Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Anopheles_20stephensi_20[genbank_20GCA_5F000300775.2_202013-07-19] 23,371 sequences; 221,324,304 total letters Query= NC_007151.1 Length=149622 Score E Sequences producing significant alignments: (Bits) Value seq59 104 2e-17 seq1 89.7 5e-13 >seq59 Length=1145648 Score = 104 bits (114), Expect = 2e-17 Identities = 291/440 (66%), Gaps = 15/440 (3%) Strand=Plus/Plus Query 147447 AGATGCTGATTGACCACTTGATACTCGCCCGACAGAACTCTTCGTACGTACAAATTACTA 147506 ||||| || || ||||| ||| ||||||| || || || | || ||| | || Sbjct 141075 AGATGGTGGTTCACCACCTGAAACTCGCCGGAAAGTACACGCCGATTGTAAACGTTGGAC 141134 Query 147507 GTAAACGGCTCGAACGACTCGTTGTTACCTAGAATCTGTGCAGTCGTTGCCGTCGGCATG 147566 || |||| ||||| |||||||||||||| | || ||||| |||| || || ||||| Sbjct 141135 GTGTACGGTTCGAAGGACTCGTTGTTACCCAAGATTTGTGCCGTCGAAGCGGTAGGCATC 141194 Query 147567 TAAGCAATCAATAATGAATTGCGTAAGCCGTGCATAGCCATTTCTCGCTTAAGCTCGTCC 147626 || | || | |||||||| | ||||||| | || |||| | ||| | |||| || Sbjct 141195 GGTGCCAACAGCAGCGAATTGCGGATGCCGTGCTTTGCAATTTTTTCCTTCAACTCGGCC 141254 Query 147627 CAGTTCCAAAGATCATTCGATTGGTTAATATTCCACAAATCAAACTGTAAAAGTCCACAA 147686 || ||||||||||| ||| | | | ||||||| || |||| | | || Sbjct 141255 CAATTCCAAAGATC---CGACGGTTCCTTCTTCCACATTTCGTACTGCAGGATGCCTTTG 141311 Query 147687 CTTGCAGGGCTTCCATCGTAAGAATCGTATGTTCCGTGCAGTTTAGCTAGTTCGATACTT 147746 ||| | || || || ||||| | ||||| | ||||| | || | || | | | Sbjct 141312 CTTACCGGACTCCCTTCGTACGTTTCGTACGGTCCGTCGCGGGCGGCCAACTC-ACAGCT 141370 Query 147747 TGACTT--AGTGCACCATAATAAATAGTTTCTGAAATCTTTTTATTTAAATCTCTAGCCT 147804 | ||| | ||| || || || || ||||| |||| | || || | | | |||| Sbjct 141371 CG-CTTCCAATGCTCCGTAGTAGATTGTTTCGAAAATTTGTTGGTTCAGCTTTTGGGCCT 141429 Query 147805 CTTGGCTGTCGTAGGGCATATC----CAAAATGGCGAACGTATCCGCAAGTCCTTGAATA 147860 | | ||| ||||| || ||| | |||||| ||||| ||| || | || |||| | Sbjct 141430 CCTCGCTTTCGTACGG-ATAGCGCATCAAAAT---GAACGCATCGGCCATGCCCTGAACA 141485 Query 147861 CCGATACCGATGGGTCGGTG 147880 ||||||||||| || | ||| Sbjct 141486 CCGATACCGATCGGCCTGTG 141505 >seq1 Length=5975090 Score = 89.7 bits (98), Expect = 5e-13 Identities = 147/212 (69%), Gaps = 0/212 (0%) Strand=Plus/Plus Query 26769 ATGCAAGTGTTTGTAAAAACATTAACTGGAAAATCGATCACCATCGAATTAGAATCAAAC 26828 ||||| | || || || || | || ||||| | |||||| |||| | || || | Sbjct 5042934 ATGCAGATCTTCGTCAAGACTCTGACCGGAAAGACCATCACCCTCGAGGTTGAGCCATCC 5042993 Query 26829 GACACCATCGAGCAAGTCAAACAAAAGATTACCGACAAAGAAGGGATACCTCCCGATCAA 26888 |||||||||||| | || || |||||| ||||| || || || || || ||||| Sbjct 5042994 GACACCATCGAGAATGTGAAGGCCAAGATTCAGGACAAGGAGGGAATCCCGCCAGATCAG 5043053 Query 26889 CAAAGACTCATTTACGGCGGCAAACAACTCGAAGATGATAGAAACGTCAGCGACTATAAC 26948 || | || || | | |||||| || || ||||||| | | | | ||||||||| Sbjct 5043054 CAGCGTCTGATCTTTGCCGGCAAGCAGCTGGAAGATGGCCGCACCCTGTCGGACTATAAC 5043113 Query 26949 ATTCAAAAAGAATCTACTATCCATCTGGTCCT 26980 || || || ||||| || ||||||||||||| Sbjct 5043114 ATCCAGAAGGAATCCACCCTCCATCTGGTCCT 5043145 Score = 86.0 bits (94), Expect = 6e-12 Identities = 146/212 (69%), Gaps = 0/212 (0%) Strand=Plus/Plus Query 26769 ATGCAAGTGTTTGTAAAAACATTAACTGGAAAATCGATCACCATCGAATTAGAATCAAAC 26828 ||||| | || || || || | || ||||| | |||||| |||| | || || | Sbjct 5043162 ATGCAGATCTTCGTCAAGACTCTGACCGGAAAGACCATCACCCTCGAGGTTGAGCCATCC 5043221 Query 26829 GACACCATCGAGCAAGTCAAACAAAAGATTACCGACAAAGAAGGGATACCTCCCGATCAA 26888 |||||||||||| | || || |||||| ||||| || || || || || ||||| Sbjct 5043222 GACACCATCGAGAATGTGAAGGCCAAGATTCAGGACAAGGAGGGAATCCCGCCAGATCAG 5043281 Query 26889 CAAAGACTCATTTACGGCGGCAAACAACTCGAAGATGATAGAAACGTCAGCGACTATAAC 26948 || | || || | | ||||| || || ||||||| | | | | ||||||||| Sbjct 5043282 CAGCGTCTGATCTTTGCTGGCAAGCAGCTGGAAGATGGCCGCACCCTGTCGGACTATAAC 5043341 Query 26949 ATTCAAAAAGAATCTACTATCCATCTGGTCCT 26980 || || || ||||| || ||||||||||||| Sbjct 5043342 ATCCAGAAGGAATCCACCCTCCATCTGGTCCT 5043373 Score = 84.2 bits (92), Expect = 2e-11 Identities = 148/216 (69%), Gaps = 0/216 (0%) Strand=Plus/Plus Query 26765 CAAAATGCAAGTGTTTGTAAAAACATTAACTGGAAAATCGATCACCATCGAATTAGAATC 26824 ||| |||||| | || || || || | || ||||| | |||||| | || | || | Sbjct 5042702 CAACATGCAAATCTTCGTCAAGACTCTGACCGGAAAGACTATCACCCTTGAGGTTGAGCC 5042761 Query 26825 AAACGACACCATCGAGCAAGTCAAACAAAAGATTACCGACAAAGAAGGGATACCTCCCGA 26884 | ||||||||||||| | || || |||||| ||||| || || || || || || Sbjct 5042762 ATCCGACACCATCGAGAATGTGAAGGCCAAGATTCAGGACAAGGAGGGAATCCCGCCAGA 5042821 Query 26885 TCAACAAAGACTCATTTACGGCGGCAAACAACTCGAAGATGATAGAAACGTCAGCGACTA 26944 ||| || | || || | | || || || || ||||||| | | | | ||||| Sbjct 5042822 TCAGCAGCGTCTGATCTTTGCTGGTAAGCAGCTGGAAGATGGCCGCACCCTGTCGGACTA 5042881 Query 26945 TAACATTCAAAAAGAATCTACTATCCATCTGGTCCT 26980 |||||| || || ||||| || ||||||||||||| Sbjct 5042882 TAACATCCAGAAGGAATCCACCCTCCATCTGGTCCT 5042917 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 478522564763120