Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Anopheles_20stephensi_20[genbank_20GCA_5F000300775.2_202013-07-19]
23,371 sequences; 221,324,304 total letters
Query= NC_005906.1
Length=81755
Score E
Sequences producing significant alignments: (Bits) Value
seq1 93.3 2e-14
seq3 89.7 3e-13
seq25 86.0 3e-12
>seq1
Length=5975090
Score = 93.3 bits (102), Expect = 2e-14
Identities = 80/99 (81%), Gaps = 3/99 (3%)
Strand=Plus/Plus
Query 11435 AGAATTAATAAAAAATCAA---ATTGGCCCATGAAAGGATCGAACCTTCGACCTTCGCGT 11491
|||| ||||||||| || |||||| | || |||||||||| ||||||||||||
Sbjct 4246317 AGAAGAAATAAAAAAAGAATTGATTGGCTCCAGAGAGGATCGAACTCACGACCTTCGCGT 4246376
Query 11492 TATTAGCACGACGCTCTRACCAACTGAGCTAATGGGCCG 11530
||||||||||||||||| |||| |||||||| | ||||
Sbjct 4246377 TATTAGCACGACGCTCTAACCAGCTGAGCTATGGAGCCG 4246415
Score = 84.2 bits (92), Expect = 1e-11
Identities = 59/68 (87%), Gaps = 0/68 (0%)
Strand=Plus/Minus
Query 11455 TTGGCCCATGAAAGGATCGAACCTTCGACCTTCGCGTTATTAGCACGACGCTCTRACCAA 11514
||||| | || |||||||||| ||||||||||||||||||||||||||||| ||||
Sbjct 4306305 TTGGCTCCAGAGAGGATCGAACTCACGACCTTCGCGTTATTAGCACGACGCTCTAACCAG 4306246
Query 11515 CTGAGCTA 11522
||||||||
Sbjct 4306245 CTGAGCTA 4306238
Score = 82.4 bits (90), Expect = 4e-11
Identities = 59/69 (86%), Gaps = 0/69 (0%)
Strand=Plus/Minus
Query 11454 ATTGGCCCATGAAAGGATCGAACCTTCGACCTTCGCGTTATTAGCACGACGCTCTRACCA 11513
|||||| | || |||||||||| ||||||||||||||||||||||||||||| ||||
Sbjct 4304561 ATTGGCTCCAGAGAGGATCGAACTCACGACCTTCGCGTTATTAGCACGACGCTCTAACCA 4304502
Query 11514 ACTGAGCTA 11522
|| |||||
Sbjct 4304501 GCTCAGCTA 4304493
>seq3
Length=5630514
Score = 89.7 bits (98), Expect = 3e-13
Identities = 60/68 (88%), Gaps = 0/68 (0%)
Strand=Plus/Plus
Query 11455 TTGGCCCATGAAAGGATCGAACCTTCGACCTTCGCGTTATTAGCACGACGCTCTRACCAA 11514
||||| | || |||||||||| ||||||||||||||||||||||||||||| |||||
Sbjct 4922439 TTGGCTCCAGAGAGGATCGAACTCACGACCTTCGCGTTATTAGCACGACGCTCTAACCAA 4922498
Query 11515 CTGAGCTA 11522
||||||||
Sbjct 4922499 CTGAGCTA 4922506
Score = 87.8 bits (96), Expect = 9e-13
Identities = 59/67 (88%), Gaps = 0/67 (0%)
Strand=Plus/Plus
Query 11456 TGGCCCATGAAAGGATCGAACCTTCGACCTTCGCGTTATTAGCACGACGCTCTRACCAAC 11515
|||| | || |||||||||| ||||||||||||||||||||||||||||| ||||||
Sbjct 4923326 TGGCTCCAGAGAGGATCGAACTCACGACCTTCGCGTTATTAGCACGACGCTCTAACCAAC 4923385
Query 11516 TGAGCTA 11522
|||||||
Sbjct 4923386 TGAGCTA 4923392
Score = 84.2 bits (92), Expect = 1e-11
Identities = 63/75 (84%), Gaps = 0/75 (0%)
Strand=Plus/Minus
Query 11456 TGGCCCATGAAAGGATCGAACCTTCGACCTTCGCGTTATTAGCACGACGCTCTRACCAAC 11515
|||| | || |||||||||| ||||||||||||||||||||||||||||| |||| |
Sbjct 4877682 TGGCTCCAGAGAGGATCGAACTCACGACCTTCGCGTTATTAGCACGACGCTCTAACCAGC 4877623
Query 11516 TGAGCTAATGGGCCG 11530
||||||| | ||||
Sbjct 4877622 TGAGCTATGGAGCCG 4877608
Score = 84.2 bits (92), Expect = 1e-11
Identities = 59/68 (87%), Gaps = 0/68 (0%)
Strand=Plus/Minus
Query 11455 TTGGCCCATGAAAGGATCGAACCTTCGACCTTCGCGTTATTAGCACGACGCTCTRACCAA 11514
||||| | || |||||||||| ||||||||||||||||||||||||||||| ||||
Sbjct 4878507 TTGGCTCCAGAGAGGATCGAACTCACGACCTTCGCGTTATTAGCACGACGCTCTAACCAG 4878448
Query 11515 CTGAGCTA 11522
||||||||
Sbjct 4878447 CTGAGCTA 4878440
Score = 84.2 bits (92), Expect = 1e-11
Identities = 59/68 (87%), Gaps = 0/68 (0%)
Strand=Plus/Plus
Query 11455 TTGGCCCATGAAAGGATCGAACCTTCGACCTTCGCGTTATTAGCACGACGCTCTRACCAA 11514
||||| | || |||||||||| ||||||||||||||||||||||||||||| ||||
Sbjct 4924535 TTGGCTCCAGAGAGGATCGAACTCACGACCTTCGCGTTATTAGCACGACGCTCTAACCAG 4924594
Query 11515 CTGAGCTA 11522
||||||||
Sbjct 4924595 CTGAGCTA 4924602
Score = 84.2 bits (92), Expect = 1e-11
Identities = 63/75 (84%), Gaps = 0/75 (0%)
Strand=Plus/Plus
Query 11456 TGGCCCATGAAAGGATCGAACCTTCGACCTTCGCGTTATTAGCACGACGCTCTRACCAAC 11515
|||| | || |||||||||| ||||||||||||||||||||||||||||| |||| |
Sbjct 4925335 TGGCTCCAGAGAGGATCGAACTCACGACCTTCGCGTTATTAGCACGACGCTCTAACCAGC 4925394
Query 11516 TGAGCTAATGGGCCG 11530
||||||| | ||||
Sbjct 4925395 TGAGCTATGGAGCCG 4925409
Score = 82.4 bits (90), Expect = 4e-11
Identities = 58/67 (87%), Gaps = 0/67 (0%)
Strand=Plus/Plus
Query 11456 TGGCCCATGAAAGGATCGAACCTTCGACCTTCGCGTTATTAGCACGACGCTCTRACCAAC 11515
|||| | || |||||||||| ||||||||||||||||||||||||||||| |||| |
Sbjct 4921947 TGGCTCCAGAGAGGATCGAACTCACGACCTTCGCGTTATTAGCACGACGCTCTAACCAGC 4922006
Query 11516 TGAGCTA 11522
|||||||
Sbjct 4922007 TGAGCTA 4922013
>seq25
Length=2202290
Score = 86.0 bits (94), Expect = 3e-12
Identities = 64/76 (84%), Gaps = 0/76 (0%)
Strand=Plus/Plus
Query 11455 TTGGCCCATGAAAGGATCGAACCTTCGACCTTCGCGTTATTAGCACGACGCTCTRACCAA 11514
||||| | || |||||||||| ||||||||||||||||||||||||||||| ||||
Sbjct 1153445 TTGGCTCCAGAGAGGATCGAACTCACGACCTTCGCGTTATTAGCACGACGCTCTAACCAG 1153504
Query 11515 CTGAGCTAATGGGCCG 11530
|||||||| | ||||
Sbjct 1153505 CTGAGCTATGGAGCCG 1153520
Lambda K H
0.639 0.410 0.920
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 261416718399196
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |