Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Anopheles_20stephensi_20[genbank_20GCA_5F000300775.2_202013-07-19] 23,371 sequences; 221,324,304 total letters Query= NC_008168.1 Length=104710 Score E Sequences producing significant alignments: (Bits) Value seq44 158 8e-34 seq17833 140 2e-28 seq213 140 2e-28 seq6 104 2e-17 seq14288 98.7 7e-16 seq4 98.7 7e-16 seq2495 89.7 3e-13 >seq44 Length=1453912 Score = 158 bits (174), Expect = 8e-34 Identities = 162/212 (76%), Gaps = 0/212 (0%) Strand=Plus/Plus Query 6162 ATGGGGACCCTGAACGTAAATCGTAATGTGGCGGACGCGTTCTACCGCTACAAAATGCCG 6221 |||| ||| | ||||| ||||| |||||| | || |||||||| ||||| ||||| Sbjct 803834 ATGGCTACCGTCAACGTGAATCGCAATGTGACCGATATCTTCTACCGGTACAAGATGCCT 803893 Query 6222 CGCATCTGCGCCAAGGTCGAGGGTAAGGGAAACGGTATTAAAACCGTCATTGTCAACATG 6281 |||||| || ||||| |||||||| || ||||| |||||||| || || || |||||| Sbjct 803894 CGCATCAATGCGAAGGTAGAGGGTAAAGGCAACGGCATTAAAACGGTAATCGTGAACATG 803953 Query 6282 CCTGAAGTCGCTAAGGCGCTCGGACGCCCTGCCACCTACCCGACGAAATATTTCGGGTGC 6341 | || || || ||| |||| || ||||| |||||||||||||| |||||||| ||| Sbjct 803954 GCGGAGGTGGCGCGAGCGATCGGTCGTCCTGCAACCTACCCGACGAAGTATTTCGGTTGC 804013 Query 6342 GAACTTGGCGCTCAGACGCAGTTTGATCACAA 6373 || || || || || || || || ||||| || Sbjct 804014 GAGCTAGGAGCCCAAACTCAATTCGATCATAA 804045 Score = 149 bits (164), Expect = 4e-31 Identities = 169/227 (74%), Gaps = 0/227 (0%) Strand=Plus/Plus Query 6375 AACGAGCGCTTCATCGTTAACGGATCGCATAACTCTGCCAAGCTGCAGGACTTACTTGAC 6434 |||||||| ||||| || || |||||||| | | ||||||||||||| | || ||| Sbjct 804248 AACGAGCGTTTCATTGTGAATGGATCGCACGATGCCACCAAGCTGCAGGATCTGCTCGAC 804307 Query 6435 GGCTTTATTCGCAAGTTTGTGCTGTGTCGGGAATGCGATAACCCGGAGACCGAGCTTATT 6494 ||||| || |||||||| || ||||| | ||| ||||| ||||||||||| || || ||| Sbjct 804308 GGCTTCATCCGCAAGTTCGTCCTGTGCCCGGAGTGCGACAACCCGGAGACGGATCTGATT 804367 Query 6495 GTGTCTACCAAGAGAAACACCATCTCTCAGGGCTGCAAAGCGTGCGGTTACCATGGCAAG 6554 || || |||||| || ||||| ||||||||||| |||||||||| || || | Sbjct 804368 GTATCGTCCAAGAAGGGTACGATCTCGCAGGGCTGCAAGGCGTGCGGTTTTCACGGTCCG 804427 Query 6555 CTGGATTTATCACACAAACTCAACACCTTCATACTGAAGAATCCTCC 6601 || || | ||||| | ||||| ||||| | || ||||| || Sbjct 804428 CTCGAGGTGAACCACAAGGTGAACACGTTCATCATCAAAAATCCACC 804474 >seq17833 Length=603 Score = 140 bits (154), Expect = 2e-28 Identities = 88/95 (93%), Gaps = 5/95 (5%) Strand=Plus/Plus Query 25902 AAGCCCGTTCCCTTGGCTGTGGTTTCGCTAGATAGTAGATAGGG-----GGTAATCTCGT 25956 |||||||||||||||||||||||||||||||||||||||||||| || |||||||| Sbjct 97 AAGCCCGTTCCCTTGGCTGTGGTTTCGCTAGATAGTAGATAGGGACAGAGGGAATCTCGT 156 Query 25957 TAATCCTTTCATGCGCGTCACTAATTAGATGACGA 25991 |||||| |||||||||||||||||||||||||||| Sbjct 157 TAATCCATTCATGCGCGTCACTAATTAGATGACGA 191 >seq213 Length=48454 Score = 140 bits (154), Expect = 2e-28 Identities = 88/95 (93%), Gaps = 5/95 (5%) Strand=Plus/Plus Query 25902 AAGCCCGTTCCCTTGGCTGTGGTTTCGCTAGATAGTAGATAGGG-----GGTAATCTCGT 25956 |||||||||||||||||||||||||||||||||||||||||||| || |||||||| Sbjct 5000 AAGCCCGTTCCCTTGGCTGTGGTTTCGCTAGATAGTAGATAGGGACAGAGGGAATCTCGT 5059 Query 25957 TAATCCTTTCATGCGCGTCACTAATTAGATGACGA 25991 |||||| |||||||||||||||||||||||||||| Sbjct 5060 TAATCCATTCATGCGCGTCACTAATTAGATGACGA 5094 >seq6 Length=4219845 Score = 104 bits (114), Expect = 2e-17 Identities = 161/230 (70%), Gaps = 0/230 (0%) Strand=Plus/Plus Query 38091 CCACCTCTCAAACGCAACACCAAATGAAGAGTGCTCTCCTTTTGAATATTGTAATCAGAC 38150 ||||| | || || | ||||| |||||| || |||||| || || ||||| || ||| Sbjct 2100919 CCACCGCGCAGGCGAAGCACCAGATGAAGGGTCGACTCCTTCTGGATGTTGTAGTCGGAC 2100978 Query 38151 AAAACACGTTCGTCGTCTAATTGTTTTCCGGCAAATATTAGGCGTTGTTGATCGGAGGGG 38210 | ||| |||| || | || || ||||| || || || || || ||||| | ||| Sbjct 2100979 AGGGTGCGTCCGTCCTCCAGCTGCTTACCGGCGAAGATCAGACGCTGCTGATCCGGCGGG 2101038 Query 38211 ACGCCTTCTTTGTCCATAATTTTTTGCTTCACATTCTGGACAGTATCTCCACTTTCAACT 38270 | ||| || |||||| || || ||||||||||| || ||||| || || Sbjct 2101039 ATGCCCTCCTTGTCCTGGATCTTCGCCTTCACATTCTCGATCGTATCCGATGGCTCGACC 2101098 Query 38271 TCTAATGTAATAGTTTTACCCGTCAAGGTTTTCACGAATATCTGCATGTT 38320 || | ||||| || |||||||| | |||||| ||||| |||||||| || Sbjct 2101099 TCAAGAGTAATGGTCTTACCCGTGAGGGTTTTGACGAAGATCTGCATCTT 2101148 >seq14288 Length=698 Score = 98.7 bits (108), Expect = 7e-16 Identities = 68/77 (88%), Gaps = 0/77 (0%) Strand=Plus/Minus Query 19947 CTCTCTCTTCAAAGTTCTTTTCAACTTTCCCTCACGGTACTTGTTCGCTATCGGTCTCGC 20006 |||||| |||| ||| |||||||||||||||||||||||||||||||||||||||||| Sbjct 464 CTCTCTATTCAGAGTGCTTTTCAACTTTCCCTCACGGTACTTGTTCGCTATCGGTCTCAT 405 Query 20007 GGTAATATTTAGCCTTA 20023 || |||||||| ||| Sbjct 404 GGCGGTATTTAGCTTTA 388 >seq4 Length=5098044 Score = 98.7 bits (108), Expect = 7e-16 Identities = 68/77 (88%), Gaps = 0/77 (0%) Strand=Plus/Minus Query 19947 CTCTCTCTTCAAAGTTCTTTTCAACTTTCCCTCACGGTACTTGTTCGCTATCGGTCTCGC 20006 |||||| |||| ||| |||||||||||||||||||||||||||||||||||||| |||| Sbjct 839449 CTCTCTATTCAGAGTGCTTTTCAACTTTCCCTCACGGTACTTGTTCGCTATCGGGCTCGT 839390 Query 20007 GGTAATATTTAGCCTTA 20023 || |||||||| ||| Sbjct 839389 GGCGGTATTTAGCTTTA 839373 >seq2495 Length=2024 Score = 89.7 bits (98), Expect = 3e-13 Identities = 54/57 (95%), Gaps = 0/57 (0%) Strand=Plus/Plus Query 19947 CTCTCTCTTCAAAGTTCTTTTCAACTTTCCCTCACGGTACTTGTTCGCTATCGGTCT 20003 |||||| |||| ||| ||||||||||||||||||||||||||||||||||||||||| Sbjct 1308 CTCTCTATTCAGAGTGCTTTTCAACTTTCCCTCACGGTACTTGTTCGCTATCGGTCT 1364 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 334851795628301