Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Anopheles_20stephensi_20[genbank_20GCA_5F000300775.2_202013-07-19] 23,371 sequences; 221,324,304 total letters Query= NC_006639.1 Length=24748 Score E Sequences producing significant alignments: (Bits) Value seq21704 206 4e-49 seq166 206 4e-49 seq178 201 2e-47 seq29 178 2e-40 seq21 170 3e-38 seq7919 129 9e-26 >seq21704 Length=528 Score = 206 bits (228), Expect = 4e-49 Identities = 206/267 (77%), Gaps = 0/267 (0%) Strand=Plus/Minus Query 16433 GCTAAGCGTCATCGCAGATCTCTTCGAGATAACATCCAAGGAATCACCAAGCCAGCTATC 16492 || ||||||||||||| | || || ||||||||||| ||||||||||||||||||||| Sbjct 411 GCCAAGCGTCATCGCAAAGTGCTGCGCGATAACATCCAGGGAATCACCAAGCCAGCTATC 352 Query 16493 CGTCGTCTGGCTCGTCGTGGTGGAGTCAAGCGTGTCTCTGGATTGGTCTATGAAGAGATT 16552 ||||||||||| || ||||| ||||| |||||| ||||||| || | || || || | | Sbjct 351 CGTCGTCTGGCCCGCCGTGGAGGAGTGAAGCGTATCTCTGGCCTGATTTACGAGGAAACT 292 Query 16553 CGTGATGTTTTGAAGATCTTCCTCAAGACCGTTATCCATGATGCTTTCCACTATACCGAG 16612 |||| || ||||| | ||||| ||| ||| |||| |||||| || ||| ||||| Sbjct 291 CGTGGCGTGCTGAAGGTATTCCTGGAGAACGTGATCCGTGATGCGGTCACCTACACCGAA 232 Query 16613 CACGCTAAACGTAAGACTGTCACCTCCATGGATATCGTCTATGCATTGAAACGTCAAGGC 16672 ||||| || || ||||| ||||| | ||||| |||| || || |||| |||||||| Sbjct 231 CACGCCAAGCGCAAGACCGTCACAGCGATGGACGTCGTGTACGCGCTGAAGCGTCAAGGT 172 Query 16673 CGTAAGATTTATGGTTTTGGAAGTTAA 16699 || | | || ||||| ||| ||||| Sbjct 171 CGCACTCTGTACGGTTTCGGAGGTTAA 145 >seq166 Length=108034 Score = 206 bits (228), Expect = 4e-49 Identities = 206/267 (77%), Gaps = 0/267 (0%) Strand=Plus/Plus Query 16433 GCTAAGCGTCATCGCAGATCTCTTCGAGATAACATCCAAGGAATCACCAAGCCAGCTATC 16492 || ||||||||||||| | || || ||||||||||| ||||||||||||||||||||| Sbjct 30037 GCCAAGCGTCATCGCAAAGTGCTGCGCGATAACATCCAGGGAATCACCAAGCCAGCTATC 30096 Query 16493 CGTCGTCTGGCTCGTCGTGGTGGAGTCAAGCGTGTCTCTGGATTGGTCTATGAAGAGATT 16552 ||||||||||| || ||||| ||||| |||||| ||||||| || | || || || | | Sbjct 30097 CGTCGTCTGGCCCGCCGTGGAGGAGTGAAGCGTATCTCTGGCCTGATTTACGAGGAAACT 30156 Query 16553 CGTGATGTTTTGAAGATCTTCCTCAAGACCGTTATCCATGATGCTTTCCACTATACCGAG 16612 |||| || ||||| | ||||| ||| ||| |||| |||||| || ||| ||||| Sbjct 30157 CGTGGCGTGCTGAAGGTATTCCTGGAGAACGTGATCCGTGATGCGGTCACCTACACCGAA 30216 Query 16613 CACGCTAAACGTAAGACTGTCACCTCCATGGATATCGTCTATGCATTGAAACGTCAAGGC 16672 ||||| || || ||||| ||||| | ||||| |||| || || |||| |||||||| Sbjct 30217 CACGCCAAGCGCAAGACCGTCACAGCGATGGACGTCGTGTACGCGCTGAAGCGTCAAGGT 30276 Query 16673 CGTAAGATTTATGGTTTTGGAAGTTAA 16699 || | | || ||||| ||| ||||| Sbjct 30277 CGCACTCTGTACGGTTTCGGAGGTTAA 30303 Score = 206 bits (228), Expect = 4e-49 Identities = 206/267 (77%), Gaps = 0/267 (0%) Strand=Plus/Plus Query 16433 GCTAAGCGTCATCGCAGATCTCTTCGAGATAACATCCAAGGAATCACCAAGCCAGCTATC 16492 || ||||||||||||| | || || ||||||||||| ||||||||||||||||||||| Sbjct 37658 GCCAAGCGTCATCGCAAAGTGCTGCGCGATAACATCCAGGGAATCACCAAGCCAGCTATC 37717 Query 16493 CGTCGTCTGGCTCGTCGTGGTGGAGTCAAGCGTGTCTCTGGATTGGTCTATGAAGAGATT 16552 ||||||||||| || ||||| ||||| |||||| ||||||| || | || || || | | Sbjct 37718 CGTCGTCTGGCCCGCCGTGGAGGAGTGAAGCGTATCTCTGGCCTGATTTACGAGGAAACT 37777 Query 16553 CGTGATGTTTTGAAGATCTTCCTCAAGACCGTTATCCATGATGCTTTCCACTATACCGAG 16612 |||| || ||||| | ||||| ||| ||| |||| |||||| || ||| ||||| Sbjct 37778 CGTGGCGTGCTGAAGGTATTCCTGGAGAACGTGATCCGTGATGCGGTCACCTACACCGAA 37837 Query 16613 CACGCTAAACGTAAGACTGTCACCTCCATGGATATCGTCTATGCATTGAAACGTCAAGGC 16672 ||||| || || ||||| ||||| | ||||| |||| || || |||| |||||||| Sbjct 37838 CACGCCAAGCGCAAGACCGTCACAGCGATGGACGTCGTGTACGCGCTGAAGCGTCAAGGT 37897 Query 16673 CGTAAGATTTATGGTTTTGGAAGTTAA 16699 || | | || ||||| ||| ||||| Sbjct 37898 CGCACTCTGTACGGTTTCGGAGGTTAA 37924 >seq178 Length=86717 Score = 201 bits (222), Expect = 2e-47 Identities = 207/268 (77%), Gaps = 2/268 (1%) Strand=Plus/Minus Query 16433 GCTAAGCGTCATCGCAGATCTCTT-CGAGATAACATCCAAGGAATCACCAAGCCAGCTAT 16491 || ||||||||||||| | | || |||||||||||||| || ||||||||||||||||| Sbjct 5886 GCCAAGCGTCATCGCA-AGGTGTTGCGAGATAACATCCAGGGCATCACCAAGCCAGCTAT 5828 Query 16492 CCGTCGTCTGGCTCGTCGTGGTGGAGTCAAGCGTGTCTCTGGATTGGTCTATGAAGAGAT 16551 |||||||||||| |||||||| || || |||||| |||| ||| || |||| || || | Sbjct 5827 CCGTCGTCTGGCGCGTCGTGGAGGTGTGAAGCGTATCTCCGGACTGATCTACGAGGAAAC 5768 Query 16552 TCGTGATGTTTTGAAGATCTTCCTCAAGACCGTTATCCATGATGCTTTCCACTATACCGA 16611 |||| || ||||| | |||||| ||| ||| || | |||||| | || || || Sbjct 5767 GCGTGGCGTGCTGAAGGTGTTCCTCGAGAACGTGATTCGCGATGCTGTGACGTACACGGA 5708 Query 16612 GCACGCTAAACGTAAGACTGTCACCTCCATGGATATCGTCTATGCATTGAAACGTCAAGG 16671 ||||| || || ||||| |||||| |||||||| |||| || || |||| || || || Sbjct 5707 ACACGCCAAGCGCAAGACCGTCACCGCCATGGATGTCGTGTACGCTCTGAAGCGCCAGGG 5648 Query 16672 CCGTAAGATTTATGGTTTTGGAAGTTAA 16699 ||| | | | || || |||||| ||||| Sbjct 5647 CCGCACGCTGTACGGATTTGGAGGTTAA 5620 >seq29 Length=2074802 Score = 178 bits (196), Expect = 2e-40 Identities = 166/211 (79%), Gaps = 0/211 (0%) Strand=Plus/Minus Query 16433 GCTAAGCGTCATCGCAGATCTCTTCGAGATAACATCCAAGGAATCACCAAGCCAGCTATC 16492 || ||||||||||||| | || || ||||||||||| ||||||||||||||||||||| Sbjct 1422483 GCCAAGCGTCATCGCAAAGTGCTGCGCGATAACATCCAGGGAATCACCAAGCCAGCTATC 1422424 Query 16493 CGTCGTCTGGCTCGTCGTGGTGGAGTCAAGCGTGTCTCTGGATTGGTCTATGAAGAGATT 16552 ||||||||||| || ||||| ||||| |||||| ||||||| || | || || || | | Sbjct 1422423 CGTCGTCTGGCCCGCCGTGGAGGAGTGAAGCGTATCTCTGGCCTGATTTACGAGGAAACT 1422364 Query 16553 CGTGATGTTTTGAAGATCTTCCTCAAGACCGTTATCCATGATGCTTTCCACTATACCGAG 16612 |||| || ||||| | ||||| ||| ||| |||| |||||| || ||| ||||| Sbjct 1422363 CGTGGCGTGCTGAAGGTATTCCTGGAGAACGTGATCCGTGATGCGGTCACCTACACCGAA 1422304 Query 16613 CACGCTAAACGTAAGACTGTCACCTCCATGG 16643 ||||| || || ||||| ||||| | |||| Sbjct 1422303 CACGCCAAGCGCAAGACCGTCACAGCGATGG 1422273 >seq21 Length=2327072 Score = 170 bits (188), Expect = 3e-38 Identities = 200/268 (75%), Gaps = 2/268 (1%) Strand=Plus/Minus Query 16433 GCTAAGCGTCATCGCAGATCTCTT-CGAGATAACATCCAAGGAATCACCAAGCCAGCTAT 16491 || |||||||| || | | | || || ||||||||||| || || |||||||| || || Sbjct 403911 GCAAAGCGTCACCGTA-AGGTGTTGCGTGATAACATCCAGGGTATTACCAAGCCCGCCAT 403853 Query 16492 CCGTCGTCTGGCTCGTCGTGGTGGAGTCAAGCGTGTCTCTGGATTGGTCTATGAAGAGAT 16551 ||| |||||||||||||| |||||||| |||||| | || || || |||| || |||| Sbjct 403852 CCGCCGTCTGGCTCGTCGCGGTGGAGTGAAGCGTATTTCCGGCCTGATCTACGAGGAGAC 403793 Query 16552 TCGTGATGTTTTGAAGATCTTCCTCAAGACCGTTATCCATGATGCTTTCCACTATACCGA 16611 || | ||| ||||| | ||||| ||| ||| |||| || || || ||| ||||| Sbjct 403792 GCGCGGTGTGCTGAAGGTGTTCCTGGAGAACGTGATCCGCGACGCCGTCACCTACACCGA 403733 Query 16612 GCACGCTAAACGTAAGACTGTCACCTCCATGGATATCGTCTATGCATTGAAACGTCAAGG 16671 |||||| || || ||||| || || | |||||| | || || || |||| || || || Sbjct 403732 GCACGCCAAGCGCAAGACCGTGACGGCGATGGATGTGGTGTACGCTCTGAAGCGCCAGGG 403673 Query 16672 CCGTAAGATTTATGGTTTTGGAAGTTAA 16699 ||||| | | || ||||| ||| ||||| Sbjct 403672 CCGTACGCTGTACGGTTTCGGAGGTTAA 403645 >seq7919 Length=994 Score = 129 bits (142), Expect = 9e-26 Identities = 103/124 (83%), Gaps = 0/124 (0%) Strand=Plus/Minus Query 16433 GCTAAGCGTCATCGCAGATCTCTTCGAGATAACATCCAAGGAATCACCAAGCCAGCTATC 16492 || ||||||||||||| | || || ||||||||||| ||||||||||||||||||||| Sbjct 129 GCCAAGCGTCATCGCAAAGTGCTGCGCGATAACATCCAGGGAATCACCAAGCCAGCTATC 70 Query 16493 CGTCGTCTGGCTCGTCGTGGTGGAGTCAAGCGTGTCTCTGGATTGGTCTATGAAGAGATT 16552 ||||||||||| || ||||| ||||| |||||| ||||||| || | || || || | | Sbjct 69 CGTCGTCTGGCCCGCCGTGGAGGAGTGAAGCGTATCTCTGGCCTGATTTACGAGGAAACT 10 Query 16553 CGTG 16556 |||| Sbjct 9 CGTG 6 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 79053831731103