Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Anopheles_20stephensi_20[genbank_20GCA_5F000300775.2_202013-07-19] 23,371 sequences; 221,324,304 total letters Query= NC_005179.1 Length=134721 Score E Sequences producing significant alignments: (Bits) Value seq24 93.3 4e-14 >seq24 Length=2206587 Score = 93.3 bits (102), Expect = 4e-14 Identities = 269/411 (65%), Gaps = 6/411 (1%) Strand=Plus/Plus Query 12961 ACACCCTAATTCTAGTAACAATCTGTCAGCAACAAACTCTATGTACTGTTTCATTAAATC 13020 ||| || || || || | ||| | || || |||||||| |||||||| ||| | ||| Sbjct 1947381 ACAGCCCAACTCCAGCAGCAAACGATCCGCCACAAACTCAATGTACTGCGACATCAGATC 1947440 Query 13021 ACAGTTCATTCCTATTAATTTTACAGGCATAGCTTCTGTTAAAAAGtttttttCTATATC 13080 ||| ||||| || | | | || |||| |||| || ||||| | || || || | Sbjct 1947441 ACAATTCATGCCGAGCATATCGACCGGCAGGGCTTTCGTCAAAAATTCTTGCTCGATCAC 1947500 Query 13081 AACTGCTTCGATAACTATGTCTCTTATTACGTTCTCTAATGGAGGATT-TGAT--AGATG 13137 || || ||| | || || | | || ||| | ||| || || |||| Sbjct 1947501 TACCGCATCGCGGATGATCTCCGTCA---CGCGCTCCTTCGAAGGCTTCTGCACCAGATA 1947557 Query 13138 CTTAAACATCATACATGCAAAATCACAGTGCAATCCTTCATCTCTACTTATTAGCTCGTT 13197 ||| ||||||| || || |||||||| |||||||| || || || || |||||||| Sbjct 1947558 CTTGAACATCAGGCAGGCGAAATCACAATGCAATCCCTCGTCCCTCGAAATCAGCTCGTT 1947617 Query 13198 TGAAAATGTTAGACCCGGCATAAGCCCTCGTTTTTTAATCCAAAATATAGCAGCAAACGA 13257 || || || |||||||||||||| || || || || | ||| || || | ||||| Sbjct 1947618 CGAGAAGGTAAGACCCGGCATAAGGCCACGCTTCTTGAGCCAGAAGATGGACGCAAAGCT 1947677 Query 13258 ACCCGaaaaaaaTATTCCTTCAACTGCTGCAAACGCTATCAACCTTTCACCATACGTACT 13317 || || || || || || || || ||||| || | || | || ||| | || Sbjct 1947678 GCCGCTGAAGAAGATACCCTCGACGGCAGCAAATGCGACCACACGCTCGCCAAAGTTAGC 1947737 Query 13318 ATTTTTACTCTCTATCCACTTTCTGGCCCAGTTTGCTTTTTGTTTAACGCA 13368 || || ||| ||||| || ||||||| ||| || | || ||||| Sbjct 1947738 CTTCTTGCTCGAGATCCAGTTAAGCGCCCAGTCTGCCTTCTTCTTCACGCA 1947788 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 430859641532142