Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Anopheles_20stephensi_20[genbank_20GCA_5F000300775.2_202013-07-19] 23,371 sequences; 221,324,304 total letters Query= NC_005309.1 Length=359853 Score E Sequences producing significant alignments: (Bits) Value seq1 140 7e-28 seq68 120 7e-22 >seq1 Length=5975090 Score = 140 bits (154), Expect = 7e-28 Identities = 161/217 (74%), Gaps = 0/217 (0%) Strand=Plus/Minus Query 104347 AAGTACTAGATGTAATGTAGATTCTTTCTGAATATTATAGTCAGATAGAGTTCTACCGTC 104406 ||| || ||||| | || ||||| ||||| || |||||||| || || || | || || Sbjct 5042918 AAGGACCAGATGGAGGGTGGATTCCTTCTGGATGTTATAGTCCGACAGGGTGCGGCCATC 5042859 Query 104407 TTCTAGTTGTTTTCCAGCAAAAATTAGCCTCTGTTGATCAGGAGGTATTCCTTCTTTATC 104466 ||| || || || |||||||| || || | ||| ||||| || || ||||| || || || Sbjct 5042858 TTCCAGCTGCTTACCAGCAAAGATCAGACGCTGCTGATCTGGCGGGATTCCCTCCTTGTC 5042799 Query 104467 CTGAATCTTTGCTTTTACATTTTCTACGGTATCGCTAGGTTCTACCTCTAGTGTAATAGT 104526 ||||||||| || || ||||| || | ||| ||| || || ||||| || || ||||| Sbjct 5042798 CTGAATCTTGGCCTTCACATTCTCGATGGTGTCGGATGGCTCAACCTCAAGGGTGATAGT 5042739 Query 104527 CTTACCAGTAAGTGTTTTTACAAATATCTGCATTTTG 104563 ||| || || || || || || || || ||||| ||| Sbjct 5042738 CTTTCCGGTCAGAGTCTTGACGAAGATTTGCATGTTG 5042702 Score = 136 bits (150), Expect = 9e-27 Identities = 158/213 (74%), Gaps = 0/213 (0%) Strand=Plus/Minus Query 104347 AAGTACTAGATGTAATGTAGATTCTTTCTGAATATTATAGTCAGATAGAGTTCTACCGTC 104406 ||| || ||||| | || ||||| ||||| || |||||||| || || || | || || Sbjct 5043374 AAGGACCAGATGGAGGGTGGATTCCTTCTGGATGTTATAGTCCGACAGGGTGCGGCCATC 5043315 Query 104407 TTCTAGTTGTTTTCCAGCAAAAATTAGCCTCTGTTGATCAGGAGGTATTCCTTCTTTATC 104466 ||| || || || |||||||| || || | ||| ||||| || || ||||| || || || Sbjct 5043314 TTCCAGCTGCTTGCCAGCAAAGATCAGACGCTGCTGATCTGGCGGGATTCCCTCCTTGTC 5043255 Query 104467 CTGAATCTTTGCTTTTACATTTTCTACGGTATCGCTAGGTTCTACCTCTAGTGTAATAGT 104526 ||||||||| || || ||||| || | ||| ||| || || ||||| || || || || Sbjct 5043254 CTGAATCTTGGCCTTCACATTCTCGATGGTGTCGGATGGCTCAACCTCGAGGGTGATGGT 5043195 Query 104527 CTTACCAGTAAGTGTTTTTACAAATATCTGCAT 104559 ||| || || || || || || || |||||||| Sbjct 5043194 CTTTCCGGTCAGAGTCTTGACGAAGATCTGCAT 5043162 Score = 132 bits (146), Expect = 1e-25 Identities = 157/213 (74%), Gaps = 0/213 (0%) Strand=Plus/Minus Query 104347 AAGTACTAGATGTAATGTAGATTCTTTCTGAATATTATAGTCAGATAGAGTTCTACCGTC 104406 ||| || ||||| | || ||||| ||||| || |||||||| || || || | || || Sbjct 5043146 AAGGACCAGATGGAGGGTGGATTCCTTCTGGATGTTATAGTCCGACAGGGTGCGGCCATC 5043087 Query 104407 TTCTAGTTGTTTTCCAGCAAAAATTAGCCTCTGTTGATCAGGAGGTATTCCTTCTTTATC 104466 ||| || || || || ||||| || || | ||| ||||| || || ||||| || || || Sbjct 5043086 TTCCAGCTGCTTGCCGGCAAAGATCAGACGCTGCTGATCTGGCGGGATTCCCTCCTTGTC 5043027 Query 104467 CTGAATCTTTGCTTTTACATTTTCTACGGTATCGCTAGGTTCTACCTCTAGTGTAATAGT 104526 ||||||||| || || ||||| || | ||| ||| || || ||||| || || || || Sbjct 5043026 CTGAATCTTGGCCTTCACATTCTCGATGGTGTCGGATGGCTCAACCTCGAGGGTGATGGT 5042967 Query 104527 CTTACCAGTAAGTGTTTTTACAAATATCTGCAT 104559 ||| || || || || || || || |||||||| Sbjct 5042966 CTTTCCGGTCAGAGTCTTGACGAAGATCTGCAT 5042934 >seq68 Length=961948 Score = 120 bits (132), Expect = 7e-22 Identities = 217/315 (69%), Gaps = 2/315 (1%) Strand=Plus/Minus Query 238572 GCCGAAACTCACGATCCCCTATGGAATTCCGCCCAGATACAAATGGTAAGACTAGGCAAA 238631 ||| |||| ||||| || ||||| | |||||| | || ||||| | ||||| Sbjct 663603 GCCAAAACGCACGACGATCTGTGGAACGCGGCCCAGCTGCAGATGGTGAAGGAGGGCAAG 663544 Query 238632 ATGCATAGTTTCTTACGAATGTATTGGGCTAAAAAGATACTTGAATGGACTAGATCTCCA 238691 |||||| | || | || ||||||||||| || |||||||| || ||||| | | | || Sbjct 663543 ATGCATGGCTTTCTGCGGATGTATTGGGCGAAGAAGATACTGGAGTGGACGAAAACGCCC 663484 Query 238692 AAGGAAGCTCTTAGATATAG-TATTTATCTGAACGATAAATACGAACTCGACGGTACGGA 238750 ||||||| | | || | | || ||||||||||| ||| || || || || Sbjct 663483 GAGGAAGCGC-TCGAAACGGCCATCTATCTGAACGACCGGTACAGTCTGGATGGGCGCGA 663425 Query 238751 TCCTAACGGATACGTAGGTTGTATGTGGTCAATATGTGGATTACACGATAGGGCATGGTC 238810 ||| ||||| ||||| || ||||||||||| || || |||||||| || ||| Sbjct 663424 TCCGAACGGGTACGTCGGCTGTATGTGGTCGATCGCAGGCATACACGATCAGGGTTGGAA 663365 Query 238811 TGAGAGACCTATATTTGGAAAAGTTAGATACATGAATTATGAAGGAACTAAGAAAAAATT 238870 ||| | | || ||||| || || | |||||||| ||||| ||| ||| ||||| Sbjct 663364 GGAGCGTGCGATTTTTGGCAAGATTCGGTACATGAACTATGAGGGATGCAAGCGCAAATT 663305 Query 238871 TGATGTAAATGCTTT 238885 | | || ||||| || Sbjct 663304 TAACGTCAATGCGTT 663290 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1151053624183668