Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Anopheles_20stephensi_20[genbank_20GCA_5F000300775.2_202013-07-19] 23,371 sequences; 221,324,304 total letters Query= NC_006549.1 Length=140131 Score E Sequences producing significant alignments: (Bits) Value seq20 140 3e-28 seq57 118 1e-21 seq1 107 2e-18 >seq20 Length=2346360 Score = 140 bits (154), Expect = 3e-28 Identities = 169/230 (73%), Gaps = 0/230 (0%) Strand=Plus/Plus Query 94781 CCTCCTCTCAATCGCAACACCAAGTGCAAAGTAGATTCCTTTTGCACGTTATAATCGCTC 94840 ||||| | || || | |||||||||| || || ||||| || | ||| || ||| | Sbjct 834746 CCTCCACGCAGACGGAGGACCAAGTGCAGGGTCGACTCCTTCTGGATGTTGTAGTCGGAC 834805 Query 94841 ATAGTGTTGGAATCCTCCAGCTGTTTTCCGCCAAAGATTAATCTTTGCTGATCTGGAGGA 94900 | ||| |||||||||||| |||||| | ||||| || | ||||||||||||||| Sbjct 834806 AGAGTACGACCATCCTCCAGCTGCTTTCCGGCGAAGATCAAACGCTGCTGATCTGGAGGA 834865 Query 94901 ATACCTTCTTTGTCATAAATTTTTGCCTTGACGGCGCCGACAGTGTCAGCGTGGTCGACG 94960 ||||| || ||||| | || || ||||| ||| ||| ||||| | | ||||| Sbjct 834866 ATACCCTCCTTGTCCTGGATCTTAGCCTTCACGTTCTCGATCGTGTCCGATGGCTCGACC 834925 Query 94961 TCAATCGTGATGGTTTTTCCAGTAAGAGTTTTCACAAAGATCTGCATGCT 95010 || | ||||||||| || ||||| || || ||||| ||||||||||| || Sbjct 834926 TCCAGCGTGATGGTCTTGCCAGTCAGCGTCTTCACGAAGATCTGCATCCT 834975 Score = 138 bits (152), Expect = 1e-27 Identities = 169/229 (74%), Gaps = 4/229 (2%) Strand=Plus/Plus Query 94781 CCTCCTCTCAATCGCAACACCAAGTGCAAAGTAGATTCCTTTTGCACGTTATAATCGCTC 94840 ||||| | || || | |||||||||| || || ||||| || | ||| || ||| | Sbjct 834518 CCTCCACGCAGACGGAGGACCAAGTGCAGGGTCGACTCCTTCTGGATGTTGTAGTCGGAC 834577 Query 94841 ATAGT--GTTGGAATCCTCCAGCTGTTTTCCGCCAAAGATTAATCTTTGCTGATCTGGAG 94898 | ||| || | ||||||||||| |||||| | ||||| || | ||||||||||||| Sbjct 834578 AGAGTACGTCCG--TCCTCCAGCTGCTTTCCGGCGAAGATCAAACGCTGCTGATCTGGAG 834635 Query 94899 GAATACCTTCTTTGTCATAAATTTTTGCCTTGACGGCGCCGACAGTGTCAGCGTGGTCGA 94958 ||||||| || ||||| | || || ||||| ||| ||| ||||| | | |||| Sbjct 834636 GAATACCCTCCTTGTCCTGGATCTTAGCCTTCACGTTCTCGATCGTGTCCGACGGCTCGA 834695 Query 94959 CGTCAATCGTGATGGTTTTTCCAGTAAGAGTTTTCACAAAGATCTGCAT 95007 | || | ||||||||| || ||||| || || ||||| ||||||||||| Sbjct 834696 CCTCCAGCGTGATGGTCTTGCCAGTCAGCGTCTTCACGAAGATCTGCAT 834744 Score = 134 bits (148), Expect = 1e-26 Identities = 155/209 (74%), Gaps = 0/209 (0%) Strand=Plus/Plus Query 94799 ACCAAGTGCAAAGTAGATTCCTTTTGCACGTTATAATCGCTCATAGTGTTGGAATCCTCC 94858 |||||||||| || || ||||| || | ||| || ||| || ||| |||||| Sbjct 834308 ACCAAGTGCAGGGTCGACTCCTTCTGGATGTTGTAGTCGGACAGAGTACGACCGTCCTCC 834367 Query 94859 AGCTGTTTTCCGCCAAAGATTAATCTTTGCTGATCTGGAGGAATACCTTCTTTGTCATAA 94918 ||||| |||||| | ||||| || | |||||||||||||||||||| || ||||| | Sbjct 834368 AGCTGCTTTCCGGCGAAGATCAAACGCTGCTGATCTGGAGGAATACCCTCCTTGTCCTGG 834427 Query 94919 ATTTTTGCCTTGACGGCGCCGACAGTGTCAGCGTGGTCGACGTCAATCGTGATGGTTTTT 94978 || || ||||| ||| ||| ||||| | | ||||| || | ||||||||| || Sbjct 834428 ATCTTAGCCTTCACGTTCTCGATCGTGTCCGACGGCTCGACCTCCAGCGTGATGGTCTTG 834487 Query 94979 CCAGTAAGAGTTTTCACAAAGATCTGCAT 95007 ||||| || || ||||| ||||||||||| Sbjct 834488 CCAGTCAGCGTCTTCACGAAGATCTGCAT 834516 >seq57 Length=1190389 Score = 118 bits (130), Expect = 1e-21 Identities = 158/220 (72%), Gaps = 0/220 (0%) Strand=Plus/Plus Query 94792 TCGCAACACCAAGTGCAAAGTAGATTCCTTTTGCACGTTATAATCGCTCATAGTGTTGGA 94851 ||||| ||||| || | ||||||||||| || | ||| || || || ||| Sbjct 631309 TCGCAGCACCAGATGAAGGGTAGATTCCTTCTGAATGTTGTAGTCCGACAGGGTGCGACC 631368 Query 94852 ATCCTCCAGCTGTTTTCCGCCAAAGATTAATCTTTGCTGATCTGGAGGAATACCTTCTTT 94911 |||||||||||| || ||| | ||||| | | ||||||||||||||||| ||||| || Sbjct 631369 ATCCTCCAGCTGCTTGCCGGCGAAGATGAGACGCTGCTGATCTGGAGGAATTCCTTCCTT 631428 Query 94912 GTCATAAATTTTTGCCTTGACGGCGCCGACAGTGTCAGCGTGGTCGACGTCAATCGTGAT 94971 || | || || ||||| || ||| ||||| | | ||||| |||| ||||| Sbjct 631429 ATCCTGGATCTTGGCCTTCACATTCTCGATCGTGTCCGAAGGCTCGACCTCAAGTGTGAT 631488 Query 94972 GGTTTTTCCAGTAAGAGTTTTCACAAAGATCTGCATGCTT 95011 ||| || || || || |||||||| || ||||||||| || Sbjct 631489 GGTCTTGCCGGTGAGTGTTTTCACGAAAATCTGCATGATT 631528 >seq1 Length=5975090 Score = 107 bits (118), Expect = 2e-18 Identities = 143/199 (72%), Gaps = 0/199 (0%) Strand=Plus/Minus Query 94811 GTAGATTCCTTTTGCACGTTATAATCGCTCATAGTGTTGGAATCCTCCAGCTGTTTTCCG 94870 || |||||||| || | |||||| || || ||| | ||| |||||||| || ||| Sbjct 5043130 GTGGATTCCTTCTGGATGTTATAGTCCGACAGGGTGCGGCCATCTTCCAGCTGCTTGCCG 5043071 Query 94871 CCAAAGATTAATCTTTGCTGATCTGGAGGAATACCTTCTTTGTCATAAATTTTTGCCTTG 94930 ||||||| | | ||||||||||| || || || || ||||| | ||| || ||||| Sbjct 5043070 GCAAAGATCAGACGCTGCTGATCTGGCGGGATTCCCTCCTTGTCCTGAATCTTGGCCTTC 5043011 Query 94931 ACGGCGCCGACAGTGTCAGCGTGGTCGACGTCAATCGTGATGGTTTTTCCAGTAAGAGTT 94990 || ||| ||||| | | || || || | |||||||| ||||| || ||||| Sbjct 5043010 ACATTCTCGATGGTGTCGGATGGCTCAACCTCGAGGGTGATGGTCTTTCCGGTCAGAGTC 5042951 Query 94991 TTCACAAAGATCTGCATGC 95009 || || ||||||||||||| Sbjct 5042950 TTGACGAAGATCTGCATGC 5042932 Score = 102 bits (112), Expect = 7e-17 Identities = 142/199 (71%), Gaps = 0/199 (0%) Strand=Plus/Minus Query 94811 GTAGATTCCTTTTGCACGTTATAATCGCTCATAGTGTTGGAATCCTCCAGCTGTTTTCCG 94870 || |||||||| || | |||||| || || ||| | ||| |||||||| || || Sbjct 5043358 GTGGATTCCTTCTGGATGTTATAGTCCGACAGGGTGCGGCCATCTTCCAGCTGCTTGCCA 5043299 Query 94871 CCAAAGATTAATCTTTGCTGATCTGGAGGAATACCTTCTTTGTCATAAATTTTTGCCTTG 94930 ||||||| | | ||||||||||| || || || || ||||| | ||| || ||||| Sbjct 5043298 GCAAAGATCAGACGCTGCTGATCTGGCGGGATTCCCTCCTTGTCCTGAATCTTGGCCTTC 5043239 Query 94931 ACGGCGCCGACAGTGTCAGCGTGGTCGACGTCAATCGTGATGGTTTTTCCAGTAAGAGTT 94990 || ||| ||||| | | || || || | |||||||| ||||| || ||||| Sbjct 5043238 ACATTCTCGATGGTGTCGGATGGCTCAACCTCGAGGGTGATGGTCTTTCCGGTCAGAGTC 5043179 Query 94991 TTCACAAAGATCTGCATGC 95009 || || ||||||||||||| Sbjct 5043178 TTGACGAAGATCTGCATGC 5043160 Score = 96.9 bits (106), Expect = 3e-15 Identities = 140/198 (71%), Gaps = 0/198 (0%) Strand=Plus/Minus Query 94811 GTAGATTCCTTTTGCACGTTATAATCGCTCATAGTGTTGGAATCCTCCAGCTGTTTTCCG 94870 || |||||||| || | |||||| || || ||| | ||| |||||||| || || Sbjct 5042902 GTGGATTCCTTCTGGATGTTATAGTCCGACAGGGTGCGGCCATCTTCCAGCTGCTTACCA 5042843 Query 94871 CCAAAGATTAATCTTTGCTGATCTGGAGGAATACCTTCTTTGTCATAAATTTTTGCCTTG 94930 ||||||| | | ||||||||||| || || || || ||||| | ||| || ||||| Sbjct 5042842 GCAAAGATCAGACGCTGCTGATCTGGCGGGATTCCCTCCTTGTCCTGAATCTTGGCCTTC 5042783 Query 94931 ACGGCGCCGACAGTGTCAGCGTGGTCGACGTCAATCGTGATGGTTTTTCCAGTAAGAGTT 94990 || ||| ||||| | | || || |||| ||||| || ||||| || ||||| Sbjct 5042782 ACATTCTCGATGGTGTCGGATGGCTCAACCTCAAGGGTGATAGTCTTTCCGGTCAGAGTC 5042723 Query 94991 TTCACAAAGATCTGCATG 95008 || || ||||| |||||| Sbjct 5042722 TTGACGAAGATTTGCATG 5042705 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 448160237329560