Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Anopheles_20stephensi_20[genbank_20GCA_5F000300775.2_202013-07-19]
23,371 sequences; 221,324,304 total letters
Query= NC_007921.1
Length=147544
Score E
Sequences producing significant alignments: (Bits) Value
seq59 336 2e-87
seq6 159 3e-34
seq57 143 3e-29
seq1 120 3e-22
seq20 116 3e-21
seq24 87.8 2e-12
>seq59
Length=1145648
Score = 336 bits (372), Expect = 2e-87
Identities = 995/1511 (66%), Gaps = 40/1511 (3%)
Strand=Plus/Plus
Query 145055 TGATTGACGACCTGAAACTCGCCGGCCAACACACGACGCAAATACACGTTAGACGTGAAG 145114
|| || || |||||||||||||||| | ||||| || || ||||| |||||| |
Sbjct 141081 TGGTTCACCACCTGAAACTCGCCGGAAAGTACACGCCGATTGTAAACGTTGGACGTGTAC 141140
Query 145115 GGTTCAAAAGACTCGTTATTGCCCAGGATTTGAGCGGTCGTTGCGGTGGGCATGTACGCC 145174
||||| || |||||||| || |||| |||||| || |||| ||||| ||||| |||
Sbjct 141141 GGTTCGAAGGACTCGTTGTTACCCAAGATTTGTGCCGTCGAAGCGGTAGGCATCGGTGCC 141200
Query 145175 ACCAATAATGAATTGCGCAGGCCGTGCTTCTTGATGTCTTCCTTTAGCGTACCCCAATCC 145234
| || | |||||||| | ||||||||| || | |||||| | | |||||| |
Sbjct 141201 AACAGCAGCGAATTGCGGATGCCGTGCTTTGCAATTTTTTCCTTCAACTCGGCCCAATTC 141260
Query 145235 CATAGCGAAGTCGGCCTCACGTCCCACATGTCGTACTGCAAAATGCCCTCGCTGGCGGGG 145294
|| || | ||| | | |||||| |||||||||| ||||| | ||| | ||
Sbjct 141261 CAAAGATCCGACGGTTCCTTCTTCCACATTTCGTACTGCAGGATGCCTTTGCTTACCGGA 141320
Query 145295 CTGCCTT-GAAAG----GAACTGTAACTGCCCCAAGTTTTGGCGAGCTCGCAACTCGCCT 145349
|| |||| | | | | || || | | | | | ||| | ||| || ||||| |
Sbjct 141321 CTCCCTTCGTACGTTTCGTACGGT--CCGTCGCGGGC---GGCCAACTCACAGCTCGCTT 141375
Query 145350 CCAGAGCGCCGAAATAAATTGTCTCGGCAATTTGCCTGTTGAGCAGCATCGCTTCATCGC 145409
||| || ||| | || ||||| ||| |||||| ||| ||| || || ||||
Sbjct 141376 CCAATGCTCCGTAGTAGATTGTTTCGAAAATTTGTTGGTTCAGCTTTTGGGCCTCCTCGC 141435
Query 145410 TCTCGTACGGCATGCGCAGCAGTACAAAAGCATCGGCGAGCCCCTGTATTCCCACGCCGA 145469
| |||||||| ||||| || | || |||||||| | ||||| | || | ||||
Sbjct 141436 TTTCGTACGGATAGCGCATCAAAATGAACGCATCGGCCATGCCCTGAACACCGATACCGA 141495
Query 145470 TGGGCCGATGTTTCATGTTG---CTCATCCTCGCCG--ACTCGATAGGATATCGATTACG 145524
| |||| || ||||||| | | || | ||| ||| ||||| | | |||
Sbjct 141496 TCGGCCTGTGCCGCATGTTGGAGCGCTTCGCCTCCGGTACTGGATAGTA----GTTTATA 141551
Query 145525 GTCGATAATTTTATTCAAGTTTCGCACTACTACCTTTGTAATGTGCCGCAACTTTTCAAA 145584
||||||||||| |||| || ||| | | ||| | | | | || ||| ||||
Sbjct 141552 -TCGATAATTTTGTTCAGATTGCGCGTCAAAATCTTCGCGACATCCTTCAGCTTGGCAAA 141610
Query 145585 GTCAAACCGAGCCTCGTCAACGACCACACAGCTATTGACGGCGATCGACGCCAAATTACA 145644
||| || | | ||| |||| | | || | |||||||| |||||||| ||
Sbjct 141611 GTCGTAC---GTTTTGTCCGGTTTCACAAACATGTTCAGCGCGATCGAGGCCAAATTGCA 141667
Query 145645 AACTGCCGTCTCCTCGG-CGTCGCTGTATTGTACGATCTCGGCGCACAAATTGCTACATT 145703
|| || | || || || || ||| | || ||||||| |||| |||| ||| |
Sbjct 141668 CACCGCTATTTCATCCTTCGACGA-GTACTCCACTATCTCGGTACACAGATTGGAACACT 141726
Query 145704 TGATGGTTCCCAGATTTTGCTGATTACTTTTCCTGTTGCACGCGTCCTTGTAGAGCATGT 145763
| ||||| || | || |||||||| || || | ||||||||| |||||||| |||||||
Sbjct 141727 TTATGGTGCCGATGTTCTGCTGATTGCTCTTGCGGTTGCACGCATCCTTGTACAGCATGT 141786
Query 145764 ACGGTCCGCCAGTCTCCACCTGCGTCTCCACGAT--AAAACGGTGCAAGTCCTGCGCACG 145821
|||| |||| || |||||||||| || | ||| |||| | | |||||| ||
Sbjct 141787 ACGGAACGCCCGTTTCCACCTGCGATTCGATGATGGCAAACCAT--AGGTCCTGTGCCTT 141844
Query 145822 CACCTGCTGCTGGTAGCGGCCCTCTTCTTCGTATTTCCTGTAGAGCTCCTCAAACGCGGA 145881
|||||| | | || ||||| | ||||| |||| |||| ||| ||| |
Sbjct 141845 CACCTGGCGTATAAATCGACCCTCCTGCTCGTACCCAGTGTACAGCTTCTCGAACTCTTC 141904
Query 145882 ACCGTAGCAATCGGACAGGCCGGGACACTTGTTGGGACACATCAGCGACCATACGCCGTT 145941
|| | || | || ||||| || | || || |||||||| ||| | ||||
Sbjct 141905 GCCCCAAGTGTCAGCCAATCCGGGGCAGTCGTGTGGGCACATCAGGCTCCACATTTCGTT 141964
Query 145942 GGCGTTGACGCGCTCCATAAACAAATCTGGCACCCACAGCGCGTACATCAAGTCGCGCGC 146001
|| | || |||| ||| |||| ||| || | |||||| ||||| | || |||||| ||
Sbjct 141965 CGCCTCCACACGCTGCATGAACAGATCCGGGATCCACAGGGCGTAGAACATGTCGCGGGC 142024
Query 146002 TTTGCA-ATCCTCAGCACCCATGTTTCGCTTCAAATTAAGCACACT-ATAGATGTCCGCG 146059
||| ||||| || ||||| ||||| || || | ||| | || ||| ||
Sbjct 142025 -ACGCACCTCCTCCTTGCCGGTGTTTTTCTTCAGATCCAG-AAACTCGAATATATCCCCG 142082
Query 146060 TGCCACGGTTCAATATAGACGGCGAGGGCTCCTTTTCG---TTTGCCACCCTGGTCCACG 146116
||||| ||||| | |||| ||| | ||| || || ||||||||||| ||||||
Sbjct 142083 TGCCATGGTTCGAGGTAGATGGCAAAGGCGCCGGGCCGCTTGTTGCCACCCTGATCCACG 142142
Query 146117 TGACGTACCATGTTGTTAAAGACGCGCACCATGGGCTCGACGCCGCTGGCTACGCCGTTC 146176
| || || ||||||| | ||||||| ||| ||| | | ||| | | | || |||
Sbjct 142143 TACCGGGCCGTGTTGTTGTAAACGCGCAGCATCGGCACCAACCCGTTCGAAATCCCATTC 142202
Query 146177 GTAGAGTTTATTCTGGTGCCGCGGGAGCGCACGCAATGAACATTCACGCCGAGACCGCCG 146236
|| | || || || || ||| | ||| || || |||| |||| |||||||
Sbjct 142203 GTGCCGGAGATGTACGTTCCTTTGGCGCGAATGCAGTGCACGTTCAGCCCGATACCGCCG 142262
Query 146237 CCGTACTTGGATATAGCGGCGCAGTCGCCGAGCGTCTCGTAGATGCCGTCAATGCTATCG 146296
| | ||||| || || || | ||||| ||||| || || ||||| || |||
Sbjct 142263 GCCGATTTGGAAATCAGTGCACACTGCTTTAGCGTATCGTAAATACCCTCAATACTGTCG 142322
Query 146297 CTTCGA-ATGCCGAGCAGAAAGCACGAGCACATCTGCGCCATCGGCGTCCCCGCCGAGAA 146355
| ||| ||| ||||||||||| || | | ||||| | |||| | |||| ||
Sbjct 142323 -TCCGACATGGTAAGCAGAAAGCAAGACGAAAGCTGCGGACGCTGCGTAGCGGCCGCAAA 142381
Query 146356 CAACGTCGGGCTCGCGTGCGTAAA-CATTTTTCGGCTCATCATCCGATACGTTTCGATAG 146414
|| ||||| || || ||||| | |||| | || ||||| ||||| |
Sbjct 142382 CATGGTCGGTGAGGCATGGGTAAAGTAGCGCTCGG-AAAGCAGATTGTACGTCTCGATGG 142440
Query 146415 CGTCTTGAATGTCGTCGCCATGAATGCCCAAAGCGACGCGCATGAGCATGTGTTGGGGCC 146474
| | | |||||| || || ||||| || | || |||||||| ||||||||||| || |
Sbjct 142441 CAGCATCAATGTCTTCACCGTGAATACCGATGGCAACGCGCATCAGCATGTGTTGCGGTC 142500
Query 146475 GCTCCGCCACTTGATTGTCAATCTTTAACAAATAGCCGTTCTCCAGGGTTTTGTATCCGA 146534
||||| | | | | | ||||| | ||||||| |||||| |||||| | ||||
Sbjct 142501 GCTCCACAATCTTACCCTTGATCTTCAGCAAATAGGAACGCTCCAGTGTTTTGAAGCCGA 142560
Query 146535 AAAATTTGTAC 146545
|| | ||||||
Sbjct 142561 AATAGTTGTAC 142571
>seq6
Length=4219845
Score = 159 bits (176), Expect = 3e-34
Identities = 172/228 (75%), Gaps = 0/228 (0%)
Strand=Plus/Plus
Query 131007 GCCACCGCGCAAACGCAGCACTAAATGTATGGTCGACTCCTTTTGAATGTTGTAATCGCT 131066
||||||||||| || ||||| | ||| | |||||||||||| || |||||||| |||
Sbjct 2100918 GCCACCGCGCAGGCGAAGCACCAGATGAAGGGTCGACTCCTTCTGGATGTTGTAGTCGGA 2100977
Query 131067 CATGGTGCGCGAGTCCTCTAGCTGCTTGCCTGCGTAGATTAAACGCTGCTGGTCCGGAGG 131126
|| |||||| |||||| |||||||| || ||| |||| | ||||||||| ||||| ||
Sbjct 2100978 CAGGGTGCGTCCGTCCTCCAGCTGCTTACCGGCGAAGATCAGACGCTGCTGATCCGGCGG 2101037
Query 131127 GATTCCTTCTTTGTCGGTGATTTTCTGCTTGAGCTGCTCCACAGTATCGGTGGACTCGAT 131186
||| || || ||||| ||| ||| ||| | | ||| | ||||| | | |||||
Sbjct 2101038 GATGCCCTCCTTGTCCTGGATCTTCGCCTTCACATTCTCGATCGTATCCGATGGCTCGAC 2101097
Query 131187 GTCGACGGTAACGGTTTTACCGGTTAGAGTTTTTACGAAAATCTGCAT 131234
|| | |||| ||| ||||| || || ||||| ||||| ||||||||
Sbjct 2101098 CTCAAGAGTAATGGTCTTACCCGTGAGGGTTTTGACGAAGATCTGCAT 2101145
>seq57
Length=1190389
Score = 143 bits (158), Expect = 3e-29
Identities = 169/229 (74%), Gaps = 0/229 (0%)
Strand=Plus/Plus
Query 131008 CCACCGCGCAAACGCAGCACTAAATGTATGGTCGACTCCTTTTGAATGTTGTAATCGCTC 131067
|||||||| | |||||||| | ||| | ||| || ||||| ||||||||||| || |
Sbjct 631298 CCACCGCGGAGTCGCAGCACCAGATGAAGGGTAGATTCCTTCTGAATGTTGTAGTCCGAC 631357
Query 131068 ATGGTGCGCGAGTCCTCTAGCTGCTTGCCTGCGTAGATTAAACGCTGCTGGTCCGGAGGG 131127
| |||||| ||||| ||||||||||| ||| |||| | ||||||||| || |||||
Sbjct 631358 AGGGTGCGACCATCCTCCAGCTGCTTGCCGGCGAAGATGAGACGCTGCTGATCTGGAGGA 631417
Query 131128 ATTCCTTCTTTGTCGGTGATTTTCTGCTTGAGCTGCTCCACAGTATCGGTGGACTCGATG 131187
|||||||| || || ||| || ||| | | ||| | || || | | |||||
Sbjct 631418 ATTCCTTCCTTATCCTGGATCTTGGCCTTCACATTCTCGATCGTGTCCGAAGGCTCGACC 631477
Query 131188 TCGACGGTAACGGTTTTACCGGTTAGAGTTTTTACGAAAATCTGCATGA 131236
|| | || | ||| || ||||| || ||||| ||||||||||||||||
Sbjct 631478 TCAAGTGTGATGGTCTTGCCGGTGAGTGTTTTCACGAAAATCTGCATGA 631526
>seq1
Length=5975090
Score = 120 bits (132), Expect = 3e-22
Identities = 164/229 (72%), Gaps = 0/229 (0%)
Strand=Plus/Minus
Query 131007 GCCACCGCGCAAACGCAGCACTAAATGTATGGTCGACTCCTTTTGAATGTTGTAATCGCT 131066
|||||| |||| ||| || || | ||| | ||| || ||||| || ||||| || ||
Sbjct 5043161 GCCACCACGCAGACGAAGGACCAGATGGAGGGTGGATTCCTTCTGGATGTTATAGTCCGA 5043102
Query 131067 CATGGTGCGCGAGTCCTCTAGCTGCTTGCCTGCGTAGATTAAACGCTGCTGGTCCGGAGG 131126
|| |||||| || || ||||||||||| || |||| | ||||||||| || || ||
Sbjct 5043101 CAGGGTGCGGCCATCTTCCAGCTGCTTGCCGGCAAAGATCAGACGCTGCTGATCTGGCGG 5043042
Query 131127 GATTCCTTCTTTGTCGGTGATTTTCTGCTTGAGCTGCTCCACAGTATCGGTGGACTCGAT 131186
|||||| || ||||| || || ||| | | ||| | || |||| | ||| |
Sbjct 5043041 GATTCCCTCCTTGTCCTGAATCTTGGCCTTCACATTCTCGATGGTGTCGGATGGCTCAAC 5042982
Query 131187 GTCGACGGTAACGGTTTTACCGGTTAGAGTTTTTACGAAAATCTGCATG 131235
|||| ||| | ||| || ||||| ||||| || ||||| |||||||||
Sbjct 5042981 CTCGAGGGTGATGGTCTTTCCGGTCAGAGTCTTGACGAAGATCTGCATG 5042933
Score = 118 bits (130), Expect = 1e-21
Identities = 163/228 (71%), Gaps = 0/228 (0%)
Strand=Plus/Minus
Query 131008 CCACCGCGCAAACGCAGCACTAAATGTATGGTCGACTCCTTTTGAATGTTGTAATCGCTC 131067
||||| |||| ||| || || | ||| | ||| || ||||| || ||||| || || |
Sbjct 5043388 CCACCACGCAGACGAAGGACCAGATGGAGGGTGGATTCCTTCTGGATGTTATAGTCCGAC 5043329
Query 131068 ATGGTGCGCGAGTCCTCTAGCTGCTTGCCTGCGTAGATTAAACGCTGCTGGTCCGGAGGG 131127
| |||||| || || ||||||||||| || |||| | ||||||||| || || |||
Sbjct 5043328 AGGGTGCGGCCATCTTCCAGCTGCTTGCCAGCAAAGATCAGACGCTGCTGATCTGGCGGG 5043269
Query 131128 ATTCCTTCTTTGTCGGTGATTTTCTGCTTGAGCTGCTCCACAGTATCGGTGGACTCGATG 131187
||||| || ||||| || || ||| | | ||| | || |||| | ||| |
Sbjct 5043268 ATTCCCTCCTTGTCCTGAATCTTGGCCTTCACATTCTCGATGGTGTCGGATGGCTCAACC 5043209
Query 131188 TCGACGGTAACGGTTTTACCGGTTAGAGTTTTTACGAAAATCTGCATG 131235
|||| ||| | ||| || ||||| ||||| || ||||| |||||||||
Sbjct 5043208 TCGAGGGTGATGGTCTTTCCGGTCAGAGTCTTGACGAAGATCTGCATG 5043161
>seq20
Length=2346360
Score = 116 bits (128), Expect = 3e-21
Identities = 162/227 (71%), Gaps = 0/227 (0%)
Strand=Plus/Plus
Query 131008 CCACCGCGCAAACGCAGCACTAAATGTATGGTCGACTCCTTTTGAATGTTGTAATCGCTC 131067
|| || |||| ||| || || || || | |||||||||||| || |||||||| ||| |
Sbjct 834518 CCTCCACGCAGACGGAGGACCAAGTGCAGGGTCGACTCCTTCTGGATGTTGTAGTCGGAC 834577
Query 131068 ATGGTGCGCGAGTCCTCTAGCTGCTTGCCTGCGTAGATTAAACGCTGCTGGTCCGGAGGG 131127
| || || |||||| |||||||| || ||| |||| ||||||||||| || |||||
Sbjct 834578 AGAGTACGTCCGTCCTCCAGCTGCTTTCCGGCGAAGATCAAACGCTGCTGATCTGGAGGA 834637
Query 131128 ATTCCTTCTTTGTCGGTGATTTTCTGCTTGAGCTGCTCCACAGTATCGGTGGACTCGATG 131187
|| || || ||||| ||| || ||| | | ||| | || || | | |||||
Sbjct 834638 ATACCCTCCTTGTCCTGGATCTTAGCCTTCACGTTCTCGATCGTGTCCGACGGCTCGACC 834697
Query 131188 TCGACGGTAACGGTTTTACCGGTTAGAGTTTTTACGAAAATCTGCAT 131234
|| | || | ||| || || || || || || ||||| ||||||||
Sbjct 834698 TCCAGCGTGATGGTCTTGCCAGTCAGCGTCTTCACGAAGATCTGCAT 834744
Score = 113 bits (124), Expect = 4e-20
Identities = 161/227 (71%), Gaps = 0/227 (0%)
Strand=Plus/Plus
Query 131008 CCACCGCGCAAACGCAGCACTAAATGTATGGTCGACTCCTTTTGAATGTTGTAATCGCTC 131067
|| ||||| | || || || || || | |||||||||||| || |||||||| ||| |
Sbjct 834290 CCCCCGCGAAGTCGAAGAACCAAGTGCAGGGTCGACTCCTTCTGGATGTTGTAGTCGGAC 834349
Query 131068 ATGGTGCGCGAGTCCTCTAGCTGCTTGCCTGCGTAGATTAAACGCTGCTGGTCCGGAGGG 131127
| || || |||||| |||||||| || ||| |||| ||||||||||| || |||||
Sbjct 834350 AGAGTACGACCGTCCTCCAGCTGCTTTCCGGCGAAGATCAAACGCTGCTGATCTGGAGGA 834409
Query 131128 ATTCCTTCTTTGTCGGTGATTTTCTGCTTGAGCTGCTCCACAGTATCGGTGGACTCGATG 131187
|| || || ||||| ||| || ||| | | ||| | || || | | |||||
Sbjct 834410 ATACCCTCCTTGTCCTGGATCTTAGCCTTCACGTTCTCGATCGTGTCCGACGGCTCGACC 834469
Query 131188 TCGACGGTAACGGTTTTACCGGTTAGAGTTTTTACGAAAATCTGCAT 131234
|| | || | ||| || || || || || || ||||| ||||||||
Sbjct 834470 TCCAGCGTGATGGTCTTGCCAGTCAGCGTCTTCACGAAGATCTGCAT 834516
Score = 113 bits (124), Expect = 4e-20
Identities = 161/227 (71%), Gaps = 0/227 (0%)
Strand=Plus/Plus
Query 131008 CCACCGCGCAAACGCAGCACTAAATGTATGGTCGACTCCTTTTGAATGTTGTAATCGCTC 131067
|| || |||| ||| || || || || | |||||||||||| || |||||||| ||| |
Sbjct 834746 CCTCCACGCAGACGGAGGACCAAGTGCAGGGTCGACTCCTTCTGGATGTTGTAGTCGGAC 834805
Query 131068 ATGGTGCGCGAGTCCTCTAGCTGCTTGCCTGCGTAGATTAAACGCTGCTGGTCCGGAGGG 131127
| || || ||||| |||||||| || ||| |||| ||||||||||| || |||||
Sbjct 834806 AGAGTACGACCATCCTCCAGCTGCTTTCCGGCGAAGATCAAACGCTGCTGATCTGGAGGA 834865
Query 131128 ATTCCTTCTTTGTCGGTGATTTTCTGCTTGAGCTGCTCCACAGTATCGGTGGACTCGATG 131187
|| || || ||||| ||| || ||| | | ||| | || || | | |||||
Sbjct 834866 ATACCCTCCTTGTCCTGGATCTTAGCCTTCACGTTCTCGATCGTGTCCGATGGCTCGACC 834925
Query 131188 TCGACGGTAACGGTTTTACCGGTTAGAGTTTTTACGAAAATCTGCAT 131234
|| | || | ||| || || || || || || ||||| ||||||||
Sbjct 834926 TCCAGCGTGATGGTCTTGCCAGTCAGCGTCTTCACGAAGATCTGCAT 834972
>seq24
Length=2206587
Score = 87.8 bits (96), Expect = 2e-12
Identities = 158/231 (68%), Gaps = 0/231 (0%)
Strand=Plus/Minus
Query 46063 CTGCTTAATGCGTTTGAACGTATGCCGTGCGTGCGCAAGAAAACCGACTGGGCGATGAAG 46122
||| ||||||| | ||| | ||||||||| ||||| | ||||||||| | ||
Sbjct 1947815 CTGTTTAATGCCATCGAAACGCTACCGTGCGTGAAGAAGAAGGCAGACTGGGCGCTTAAC 1947756
Query 46123 TGGATCAACAGCAGCACCGCGACTTTCGCCGAGCGTATGGTGGCCTTTGCGATTGTGGAG 46182
|||||| |||| | || | || | ||||||| |||| || ||||| || |||
Sbjct 1947755 TGGATCTCGAGCAAGAAGGCTAACTTTGGCGAGCGTGTGGTCGCATTTGCTGCCGTCGAG 1947696
Query 46183 GGCGTCtttttttCTGGCAGTTTTGCCGCCATCTTTTACATCAAAACCAAGGGCATCATG 46242
|| |||| || ||||| ||||| ||||||| | |||| | ||| | |||
Sbjct 1947695 GGTATCTTCTTCAGCGGCAGCTTTGCGTCCATCTTCTGGCTCAAGAAGCGTGGCCTTATG 1947636
Query 46243 CCCGGCCTGACGTTTAGCAACGAGCTGATATCGCGCGACGAGGGCCTGCAT 46293
|| || || || || ||||||||||| ||| | |||||||| |||||
Sbjct 1947635 CCGGGTCTTACCTTCTCGAACGAGCTGATTTCGAGGGACGAGGGATTGCAT 1947585
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 471874907360640
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