Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Anopheles_20stephensi_20[genbank_20GCA_5F000300775.2_202013-07-19] 23,371 sequences; 221,324,304 total letters Query= NC_005337.1 Length=134431 Score E Sequences producing significant alignments: (Bits) Value seq65 143 2e-29 >seq65 Length=973771 Score = 143 bits (158), Expect = 2e-29 Identities = 234/337 (69%), Gaps = 0/337 (0%) Strand=Plus/Plus Query 5503 GCCCGTGGACCCGAATCCGCCTGCGCCTCTTTCCGTATCGTCCAGGCACGCCACCTCTTC 5562 ||| || || ||||| || || || || | ||||| || || ||| | |||||| Sbjct 654935 GCCGGTCGATCCGAAACCTCCCGCACCGCGCTCCGTGTCCGTTAGCGACGGAAGCTCTTC 654994 Query 5563 CACATCGGGGAACGCAGCGCGCTCGCAGATCAGCTGCGCTATTCGGTCGCCCGTCTTTAC 5622 || || || | ||| |||||| || | ||| || || || |||||| |||| || Sbjct 654995 CAGGTCAGGATAGGCAATCTTCTCGCAAATAAACTGTGCGATACGATCGCCCTTCTTCAC 655054 Query 5623 CTCGAAATCGTTGTGGCCGAAGTTGAACAGCACCACGCCCACGTTGCCGCGGTAGTCGGC 5682 |||||||| | || ||||||||||| ||||| || |||||||||||||| | Sbjct 655055 TTCGAAATCCGCCTCAGCGTGATTGAACAGCACGACGCCAACATTGCCGCGGTAGTCCTC 655114 Query 5683 GTCTATCACGCCCGCGCCCACGTCGATGAAGTGCTTGACCGCCAGGCCGGAGCGGGGAGC 5742 || | ||||| || || ||||||||||| | || || |||| ||||| || ||||| Sbjct 655115 ATCGACGACGCCGGCTCCAACGTCGATGAAATTTTTCACGGCCAACCCGGAACGTGGAGC 655174 Query 5743 CACGCGGCCGTAGCACCCATCGGGAAGCTGTATCTGCAGGTCCGTGAACACCACTCGCCG 5802 || || |||||||| || ||||| | ||| | ||| | ||| || | ||||| | | Sbjct 655175 TACCCGTCCGTAGCATCCTTCGGGCACCTGCACCTGGATGTCGGTCATCACCAGTTGTTT 655234 Query 5803 ACCGCCCGCAGGGACGATGCAGTCGCAAGCGCTGCAG 5839 || | | |||||| | ||||| | |||||| || Sbjct 655235 GCCACGGCCGGGGACGGTATAGTCGTACGCGCTGAAG 655271 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 429931905858152