Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Anopheles_20stephensi_20[genbank_20GCA_5F000300775.2_202013-07-19] 23,371 sequences; 221,324,304 total letters Query= NC_007921.1 Length=147544 Score E Sequences producing significant alignments: (Bits) Value seq59 336 2e-87 seq6 159 3e-34 seq57 143 3e-29 seq1 120 3e-22 seq20 116 3e-21 seq24 87.8 2e-12 >seq59 Length=1145648 Score = 336 bits (372), Expect = 2e-87 Identities = 995/1511 (66%), Gaps = 40/1511 (3%) Strand=Plus/Plus Query 145055 TGATTGACGACCTGAAACTCGCCGGCCAACACACGACGCAAATACACGTTAGACGTGAAG 145114 || || || |||||||||||||||| | ||||| || || ||||| |||||| | Sbjct 141081 TGGTTCACCACCTGAAACTCGCCGGAAAGTACACGCCGATTGTAAACGTTGGACGTGTAC 141140 Query 145115 GGTTCAAAAGACTCGTTATTGCCCAGGATTTGAGCGGTCGTTGCGGTGGGCATGTACGCC 145174 ||||| || |||||||| || |||| |||||| || |||| ||||| ||||| ||| Sbjct 141141 GGTTCGAAGGACTCGTTGTTACCCAAGATTTGTGCCGTCGAAGCGGTAGGCATCGGTGCC 141200 Query 145175 ACCAATAATGAATTGCGCAGGCCGTGCTTCTTGATGTCTTCCTTTAGCGTACCCCAATCC 145234 | || | |||||||| | ||||||||| || | |||||| | | |||||| | Sbjct 141201 AACAGCAGCGAATTGCGGATGCCGTGCTTTGCAATTTTTTCCTTCAACTCGGCCCAATTC 141260 Query 145235 CATAGCGAAGTCGGCCTCACGTCCCACATGTCGTACTGCAAAATGCCCTCGCTGGCGGGG 145294 || || | ||| | | |||||| |||||||||| ||||| | ||| | || Sbjct 141261 CAAAGATCCGACGGTTCCTTCTTCCACATTTCGTACTGCAGGATGCCTTTGCTTACCGGA 141320 Query 145295 CTGCCTT-GAAAG----GAACTGTAACTGCCCCAAGTTTTGGCGAGCTCGCAACTCGCCT 145349 || |||| | | | | || || | | | | | ||| | ||| || ||||| | Sbjct 141321 CTCCCTTCGTACGTTTCGTACGGT--CCGTCGCGGGC---GGCCAACTCACAGCTCGCTT 141375 Query 145350 CCAGAGCGCCGAAATAAATTGTCTCGGCAATTTGCCTGTTGAGCAGCATCGCTTCATCGC 145409 ||| || ||| | || ||||| ||| |||||| ||| ||| || || |||| Sbjct 141376 CCAATGCTCCGTAGTAGATTGTTTCGAAAATTTGTTGGTTCAGCTTTTGGGCCTCCTCGC 141435 Query 145410 TCTCGTACGGCATGCGCAGCAGTACAAAAGCATCGGCGAGCCCCTGTATTCCCACGCCGA 145469 | |||||||| ||||| || | || |||||||| | ||||| | || | |||| Sbjct 141436 TTTCGTACGGATAGCGCATCAAAATGAACGCATCGGCCATGCCCTGAACACCGATACCGA 141495 Query 145470 TGGGCCGATGTTTCATGTTG---CTCATCCTCGCCG--ACTCGATAGGATATCGATTACG 145524 | |||| || ||||||| | | || | ||| ||| ||||| | | ||| Sbjct 141496 TCGGCCTGTGCCGCATGTTGGAGCGCTTCGCCTCCGGTACTGGATAGTA----GTTTATA 141551 Query 145525 GTCGATAATTTTATTCAAGTTTCGCACTACTACCTTTGTAATGTGCCGCAACTTTTCAAA 145584 ||||||||||| |||| || ||| | | ||| | | | | || ||| |||| Sbjct 141552 -TCGATAATTTTGTTCAGATTGCGCGTCAAAATCTTCGCGACATCCTTCAGCTTGGCAAA 141610 Query 145585 GTCAAACCGAGCCTCGTCAACGACCACACAGCTATTGACGGCGATCGACGCCAAATTACA 145644 ||| || | | ||| |||| | | || | |||||||| |||||||| || Sbjct 141611 GTCGTAC---GTTTTGTCCGGTTTCACAAACATGTTCAGCGCGATCGAGGCCAAATTGCA 141667 Query 145645 AACTGCCGTCTCCTCGG-CGTCGCTGTATTGTACGATCTCGGCGCACAAATTGCTACATT 145703 || || | || || || || ||| | || ||||||| |||| |||| ||| | Sbjct 141668 CACCGCTATTTCATCCTTCGACGA-GTACTCCACTATCTCGGTACACAGATTGGAACACT 141726 Query 145704 TGATGGTTCCCAGATTTTGCTGATTACTTTTCCTGTTGCACGCGTCCTTGTAGAGCATGT 145763 | ||||| || | || |||||||| || || | ||||||||| |||||||| ||||||| Sbjct 141727 TTATGGTGCCGATGTTCTGCTGATTGCTCTTGCGGTTGCACGCATCCTTGTACAGCATGT 141786 Query 145764 ACGGTCCGCCAGTCTCCACCTGCGTCTCCACGAT--AAAACGGTGCAAGTCCTGCGCACG 145821 |||| |||| || |||||||||| || | ||| |||| | | |||||| || Sbjct 141787 ACGGAACGCCCGTTTCCACCTGCGATTCGATGATGGCAAACCAT--AGGTCCTGTGCCTT 141844 Query 145822 CACCTGCTGCTGGTAGCGGCCCTCTTCTTCGTATTTCCTGTAGAGCTCCTCAAACGCGGA 145881 |||||| | | || ||||| | ||||| |||| |||| ||| ||| | Sbjct 141845 CACCTGGCGTATAAATCGACCCTCCTGCTCGTACCCAGTGTACAGCTTCTCGAACTCTTC 141904 Query 145882 ACCGTAGCAATCGGACAGGCCGGGACACTTGTTGGGACACATCAGCGACCATACGCCGTT 145941 || | || | || ||||| || | || || |||||||| ||| | |||| Sbjct 141905 GCCCCAAGTGTCAGCCAATCCGGGGCAGTCGTGTGGGCACATCAGGCTCCACATTTCGTT 141964 Query 145942 GGCGTTGACGCGCTCCATAAACAAATCTGGCACCCACAGCGCGTACATCAAGTCGCGCGC 146001 || | || |||| ||| |||| ||| || | |||||| ||||| | || |||||| || Sbjct 141965 CGCCTCCACACGCTGCATGAACAGATCCGGGATCCACAGGGCGTAGAACATGTCGCGGGC 142024 Query 146002 TTTGCA-ATCCTCAGCACCCATGTTTCGCTTCAAATTAAGCACACT-ATAGATGTCCGCG 146059 ||| ||||| || ||||| ||||| || || | ||| | || ||| || Sbjct 142025 -ACGCACCTCCTCCTTGCCGGTGTTTTTCTTCAGATCCAG-AAACTCGAATATATCCCCG 142082 Query 146060 TGCCACGGTTCAATATAGACGGCGAGGGCTCCTTTTCG---TTTGCCACCCTGGTCCACG 146116 ||||| ||||| | |||| ||| | ||| || || ||||||||||| |||||| Sbjct 142083 TGCCATGGTTCGAGGTAGATGGCAAAGGCGCCGGGCCGCTTGTTGCCACCCTGATCCACG 142142 Query 146117 TGACGTACCATGTTGTTAAAGACGCGCACCATGGGCTCGACGCCGCTGGCTACGCCGTTC 146176 | || || ||||||| | ||||||| ||| ||| | | ||| | | | || ||| Sbjct 142143 TACCGGGCCGTGTTGTTGTAAACGCGCAGCATCGGCACCAACCCGTTCGAAATCCCATTC 142202 Query 146177 GTAGAGTTTATTCTGGTGCCGCGGGAGCGCACGCAATGAACATTCACGCCGAGACCGCCG 146236 || | || || || || ||| | ||| || || |||| |||| ||||||| Sbjct 142203 GTGCCGGAGATGTACGTTCCTTTGGCGCGAATGCAGTGCACGTTCAGCCCGATACCGCCG 142262 Query 146237 CCGTACTTGGATATAGCGGCGCAGTCGCCGAGCGTCTCGTAGATGCCGTCAATGCTATCG 146296 | | ||||| || || || | ||||| ||||| || || ||||| || ||| Sbjct 142263 GCCGATTTGGAAATCAGTGCACACTGCTTTAGCGTATCGTAAATACCCTCAATACTGTCG 142322 Query 146297 CTTCGA-ATGCCGAGCAGAAAGCACGAGCACATCTGCGCCATCGGCGTCCCCGCCGAGAA 146355 | ||| ||| ||||||||||| || | | ||||| | |||| | |||| || Sbjct 142323 -TCCGACATGGTAAGCAGAAAGCAAGACGAAAGCTGCGGACGCTGCGTAGCGGCCGCAAA 142381 Query 146356 CAACGTCGGGCTCGCGTGCGTAAA-CATTTTTCGGCTCATCATCCGATACGTTTCGATAG 146414 || ||||| || || ||||| | |||| | || ||||| ||||| | Sbjct 142382 CATGGTCGGTGAGGCATGGGTAAAGTAGCGCTCGG-AAAGCAGATTGTACGTCTCGATGG 142440 Query 146415 CGTCTTGAATGTCGTCGCCATGAATGCCCAAAGCGACGCGCATGAGCATGTGTTGGGGCC 146474 | | | |||||| || || ||||| || | || |||||||| ||||||||||| || | Sbjct 142441 CAGCATCAATGTCTTCACCGTGAATACCGATGGCAACGCGCATCAGCATGTGTTGCGGTC 142500 Query 146475 GCTCCGCCACTTGATTGTCAATCTTTAACAAATAGCCGTTCTCCAGGGTTTTGTATCCGA 146534 ||||| | | | | | ||||| | ||||||| |||||| |||||| | |||| Sbjct 142501 GCTCCACAATCTTACCCTTGATCTTCAGCAAATAGGAACGCTCCAGTGTTTTGAAGCCGA 142560 Query 146535 AAAATTTGTAC 146545 || | |||||| Sbjct 142561 AATAGTTGTAC 142571 >seq6 Length=4219845 Score = 159 bits (176), Expect = 3e-34 Identities = 172/228 (75%), Gaps = 0/228 (0%) Strand=Plus/Plus Query 131007 GCCACCGCGCAAACGCAGCACTAAATGTATGGTCGACTCCTTTTGAATGTTGTAATCGCT 131066 ||||||||||| || ||||| | ||| | |||||||||||| || |||||||| ||| Sbjct 2100918 GCCACCGCGCAGGCGAAGCACCAGATGAAGGGTCGACTCCTTCTGGATGTTGTAGTCGGA 2100977 Query 131067 CATGGTGCGCGAGTCCTCTAGCTGCTTGCCTGCGTAGATTAAACGCTGCTGGTCCGGAGG 131126 || |||||| |||||| |||||||| || ||| |||| | ||||||||| ||||| || Sbjct 2100978 CAGGGTGCGTCCGTCCTCCAGCTGCTTACCGGCGAAGATCAGACGCTGCTGATCCGGCGG 2101037 Query 131127 GATTCCTTCTTTGTCGGTGATTTTCTGCTTGAGCTGCTCCACAGTATCGGTGGACTCGAT 131186 ||| || || ||||| ||| ||| ||| | | ||| | ||||| | | ||||| Sbjct 2101038 GATGCCCTCCTTGTCCTGGATCTTCGCCTTCACATTCTCGATCGTATCCGATGGCTCGAC 2101097 Query 131187 GTCGACGGTAACGGTTTTACCGGTTAGAGTTTTTACGAAAATCTGCAT 131234 || | |||| ||| ||||| || || ||||| ||||| |||||||| Sbjct 2101098 CTCAAGAGTAATGGTCTTACCCGTGAGGGTTTTGACGAAGATCTGCAT 2101145 >seq57 Length=1190389 Score = 143 bits (158), Expect = 3e-29 Identities = 169/229 (74%), Gaps = 0/229 (0%) Strand=Plus/Plus Query 131008 CCACCGCGCAAACGCAGCACTAAATGTATGGTCGACTCCTTTTGAATGTTGTAATCGCTC 131067 |||||||| | |||||||| | ||| | ||| || ||||| ||||||||||| || | Sbjct 631298 CCACCGCGGAGTCGCAGCACCAGATGAAGGGTAGATTCCTTCTGAATGTTGTAGTCCGAC 631357 Query 131068 ATGGTGCGCGAGTCCTCTAGCTGCTTGCCTGCGTAGATTAAACGCTGCTGGTCCGGAGGG 131127 | |||||| ||||| ||||||||||| ||| |||| | ||||||||| || ||||| Sbjct 631358 AGGGTGCGACCATCCTCCAGCTGCTTGCCGGCGAAGATGAGACGCTGCTGATCTGGAGGA 631417 Query 131128 ATTCCTTCTTTGTCGGTGATTTTCTGCTTGAGCTGCTCCACAGTATCGGTGGACTCGATG 131187 |||||||| || || ||| || ||| | | ||| | || || | | ||||| Sbjct 631418 ATTCCTTCCTTATCCTGGATCTTGGCCTTCACATTCTCGATCGTGTCCGAAGGCTCGACC 631477 Query 131188 TCGACGGTAACGGTTTTACCGGTTAGAGTTTTTACGAAAATCTGCATGA 131236 || | || | ||| || ||||| || ||||| |||||||||||||||| Sbjct 631478 TCAAGTGTGATGGTCTTGCCGGTGAGTGTTTTCACGAAAATCTGCATGA 631526 >seq1 Length=5975090 Score = 120 bits (132), Expect = 3e-22 Identities = 164/229 (72%), Gaps = 0/229 (0%) Strand=Plus/Minus Query 131007 GCCACCGCGCAAACGCAGCACTAAATGTATGGTCGACTCCTTTTGAATGTTGTAATCGCT 131066 |||||| |||| ||| || || | ||| | ||| || ||||| || ||||| || || Sbjct 5043161 GCCACCACGCAGACGAAGGACCAGATGGAGGGTGGATTCCTTCTGGATGTTATAGTCCGA 5043102 Query 131067 CATGGTGCGCGAGTCCTCTAGCTGCTTGCCTGCGTAGATTAAACGCTGCTGGTCCGGAGG 131126 || |||||| || || ||||||||||| || |||| | ||||||||| || || || Sbjct 5043101 CAGGGTGCGGCCATCTTCCAGCTGCTTGCCGGCAAAGATCAGACGCTGCTGATCTGGCGG 5043042 Query 131127 GATTCCTTCTTTGTCGGTGATTTTCTGCTTGAGCTGCTCCACAGTATCGGTGGACTCGAT 131186 |||||| || ||||| || || ||| | | ||| | || |||| | ||| | Sbjct 5043041 GATTCCCTCCTTGTCCTGAATCTTGGCCTTCACATTCTCGATGGTGTCGGATGGCTCAAC 5042982 Query 131187 GTCGACGGTAACGGTTTTACCGGTTAGAGTTTTTACGAAAATCTGCATG 131235 |||| ||| | ||| || ||||| ||||| || ||||| ||||||||| Sbjct 5042981 CTCGAGGGTGATGGTCTTTCCGGTCAGAGTCTTGACGAAGATCTGCATG 5042933 Score = 118 bits (130), Expect = 1e-21 Identities = 163/228 (71%), Gaps = 0/228 (0%) Strand=Plus/Minus Query 131008 CCACCGCGCAAACGCAGCACTAAATGTATGGTCGACTCCTTTTGAATGTTGTAATCGCTC 131067 ||||| |||| ||| || || | ||| | ||| || ||||| || ||||| || || | Sbjct 5043388 CCACCACGCAGACGAAGGACCAGATGGAGGGTGGATTCCTTCTGGATGTTATAGTCCGAC 5043329 Query 131068 ATGGTGCGCGAGTCCTCTAGCTGCTTGCCTGCGTAGATTAAACGCTGCTGGTCCGGAGGG 131127 | |||||| || || ||||||||||| || |||| | ||||||||| || || ||| Sbjct 5043328 AGGGTGCGGCCATCTTCCAGCTGCTTGCCAGCAAAGATCAGACGCTGCTGATCTGGCGGG 5043269 Query 131128 ATTCCTTCTTTGTCGGTGATTTTCTGCTTGAGCTGCTCCACAGTATCGGTGGACTCGATG 131187 ||||| || ||||| || || ||| | | ||| | || |||| | ||| | Sbjct 5043268 ATTCCCTCCTTGTCCTGAATCTTGGCCTTCACATTCTCGATGGTGTCGGATGGCTCAACC 5043209 Query 131188 TCGACGGTAACGGTTTTACCGGTTAGAGTTTTTACGAAAATCTGCATG 131235 |||| ||| | ||| || ||||| ||||| || ||||| ||||||||| Sbjct 5043208 TCGAGGGTGATGGTCTTTCCGGTCAGAGTCTTGACGAAGATCTGCATG 5043161 >seq20 Length=2346360 Score = 116 bits (128), Expect = 3e-21 Identities = 162/227 (71%), Gaps = 0/227 (0%) Strand=Plus/Plus Query 131008 CCACCGCGCAAACGCAGCACTAAATGTATGGTCGACTCCTTTTGAATGTTGTAATCGCTC 131067 || || |||| ||| || || || || | |||||||||||| || |||||||| ||| | Sbjct 834518 CCTCCACGCAGACGGAGGACCAAGTGCAGGGTCGACTCCTTCTGGATGTTGTAGTCGGAC 834577 Query 131068 ATGGTGCGCGAGTCCTCTAGCTGCTTGCCTGCGTAGATTAAACGCTGCTGGTCCGGAGGG 131127 | || || |||||| |||||||| || ||| |||| ||||||||||| || ||||| Sbjct 834578 AGAGTACGTCCGTCCTCCAGCTGCTTTCCGGCGAAGATCAAACGCTGCTGATCTGGAGGA 834637 Query 131128 ATTCCTTCTTTGTCGGTGATTTTCTGCTTGAGCTGCTCCACAGTATCGGTGGACTCGATG 131187 || || || ||||| ||| || ||| | | ||| | || || | | ||||| Sbjct 834638 ATACCCTCCTTGTCCTGGATCTTAGCCTTCACGTTCTCGATCGTGTCCGACGGCTCGACC 834697 Query 131188 TCGACGGTAACGGTTTTACCGGTTAGAGTTTTTACGAAAATCTGCAT 131234 || | || | ||| || || || || || || ||||| |||||||| Sbjct 834698 TCCAGCGTGATGGTCTTGCCAGTCAGCGTCTTCACGAAGATCTGCAT 834744 Score = 113 bits (124), Expect = 4e-20 Identities = 161/227 (71%), Gaps = 0/227 (0%) Strand=Plus/Plus Query 131008 CCACCGCGCAAACGCAGCACTAAATGTATGGTCGACTCCTTTTGAATGTTGTAATCGCTC 131067 || ||||| | || || || || || | |||||||||||| || |||||||| ||| | Sbjct 834290 CCCCCGCGAAGTCGAAGAACCAAGTGCAGGGTCGACTCCTTCTGGATGTTGTAGTCGGAC 834349 Query 131068 ATGGTGCGCGAGTCCTCTAGCTGCTTGCCTGCGTAGATTAAACGCTGCTGGTCCGGAGGG 131127 | || || |||||| |||||||| || ||| |||| ||||||||||| || ||||| Sbjct 834350 AGAGTACGACCGTCCTCCAGCTGCTTTCCGGCGAAGATCAAACGCTGCTGATCTGGAGGA 834409 Query 131128 ATTCCTTCTTTGTCGGTGATTTTCTGCTTGAGCTGCTCCACAGTATCGGTGGACTCGATG 131187 || || || ||||| ||| || ||| | | ||| | || || | | ||||| Sbjct 834410 ATACCCTCCTTGTCCTGGATCTTAGCCTTCACGTTCTCGATCGTGTCCGACGGCTCGACC 834469 Query 131188 TCGACGGTAACGGTTTTACCGGTTAGAGTTTTTACGAAAATCTGCAT 131234 || | || | ||| || || || || || || ||||| |||||||| Sbjct 834470 TCCAGCGTGATGGTCTTGCCAGTCAGCGTCTTCACGAAGATCTGCAT 834516 Score = 113 bits (124), Expect = 4e-20 Identities = 161/227 (71%), Gaps = 0/227 (0%) Strand=Plus/Plus Query 131008 CCACCGCGCAAACGCAGCACTAAATGTATGGTCGACTCCTTTTGAATGTTGTAATCGCTC 131067 || || |||| ||| || || || || | |||||||||||| || |||||||| ||| | Sbjct 834746 CCTCCACGCAGACGGAGGACCAAGTGCAGGGTCGACTCCTTCTGGATGTTGTAGTCGGAC 834805 Query 131068 ATGGTGCGCGAGTCCTCTAGCTGCTTGCCTGCGTAGATTAAACGCTGCTGGTCCGGAGGG 131127 | || || ||||| |||||||| || ||| |||| ||||||||||| || ||||| Sbjct 834806 AGAGTACGACCATCCTCCAGCTGCTTTCCGGCGAAGATCAAACGCTGCTGATCTGGAGGA 834865 Query 131128 ATTCCTTCTTTGTCGGTGATTTTCTGCTTGAGCTGCTCCACAGTATCGGTGGACTCGATG 131187 || || || ||||| ||| || ||| | | ||| | || || | | ||||| Sbjct 834866 ATACCCTCCTTGTCCTGGATCTTAGCCTTCACGTTCTCGATCGTGTCCGATGGCTCGACC 834925 Query 131188 TCGACGGTAACGGTTTTACCGGTTAGAGTTTTTACGAAAATCTGCAT 131234 || | || | ||| || || || || || || ||||| |||||||| Sbjct 834926 TCCAGCGTGATGGTCTTGCCAGTCAGCGTCTTCACGAAGATCTGCAT 834972 >seq24 Length=2206587 Score = 87.8 bits (96), Expect = 2e-12 Identities = 158/231 (68%), Gaps = 0/231 (0%) Strand=Plus/Minus Query 46063 CTGCTTAATGCGTTTGAACGTATGCCGTGCGTGCGCAAGAAAACCGACTGGGCGATGAAG 46122 ||| ||||||| | ||| | ||||||||| ||||| | ||||||||| | || Sbjct 1947815 CTGTTTAATGCCATCGAAACGCTACCGTGCGTGAAGAAGAAGGCAGACTGGGCGCTTAAC 1947756 Query 46123 TGGATCAACAGCAGCACCGCGACTTTCGCCGAGCGTATGGTGGCCTTTGCGATTGTGGAG 46182 |||||| |||| | || | || | ||||||| |||| || ||||| || ||| Sbjct 1947755 TGGATCTCGAGCAAGAAGGCTAACTTTGGCGAGCGTGTGGTCGCATTTGCTGCCGTCGAG 1947696 Query 46183 GGCGTCtttttttCTGGCAGTTTTGCCGCCATCTTTTACATCAAAACCAAGGGCATCATG 46242 || |||| || ||||| ||||| ||||||| | |||| | ||| | ||| Sbjct 1947695 GGTATCTTCTTCAGCGGCAGCTTTGCGTCCATCTTCTGGCTCAAGAAGCGTGGCCTTATG 1947636 Query 46243 CCCGGCCTGACGTTTAGCAACGAGCTGATATCGCGCGACGAGGGCCTGCAT 46293 || || || || || ||||||||||| ||| | |||||||| ||||| Sbjct 1947635 CCGGGTCTTACCTTCTCGAACGAGCTGATTTCGAGGGACGAGGGATTGCAT 1947585 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 471874907360640