAGTTCGAGAAGCTGTACACTGGGTACGAGCAGGAGGGTCGATTTA 141856 Query 97156 TGAGACGAGTCGATGCACGAGAACTGTGGAAGGCCATCGTGACGGCTCAGGTAGAGACTG 97215 | | | || | |||| || || ||| |||||| | | ||||| || || | Sbjct 141855 TACGCCAGGTGAAGGCACAGGACCTATGGTTTGCCATCATCGAATCGCAGGTGGAAACGG 141796 Query 97216 GAACTCCGTACATTCTCTACAAGGATACCGTG-AATCGCAACAGCAACCAACGCCACTTG 97274 | ||||||||| || ||||||||| | ||| || ||||| ||||| || | || | Sbjct 141795 GCGTTCCGTACATGCTGTACAAGGATGC-GTGCAACCGCAAGAGCAATCAGCAGAACATC 141737 Query 97275 GGCACCATCAAGGGCTCCAATCTGTGCACGGAAATTGTAGAGTACGCCTCTCCGGACGAG 97334 |||||||| ||| | ||||||||||| || || || || |||||| | || ||| || Sbjct 141736 GGCACCATAAAGTGTTCCAATCTGTGTACCGAGATAGTGGAGTACTCGTCGAAGGATGAA 141677 Query 97335 ACGGCAGTTTGCGTTCTGGCATCGGTCAATCTGCCCAAGTTTGT 97378 | || || ||| | |||| ||| || ||| || |||||| Sbjct 141676 ATAGCGGTGTGCAATTTGGCCTCGATCGCGCTGAACATGTTTGT 141633 Score = 152 bits (168), Expect = 8e-32 Identities = 318/471 (68%), Gaps = 2/471 (0%) Strand=Plus/Minus Query 97792 TGCTGGTGGCACCGATGCCCACGGCTACCACTTCCCAAGTGTTTGGCAATGCTGAATCTT 97851 ||||| ||||||||||||| || ||| | || | ||| | || || || || || | Sbjct 141207 TGCTGTTGGCACCGATGCCTACCGCTTCGACGGCACAAATCTTGGGTAACAACGAGTCCT 141148 Query 97852 TTGAACCGTTCACGTCAAACATGTACCAGAGACGCACCCAGTCTGGAGAGTTTCAATTGA 97911 | ||||||| |||||| ||| | ||| | | || | || || |||||||| || Sbjct 141147 TCGAACCGTACACGTCCAACGTTTACAATCGGCGTGTACTTTCCGGCGAGTTTCAGGTGG 141088 Query 97912 CCAACGTGCACTTGGTTCGAGACTTGGAACGGCTCAATCTGTGGAACGATGACATGGCCC 97971 ||| || || | | ||| ||| | | | ||||||| | |||||| Sbjct 141087 TGAACCACCATCTGCTGCAAGATTTGACAGCGATGGGTCTGTGGGATCTAGACATGAAGA 141028 Query 97972 AGTTGATCATGTACAACAATGGGTCCATTCAAAACATTACCATC-ATCCCGGAAGAGTTG 98030 | || ||| |||||| || || ||||||| ||| ||| || ||| | || | Sbjct 141027 ACCAAATTCTGTCCAACAACGGATCGATTCAAAGCATCGA-ATCGATACCGAAGGAAATA 140969 Query 98031 CGCAGAATCTACAAGACTGTCTGGGAGATTCCGACCAAGACGCTGATCGATATGGCTGCC 98090 ||| | ||||| || || ||||||||| || || ||| || | |||||||| Sbjct 140968 CGCGATCTGTACAAAACGGTGTGGGAGATTTCGGTTAAAACGTGCATTAAGATGGCTGCT 140909 Query 98091 GACAGAGGTGTCTACATTGACCAGAGTCAATCGTTCAATCTGTACGTTGCCGAGCCCACC 98150 ||| | |||| | || || ||| ||||||||||| | |||| ||||| || | | Sbjct 140908 GACCGGGGTGCGTTTATCGATCAGTCGCAATCGTTCAACATACACGTGGCCGAACCGAAC 140849 Query 98151 TACAGTCGTATGACTTCGATACACTTTTACGCATGGAACAAGGGCCTCAAGACGGGCATG 98210 || | |||| ||||| |||||||||| ||||| | ||| || || ||||||||| Sbjct 140848 TATGGCAAGCTGACATCGATCCACTTTTACGGCTGGAAAATGGGACTGAAAACGGGCATG 140789 Query 98211 TACTATCTGAGAACAAAGTCGGCCACCAATGCCATACCATTTACGGTGGAC 98261 ||||||||| ||||||| ||||| ||||| || | |||||||||||| Sbjct 140788 TACTATCTGCGAACAAAACCGGCCGTAAATGCGATCCAGTTTACGGTGGAC 140738 >seq14 Length=2766867 Score = 158 bits (174), Expect = 2e-33 Identities = 390/586 (67%), Gaps = 12/586 (2%) Strand=Plus/Minus Query 49794 TTACCGTGGAGCCTCCCATGTTTCTATACATGATGGCCTTCATGACGACCACGGTCATCG 49853 || |||| || || | ||||| || ||||||||||| |||||| ||| | || ||| Sbjct 697330 TTTCCGTCGAACCATCGATGTTCCTGTACATGATGGCGTTCATGCTGACGTCCGTTGTCG 697271 Query 49854 AGCAGGCGTTTTACGTGTACCAAGCGTGCACCGTCAACCATGGCTACTCGCCAGAGGTGT 49913 ||||||| || | | ||| ||||||| || ||| | ||||| || |||| ||| | | Sbjct 697270 AGCAGGCATTCTTTCTCTACAAAGCGTGTACGGTCGATCATGGATATTCGCACGAGATAT 697211 Query 49914 GCCACAACATTAGCCAGTACGATGACATCAACAACCGAGTCCAGCAGACTGTGTCTACAT 49973 | | |||||| ||||| | |||||||| || | || ||| || ||| || | Sbjct 697210 GTCTCAACATCGAACAGTATCAGGACATCAAGAAGCAGGTGCAGGTCACAACGTCCACCT 697151 Query 49974 TTCATCAGTGGAACGGTGTAGCCAGTCATGTGGTGCCCTTTATATTGGCCTTTTTCCTAG 50033 | || ||||||||| | || | | ||||||||| | ||| |||| | || || | Sbjct 697150 TCCACCAGTGGAACAACATCGCTATGTACGTGGTGCCCATCATACTGGCACTATTTCTCG 697091 Query 50034 GATCCTATAGT--GATAGGCGCGGTAGAAAGATTGTACTCGTATGTGGACTCGTAGGTAA 50091 | | || | || || ||||| || | ||| | ||| | || || | ||||| Sbjct 697090 G-TGCT-TGGTCGGACAGGCGAGGCCGCAAGCTACCACTAATTCTGGGCCTTATCGGTAA 697033 Query 50092 ACTCTTTTTCTCGGCAATGCTAACCGTAAACAGTCTCAAG---AGCTGGCCCGTAGAGTA 50148 | || | | |||| ||| | |||||||| | || | |||||| || || || Sbjct 697032 ATTCATCTACTCGATCATGATCGTCGTAAACACGCGCATGCCTTCCTGGCCGGTGGAATA 696973 Query 50149 TATAATCTACACGGCATCCTTTCCGAGTGCACTCACCGGAGCCGATTTGACCATATTCGC 50208 || |||||||||||| | | || |||| ||| ||||| || || | | || || || Sbjct 696972 CATCATCTACACGGCAACGATCCCAAGTGTACTGACCGGCGCTGACATCGCGATCTTTGC 696913 Query 50209 AGCGTGCTTTGCCTACATTGCCGATGTGTCGACTGTGGAGAATCGCACGCTACGAGTGGG 50268 | |||||||| |||||| | || | |||| ||||| | || ||||| || | Sbjct 696912 GTCCTGCTTTGCGTACATTTCGGACATTACGACGGTGGAAGAACGAACGCTGCGCATTAC 696853 Query 50269 CATCTTGGATGCCGTCTACCTGAGCACGATGCCAACCGGTGTGGCGATCGGTAGTGTGCT 50328 || |||| || ||||| ||||||||||| | ||| || || | |||| |||| | Sbjct 696852 GATACTGGACGCTACTTACCTCAGCACGATGCCGATCGGGGTTGCCCTTGGTAATGTGAT 696793 Query 50329 GTGGAAGCGATTCCG----ATCCTACCCCATCATGTTTGCAATCAA 50370 | || | || | | ||| ||| | |||||||| || ||||| Sbjct 696792 CTTTAA-CCATACGGGAAAATCGTACACGATCATGTTCGCGATCAA 696748 >seq24 Length=2206587 Score = 136 bits (150), Expect = 6e-27 Identities = 200/282 (71%), Gaps = 11/282 (4%) Strand=Plus/Minus Query 125038 AGGCTCAGGCCTCCTTTTGGACGGTCGAAGAGGTCGATCTGTCCAAGGACCTGTACGATT 125097 ||||| | || || || ||||| || |||||||| || || || |||||| || | || | Sbjct 1948190 AGGCTGAAGCATCGTTCTGGACCGTGGAAGAGGTAGACCTATCGAAGGACATGAAGGACT 1948131 Query 125098 GGGAGACTCGTTTGACTGAAACTGAGCGAGAGT----TTATATCGCACATTTTGGCCTTC 125153 |||| |||| || |||| |||||| || |||| |||||| | |||||||| Sbjct 1948130 GGGA--CTCG-----CTAAAACCGAGCGAACGTCATTTTATCTCGCACGTGCTGGCCTTC 1948078 Query 125154 TTTGCCGGCTCCGATGGAATCGTCAACGACAATCTGTTGACACGATTCTCTCAAGAGTTG 125213 ||||||| ||||| || ||||| ||||| |||||| | ||| ||| || ||| || Sbjct 1948077 TTTGCCGCGTCCGACGGTATCGTGAACGAGAATCTGGTCGAACGGTTCAGCCAGGAGGTG 1948018 Query 125214 ACCATTCCAGAGGTGTCGTGCTTTTACGGATTCCAAATCATGATTGAGAACGTGCACTCG 125273 | | |||| | ||||| ||||| ||||| || ||| |||||||| ||| Sbjct 1948017 CAGGTAACGGAGGCGCGCTGCTTCTACGGCTTCCAGATTGCGATGGAGAACGTCCACAGT 1947958 Query 125274 GAAATGTACTCTACACTGATTGACATGTACATTCGCGATCCG 125315 || |||||||| ||||| |||| |||||| || ||| || Sbjct 1947957 GAGATGTACTCGCTGCTGATCGACACGTACATCCGTGATTCG 1947916 Score = 134 bits (148), Expect = 2e-26 Identities = 237/343 (69%), Gaps = 13/343 (4%) Strand=Plus/Minus Query 125428 TGGTGGCATTCGCCGCCGTAGAGGGCATCTTCTTTTCGGGTAGTTTTGCGGCCATCTTTT 125487 |||| ||||| || ||||| ||||| |||||||| || || |||||| ||||||| | Sbjct 1947718 TGGTCGCATTTGCTGCCGTCGAGGGTATCTTCTTCAGCGGCAGCTTTGCGTCCATCTTCT 1947659 Query 125488 GGCTCAAGAAGCGCGGACTCATGCCCGGACTGACGCACAGTAACGAGTTTATATCTCGAG 125547 ||||||||||||| || || ||||| || || || | |||||| | || || | | Sbjct 1947658 GGCTCAAGAAGCGTGGCCTTATGCCGGGTCTTACCTTCTCGAACGAGCTGATTTCGAGGG 1947599 Query 125548 ACGAGGGCCTACACTGTGACTTTGCCATTCTACTGTTTCGCAACTATCTGCGTCCCGAGT 125607 ||||||| | || ||||| || ||| || |||| ||| |||||| || Sbjct 1947598 ACGAGGGATTGCATTGTGATTTCGCCTGCCTGATGTT---CAAGTATCTG--------GT 1947550 Query 125608 GCAG-ATCCAGCGATGAAAAG-GTCATCAACATTGTAACCGATGCCGTGAGGATAGAACA 125665 |||| | || ||| | | | || | | || | |||||| || ||| || || Sbjct 1947549 GCAGAAGCCTTCGAAGGAGCGCGTGACGGAGATCATCCGCGATGCGGTAGTGATCGAGCA 1947490 Query 125666 AGAGTTTCTAACCGAATCCCTACCGGTCAGCATGATTGGCATGAACTGCAAGCTAATGTG 125725 ||| ||| | || || |||| |||||| ||| | |||||||| || | || |||| Sbjct 1947489 AGAATTTTTGACGAAAGCCCTGCCGGTCGATATGCTCGGCATGAATTGTGATCTGATGTC 1947430 Query 125726 CGAGTACATAGAGTTTGTGGCAGATCGTCTACTGTACGAGTTG 125768 ||||||| ||||||||||| |||||| | ||| |||||| Sbjct 1947429 GCAGTACATTGAGTTTGTGGCGGATCGTTTGCTGCTGGAGTTG 1947387 >seq66 Length=971934 Score = 107 bits (118), Expect = 3e-18 Identities = 231/341 (68%), Gaps = 6/341 (2%) Strand=Plus/Plus Query 70076 GGGCCAGTGTACGGATTCCAGTGGAGGCACTCGGGCACCAAGTATGTAGACTGCGA-GAC 70134 || || || ||||| ||||||||| | |||| || | ||| | ||| | ||| Sbjct 653786 GGACCGGTTTACGGTTTCCAGTGGCGCCACTTTGGTGCAGCGTACAAAACATGCCACGAC 653845 Query 70135 AGACTATTCGGGTCAGGGTGTTGATCAATTGCAGACAATCATTGACACTCTCAAGACCAA 70194 || || | || ||||| | ||||| ||| | | || ||||| |||||| ||| Sbjct 653846 -GATTACACAGGGCAGGGAATCGATCAGTTGGCAAAGGTGATCGACACGATCAAGAACAA 653904 Query 70195 TCCAACAGATAGGAGGATCGTAATGTGCTCATGGAATCCTGCAGATTTGCACCAAATGGC 70254 ||| ||| | | ||| | ||| || | ||||||||| | || | | | ||||| Sbjct 653905 TCCGTACGATCGTCGTATCATTATGAGCGCTTGGAATCCTTCCGACATTCCCATCATGGC 653964 Query 70255 ACTACCACCGTGTCACTGTTTGGCTCAGTTTTACTCGT--ACGATGGCAAATTGTCATGC 70312 | | |||||||||||||||||||| ||||||| |||| ||||| || | || ||| Sbjct 653965 ATTGCCACCGTGTCACTGTTTGGCACAGTTTT--TCGTTGCTGATGGAGAACTCTCCTGC 654022 Query 70313 TTAATGTATCAGAGGAGTGCCGACATGGGCCTCGGTGTACCCTTTAACATTGCAAGCTAT 70372 ||||||||| | ||||| | || | || || || || ||||| || |||||| Sbjct 654023 CAGATGTATCAGCGATCGGCCGATGTTGGATTGGGCGTGCCGTTCAACATCGCTAGCTAT 654082 Query 70373 TCTATGTTGACGCACATGATTGCTCACATTACCGGCCTGAA 70413 || || |||| || ||||| || || | || || ||||| Sbjct 654083 TCACTGCTGACCCATATGATCGCGCATGTCACTGGACTGAA 654123 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 740842708817960