Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Anopheles_20stephensi_20[genbank_20GCA_5F000300775.2_202013-07-19]
23,371 sequences; 221,324,304 total letters
Query= NC_008168.1
Length=104710
Score E
Sequences producing significant alignments: (Bits) Value
seq44 158 8e-34
seq17833 140 2e-28
seq213 140 2e-28
seq6 104 2e-17
seq14288 98.7 7e-16
seq4 98.7 7e-16
seq2495 89.7 3e-13
>seq44
Length=1453912
Score = 158 bits (174), Expect = 8e-34
Identities = 162/212 (76%), Gaps = 0/212 (0%)
Strand=Plus/Plus
Query 6162 ATGGGGACCCTGAACGTAAATCGTAATGTGGCGGACGCGTTCTACCGCTACAAAATGCCG 6221
|||| ||| | ||||| ||||| |||||| | || |||||||| ||||| |||||
Sbjct 803834 ATGGCTACCGTCAACGTGAATCGCAATGTGACCGATATCTTCTACCGGTACAAGATGCCT 803893
Query 6222 CGCATCTGCGCCAAGGTCGAGGGTAAGGGAAACGGTATTAAAACCGTCATTGTCAACATG 6281
|||||| || ||||| |||||||| || ||||| |||||||| || || || ||||||
Sbjct 803894 CGCATCAATGCGAAGGTAGAGGGTAAAGGCAACGGCATTAAAACGGTAATCGTGAACATG 803953
Query 6282 CCTGAAGTCGCTAAGGCGCTCGGACGCCCTGCCACCTACCCGACGAAATATTTCGGGTGC 6341
| || || || ||| |||| || ||||| |||||||||||||| |||||||| |||
Sbjct 803954 GCGGAGGTGGCGCGAGCGATCGGTCGTCCTGCAACCTACCCGACGAAGTATTTCGGTTGC 804013
Query 6342 GAACTTGGCGCTCAGACGCAGTTTGATCACAA 6373
|| || || || || || || || ||||| ||
Sbjct 804014 GAGCTAGGAGCCCAAACTCAATTCGATCATAA 804045
Score = 149 bits (164), Expect = 4e-31
Identities = 169/227 (74%), Gaps = 0/227 (0%)
Strand=Plus/Plus
Query 6375 AACGAGCGCTTCATCGTTAACGGATCGCATAACTCTGCCAAGCTGCAGGACTTACTTGAC 6434
|||||||| ||||| || || |||||||| | | ||||||||||||| | || |||
Sbjct 804248 AACGAGCGTTTCATTGTGAATGGATCGCACGATGCCACCAAGCTGCAGGATCTGCTCGAC 804307
Query 6435 GGCTTTATTCGCAAGTTTGTGCTGTGTCGGGAATGCGATAACCCGGAGACCGAGCTTATT 6494
||||| || |||||||| || ||||| | ||| ||||| ||||||||||| || || |||
Sbjct 804308 GGCTTCATCCGCAAGTTCGTCCTGTGCCCGGAGTGCGACAACCCGGAGACGGATCTGATT 804367
Query 6495 GTGTCTACCAAGAGAAACACCATCTCTCAGGGCTGCAAAGCGTGCGGTTACCATGGCAAG 6554
|| || |||||| || ||||| ||||||||||| |||||||||| || || |
Sbjct 804368 GTATCGTCCAAGAAGGGTACGATCTCGCAGGGCTGCAAGGCGTGCGGTTTTCACGGTCCG 804427
Query 6555 CTGGATTTATCACACAAACTCAACACCTTCATACTGAAGAATCCTCC 6601
|| || | ||||| | ||||| ||||| | || ||||| ||
Sbjct 804428 CTCGAGGTGAACCACAAGGTGAACACGTTCATCATCAAAAATCCACC 804474
>seq17833
Length=603
Score = 140 bits (154), Expect = 2e-28
Identities = 88/95 (93%), Gaps = 5/95 (5%)
Strand=Plus/Plus
Query 25902 AAGCCCGTTCCCTTGGCTGTGGTTTCGCTAGATAGTAGATAGGG-----GGTAATCTCGT 25956
|||||||||||||||||||||||||||||||||||||||||||| || ||||||||
Sbjct 97 AAGCCCGTTCCCTTGGCTGTGGTTTCGCTAGATAGTAGATAGGGACAGAGGGAATCTCGT 156
Query 25957 TAATCCTTTCATGCGCGTCACTAATTAGATGACGA 25991
|||||| ||||||||||||||||||||||||||||
Sbjct 157 TAATCCATTCATGCGCGTCACTAATTAGATGACGA 191
>seq213
Length=48454
Score = 140 bits (154), Expect = 2e-28
Identities = 88/95 (93%), Gaps = 5/95 (5%)
Strand=Plus/Plus
Query 25902 AAGCCCGTTCCCTTGGCTGTGGTTTCGCTAGATAGTAGATAGGG-----GGTAATCTCGT 25956
|||||||||||||||||||||||||||||||||||||||||||| || ||||||||
Sbjct 5000 AAGCCCGTTCCCTTGGCTGTGGTTTCGCTAGATAGTAGATAGGGACAGAGGGAATCTCGT 5059
Query 25957 TAATCCTTTCATGCGCGTCACTAATTAGATGACGA 25991
|||||| ||||||||||||||||||||||||||||
Sbjct 5060 TAATCCATTCATGCGCGTCACTAATTAGATGACGA 5094
>seq6
Length=4219845
Score = 104 bits (114), Expect = 2e-17
Identities = 161/230 (70%), Gaps = 0/230 (0%)
Strand=Plus/Plus
Query 38091 CCACCTCTCAAACGCAACACCAAATGAAGAGTGCTCTCCTTTTGAATATTGTAATCAGAC 38150
||||| | || || | ||||| |||||| || |||||| || || ||||| || |||
Sbjct 2100919 CCACCGCGCAGGCGAAGCACCAGATGAAGGGTCGACTCCTTCTGGATGTTGTAGTCGGAC 2100978
Query 38151 AAAACACGTTCGTCGTCTAATTGTTTTCCGGCAAATATTAGGCGTTGTTGATCGGAGGGG 38210
| ||| |||| || | || || ||||| || || || || || ||||| | |||
Sbjct 2100979 AGGGTGCGTCCGTCCTCCAGCTGCTTACCGGCGAAGATCAGACGCTGCTGATCCGGCGGG 2101038
Query 38211 ACGCCTTCTTTGTCCATAATTTTTTGCTTCACATTCTGGACAGTATCTCCACTTTCAACT 38270
| ||| || |||||| || || ||||||||||| || ||||| || ||
Sbjct 2101039 ATGCCCTCCTTGTCCTGGATCTTCGCCTTCACATTCTCGATCGTATCCGATGGCTCGACC 2101098
Query 38271 TCTAATGTAATAGTTTTACCCGTCAAGGTTTTCACGAATATCTGCATGTT 38320
|| | ||||| || |||||||| | |||||| ||||| |||||||| ||
Sbjct 2101099 TCAAGAGTAATGGTCTTACCCGTGAGGGTTTTGACGAAGATCTGCATCTT 2101148
>seq14288
Length=698
Score = 98.7 bits (108), Expect = 7e-16
Identities = 68/77 (88%), Gaps = 0/77 (0%)
Strand=Plus/Minus
Query 19947 CTCTCTCTTCAAAGTTCTTTTCAACTTTCCCTCACGGTACTTGTTCGCTATCGGTCTCGC 20006
|||||| |||| ||| ||||||||||||||||||||||||||||||||||||||||||
Sbjct 464 CTCTCTATTCAGAGTGCTTTTCAACTTTCCCTCACGGTACTTGTTCGCTATCGGTCTCAT 405
Query 20007 GGTAATATTTAGCCTTA 20023
|| |||||||| |||
Sbjct 404 GGCGGTATTTAGCTTTA 388
>seq4
Length=5098044
Score = 98.7 bits (108), Expect = 7e-16
Identities = 68/77 (88%), Gaps = 0/77 (0%)
Strand=Plus/Minus
Query 19947 CTCTCTCTTCAAAGTTCTTTTCAACTTTCCCTCACGGTACTTGTTCGCTATCGGTCTCGC 20006
|||||| |||| ||| |||||||||||||||||||||||||||||||||||||| ||||
Sbjct 839449 CTCTCTATTCAGAGTGCTTTTCAACTTTCCCTCACGGTACTTGTTCGCTATCGGGCTCGT 839390
Query 20007 GGTAATATTTAGCCTTA 20023
|| |||||||| |||
Sbjct 839389 GGCGGTATTTAGCTTTA 839373
>seq2495
Length=2024
Score = 89.7 bits (98), Expect = 3e-13
Identities = 54/57 (95%), Gaps = 0/57 (0%)
Strand=Plus/Plus
Query 19947 CTCTCTCTTCAAAGTTCTTTTCAACTTTCCCTCACGGTACTTGTTCGCTATCGGTCT 20003
|||||| |||| ||| |||||||||||||||||||||||||||||||||||||||||
Sbjct 1308 CTCTCTATTCAGAGTGCTTTTCAACTTTCCCTCACGGTACTTGTTCGCTATCGGTCT 1364
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 334851795628301
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |