Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Anopheles_20stephensi_20[genbank_20GCA_5F000300775.2_202013-07-19] 23,371 sequences; 221,324,304 total letters Query= NC_006883.2 Length=252401 Score E Sequences producing significant alignments: (Bits) Value seq72 100 5e-16 >seq72 Length=881775 Score = 100 bits (110), Expect = 5e-16 Identities = 363/554 (66%), Gaps = 18/554 (3%) Strand=Plus/Minus Query 193647 GAGATCTATAATCTTGGTGCTCAAAGTCATGTTAAAGTTTCCTTTGAGATGCCAGAGTAT 193706 || || || || || | || ||||||||||| ||| |||| || || || || || Sbjct 354670 GAAATTTACAACCTAGCCGCCCAAAGTCATGTGAAAATTTCGTTCGATTTGAGCGAATAC 354611 Query 193707 ACTTCTAATGTTGATGCTTTAGGAACTCTTAGAATACTTGAAGCAGTTCGTATGTTGGGA 193766 || | | || ||||| | || || || | | || || || | |||| |||| Sbjct 354610 ACGGCCGAGGTGGATGCGGTCGGTACGCTCCGGCTGCTCGATGCGATCCGTACCGTGGGG 354551 Query 193767 ATGGAGAAAGATGTTC-GCATCTATCAGGCATCTACCAGCGAACTGTATGGT--GGTGTT 193823 ||| ||||| | || || |||| || || || ||| |||||||| || |||| Sbjct 354550 CAGGA-AAAGACGGTCCGCTTCTACCAAGCGTCCACCTCGGAACTGTACGGCAAGGTGG- 354493 Query 193824 CTAGGCACTCCACTATCAGAAACCACACCATTTCATCCACGCTCTCCTTATGG-TGTAGC 193882 || | || || | |||| ||||| || | |||||||| || || | ||| || Sbjct 354492 CT-GAAACGCCGCAGAACGAAAAGACACCGTTCTACCCACGCTCACCGTACGCCTGT-GC 354435 Query 193883 AAAGTTGTATGGTTATTGGATCATCAAGAATTATCGTGAGTCATATGGATTCCACGCTAG 193942 |||| |||| ||||| ||||| | | || ||||| || | || | ||| | Sbjct 354434 AAAGATGTACGGTTACTGGATTGTGATAAACTATCGCGAAGCGTACAACATGTTCGCCTG 354375 Query 193943 TTCTGGTATTCTCTTCAATCACGAATCTCCAAGAAGAGGTGAGACATTTGTAACTCGTAA 194002 || || || ||||| |||||||| || | |||| || | || || || || || Sbjct 354374 CAACGGGATCCTTTTCAACCACGAATCACCGCGCCGAGGAGAAAACTTCGTTACACGCAA 354315 Query 194003 GATTACACAA--GGTTTATCTAAGATCTCTGTTGGATTACAG-AAGATT--CTTTATCTT 194057 ||| || | |||| | ||||| || | ||| ||| |||| | || | || Sbjct 354314 GATCACCCGTTCGGTTG--CGAAGATTTCGCTCGGA---CAGCAAGAGTACCTGGAGCTG 354260 Query 194058 GGTAATCTTAATGCTAAGAGGGATTGGGGACACGCAAAGGATTATGTTGAAGCGATGTGG 194117 |||||||| | | ||| | || ||||| ||||| || || || || |||||||||||| Sbjct 354259 GGTAATCTGGACTCGAAGCGTGACTGGGGCCACGCCAAAGACTACGTGGAAGCGATGTGG 354200 Query 194118 TTAATGTTGCAACAGGATGAACCCGATGATTATGTGATTGCTACAGGTGAACAGTATTCT 194177 | ||| |||| ||||| || || |||| ||| |||||||| || ||| | | || Sbjct 354199 CTGATGATGCAGCAGGAACGGCCGGAAGATTTTGTCATTGCTACCGGGGAAACGCACTCG 354140 Query 194178 GTTAGAGACTTTGT 194191 || |||| ||||| Sbjct 354139 GTGCGAGAGTTTGT 354126 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 807319282842760