Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Anopheles_20stephensi_20[genbank_20GCA_5F000300775.2_202013-07-19] 23,371 sequences; 221,324,304 total letters Query= NC_008035.3 Length=126629 Score E Sequences producing significant alignments: (Bits) Value seq1 95.1 1e-14 seq20 84.2 2e-11 seq6 84.2 2e-11 >seq1 Length=5975090 Score = 95.1 bits (104), Expect = 1e-14 Identities = 148/212 (70%), Gaps = 0/212 (0%) Strand=Plus/Minus Query 16724 AGTACCATATGCAGCGTGGACTCCTTTTGTATGTTGTAGTCGGCCATGGTTTTGGCGTCC 16783 || |||| ||| || ||||| ||||| || ||||| ||||| | || ||| | | || Sbjct 5043145 AGGACCAGATGGAGGGTGGATTCCTTCTGGATGTTATAGTCCGACAGGGTGCGGCCATCT 5043086 Query 16784 TCCAATTGTTTGCCCGCATAAATAAGCCGCTGTTGGTCCACAGGCACGCCCTCTTTGTCG 16843 |||| || ||||| ||| | || || ||||| || || || | ||||| ||||| Sbjct 5043085 TCCAGCTGCTTGCCGGCAAAGATCAGACGCTGCTGATCTGGCGGGATTCCCTCCTTGTCC 5043026 Query 16844 GCAATTTGCTGCTTCACCTGGCCCACAGTGTCGCCGGGCTCCGTTTCCACGGTGATGGTT 16903 ||| | |||||| | | | |||||| ||||| || | ||||||||| Sbjct 5043025 TGAATCTTGGCCTTCACATTCTCGATGGTGTCGGATGGCTCAACCTCGAGGGTGATGGTC 5042966 Query 16904 TTTCCGGTCAGCGTTTTGACAAAAATCTGCAT 16935 ||||||||||| || ||||| || |||||||| Sbjct 5042965 TTTCCGGTCAGAGTCTTGACGAAGATCTGCAT 5042934 Score = 95.1 bits (104), Expect = 1e-14 Identities = 148/212 (70%), Gaps = 0/212 (0%) Strand=Plus/Minus Query 16724 AGTACCATATGCAGCGTGGACTCCTTTTGTATGTTGTAGTCGGCCATGGTTTTGGCGTCC 16783 || |||| ||| || ||||| ||||| || ||||| ||||| | || ||| | | || Sbjct 5043373 AGGACCAGATGGAGGGTGGATTCCTTCTGGATGTTATAGTCCGACAGGGTGCGGCCATCT 5043314 Query 16784 TCCAATTGTTTGCCCGCATAAATAAGCCGCTGTTGGTCCACAGGCACGCCCTCTTTGTCG 16843 |||| || ||||| ||| | || || ||||| || || || | ||||| ||||| Sbjct 5043313 TCCAGCTGCTTGCCAGCAAAGATCAGACGCTGCTGATCTGGCGGGATTCCCTCCTTGTCC 5043254 Query 16844 GCAATTTGCTGCTTCACCTGGCCCACAGTGTCGCCGGGCTCCGTTTCCACGGTGATGGTT 16903 ||| | |||||| | | | |||||| ||||| || | ||||||||| Sbjct 5043253 TGAATCTTGGCCTTCACATTCTCGATGGTGTCGGATGGCTCAACCTCGAGGGTGATGGTC 5043194 Query 16904 TTTCCGGTCAGCGTTTTGACAAAAATCTGCAT 16935 ||||||||||| || ||||| || |||||||| Sbjct 5043193 TTTCCGGTCAGAGTCTTGACGAAGATCTGCAT 5043162 Score = 86.0 bits (94), Expect = 5e-12 Identities = 151/220 (69%), Gaps = 0/220 (0%) Strand=Plus/Minus Query 16724 AGTACCATATGCAGCGTGGACTCCTTTTGTATGTTGTAGTCGGCCATGGTTTTGGCGTCC 16783 || |||| ||| || ||||| ||||| || ||||| ||||| | || ||| | | || Sbjct 5042917 AGGACCAGATGGAGGGTGGATTCCTTCTGGATGTTATAGTCCGACAGGGTGCGGCCATCT 5042858 Query 16784 TCCAATTGTTTGCCCGCATAAATAAGCCGCTGTTGGTCCACAGGCACGCCCTCTTTGTCG 16843 |||| || || || ||| | || || ||||| || || || | ||||| ||||| Sbjct 5042857 TCCAGCTGCTTACCAGCAAAGATCAGACGCTGCTGATCTGGCGGGATTCCCTCCTTGTCC 5042798 Query 16844 GCAATTTGCTGCTTCACCTGGCCCACAGTGTCGCCGGGCTCCGTTTCCACGGTGATGGTT 16903 ||| | |||||| | | | |||||| ||||| || | |||||| || Sbjct 5042797 TGAATCTTGGCCTTCACATTCTCGATGGTGTCGGATGGCTCAACCTCAAGGGTGATAGTC 5042738 Query 16904 TTTCCGGTCAGCGTTTTGACAAAAATCTGCATTTTGTAGC 16943 ||||||||||| || ||||| || || ||||| ||| ||| Sbjct 5042737 TTTCCGGTCAGAGTCTTGACGAAGATTTGCATGTTGAAGC 5042698 >seq20 Length=2346360 Score = 84.2 bits (92), Expect = 2e-11 Identities = 157/229 (69%), Gaps = 4/229 (2%) Strand=Plus/Plus Query 16709 CCTCCTCGTAGCCTCAGTACCATATGCAGCGTGGACTCCTTTTGTATGTTGTAGTCGGCC 16768 ||||| || || | || |||| ||||| || |||||||| || ||||||||||||| | Sbjct 834518 CCTCCACGCAGACGGAGGACCAAGTGCAGGGTCGACTCCTTCTGGATGTTGTAGTCGGAC 834577 Query 16769 ATGGTTTTGGCGTCCTCCAATTGTTTGCCCGCATAAATAAGCCGCTGTTGGTCCACAGGC 16828 | || ||||||||| || || || || | || | ||||| || || ||| Sbjct 834578 AGAGTACGTCCGTCCTCCAGCTGCTTTCCGGCGAAGATCAAACGCTGCTGATCTGGAGGA 834637 Query 16829 ACGCCCTCTTTGTC--GGCAATTTGCTGCTTCACCTGGCCCACAGTGTCGCCGGGCTCCG 16886 | ||||| ||||| || || || |||||| | | | ||||| ||||| Sbjct 834638 ATACCCTCCTTGTCCTGGATCTTAGC--CTTCACGTTCTCGATCGTGTCCGACGGCTCGA 834695 Query 16887 TTTCCACGGTGATGGTTTTTCCGGTCAGCGTTTTGACAAAAATCTGCAT 16935 |||| |||||||| || || |||||||| || || || |||||||| Sbjct 834696 CCTCCAGCGTGATGGTCTTGCCAGTCAGCGTCTTCACGAAGATCTGCAT 834744 >seq6 Length=4219845 Score = 84.2 bits (92), Expect = 2e-11 Identities = 148/216 (69%), Gaps = 0/216 (0%) Strand=Plus/Plus Query 16724 AGTACCATATGCAGCGTGGACTCCTTTTGTATGTTGTAGTCGGCCATGGTTTTGGCGTCC 16783 || |||| ||| || || |||||||| || ||||||||||||| || ||| ||||| Sbjct 2100934 AGCACCAGATGAAGGGTCGACTCCTTCTGGATGTTGTAGTCGGACAGGGTGCGTCCGTCC 2100993 Query 16784 TCCAATTGTTTGCCCGCATAAATAAGCCGCTGTTGGTCCACAGGCACGCCCTCTTTGTCG 16843 |||| || || || || | || || ||||| || ||| || | |||||| ||||| Sbjct 2100994 TCCAGCTGCTTACCGGCGAAGATCAGACGCTGCTGATCCGGCGGGATGCCCTCCTTGTCC 2101053 Query 16844 GCAATTTGCTGCTTCACCTGGCCCACAGTGTCGCCGGGCTCCGTTTCCACGGTGATGGTT 16903 || | | |||||| | | | || || ||||| || | || ||||| Sbjct 2101054 TGGATCTTCGCCTTCACATTCTCGATCGTATCCGATGGCTCGACCTCAAGAGTAATGGTC 2101113 Query 16904 TTTCCGGTCAGCGTTTTGACAAAAATCTGCATTTTG 16939 || || || || |||||||| || |||||||| ||| Sbjct 2101114 TTACCCGTGAGGGTTTTGACGAAGATCTGCATCTTG 2101149 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 404972617139290