Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Anopheles_20stephensi_20[genbank_20GCA_5F000300775.2_202013-07-19] 23,371 sequences; 221,324,304 total letters Query= NC_008291.1 Length=198050 Score E Sequences producing significant alignments: (Bits) Value seq59 412 4e-110 seq24 100 4e-16 >seq59 Length=1145648 Score = 412 bits (456), Expect = 4e-110 Identities = 1212/1853 (65%), Gaps = 30/1853 (2%) Strand=Plus/Plus Query 61871 GCGGGTTTCGTACGTAGATAGTACATTCCCGTTTTTAGACCGAGACTCCATCCGTAAAAA 61930 || ||||| || || ||||||||||| |||||||| || || | |||| |||||||| Sbjct 140766 GCCGGTTTTGTTCGCAGATAGTACATGCCCGTTTTCAGTCCCATTTTCCAGCCGTAAAAG 140825 Query 61931 TGCATACTCGTTAGTTTGGAATAACTCGGATCTGCTATATGGATATTCATAGATTGACTT 61990 || || || || ||| ||| |||| || || | || || || | ||||| Sbjct 140826 TGGATCGATGTCAGCTTGCCATAGTTCGGTTCGGCCACGTGTATGTTGAACGATTGCGAC 140885 Query 61991 TGATCGATGAAGGCTCCCCTGTCTGCAGCCATTTTTATAATCGTCTTTTGTGGAATTTCC 62050 |||||||| || || |||| ||| |||||||| || || ||| || | ||| ||| Sbjct 140886 TGATCGATAAACGCACCCCGGTCAGCAGCCATCTTAATGCACGTTTTAACCGAAATCTCC 140945 Query 62051 CAAATAGTTTTATAAAC-TCGCTTAATATCTTCTGGAAGGTTTGTATTCT--GAATGGAT 62107 || | ||||| || | |||| || | |||| | | | || || || |||| ||| Sbjct 140946 CACACCGTTTTGTACAGATCGCGTATTTCCTTCGGTATCGATTCGATGCTTTGAATCGAT 141005 Query 62108 CCACCATCTGCCATAATCCTATTCTTGATCTCATCATTCCATAATTTTCTCTCGGTTAAA 62167 || | | || ||| ||||| || || || ||| | || | || ||| Sbjct 141006 CCGTTGTTGGACAGAATTTGGTTCTTCATGTCTAGATCCCACAGACCCATCGCTGTCAAA 141065 Query 62168 ACTCTAAGGAGATGCGGATTAACTACTTGAAATTCTCCAGACAATACTCTCCGAGTGTAA 62227 || || ||||| | || || || ||||| || || || | ||| | |||| ||||| Sbjct 141066 TCTTGCAGCAGATGGTGGTTCACCACCTGAAACTCGCCGGAAAGTACACGCCGATTGTAA 141125 Query 62228 ATATTACTGGTATACGGTTCCACAGACTCATTATTTCCCAAAATTTGAGCAGTTGATGCA 62287 | || || |||||||| | ||||| || || ||||| ||||| || || || || Sbjct 141126 ACGTTGGACGTGTACGGTTCGAAGGACTCGTTGTTACCCAAGATTTGTGCCGTCGAAGCG 141185 Query 62288 GTCGGCATAGGTGCCACCAATAAACTATTTCTAAGACCGTATGTTCTGATTTTATCTTTT 62347 || ||||| ||||||| || | ||| | | |||| || ||||| || || Sbjct 141186 GTAGGCATCGGTGCCAACAGCAGCGAATTGCGGATGCCGTGCTTTGCAATTTTTTCCTTC 141245 Query 62348 AGAGGTTCCCAATTCCAAAGATCCGACGGTACAACNNNNNNNNNNNNNNNTTGTAGAATA 62407 | ||||||||||||||||||||||| | || || || Sbjct 141246 AACTCGGCCCAATTCCAAAGATCCGACGGTTCCTTCTTCCACATTTCGTACTGCAGGATG 141305 Query 62408 CCGTTACTGGC-GTACGATCCTACATATGTATCGTATGGTCCTTCCTTCTCAGCTAGTTC 62466 || || || | | || ||| | || || ||||| ||||| || | || | || Sbjct 141306 CCTTTGCTTACCGGACTC-CCTTCGTACGTTTCGTACGGTCCGTCGCGGGCGGCCAACTC 141364 Query 62467 ACAACTCGCCTCTAATGCACCGTAATAAATGGTTTCGAAGATCTTCTTATTTAGATCTTG 62526 ||| ||||| || ||||| ||||| || || |||||||| || | | || || | ||| Sbjct 141365 ACAGCTCGCTTCCAATGCTCCGTAGTAGATTGTTTCGAAAATTTGTTGGTTCAGCTTTTG 141424 Query 62527 CGCTTCCAGGCTATCAAATGGATAATTTAAGAGAATAAACGCGTCTGCTAATCCTTGAAC 62586 || ||| ||| || | ||||| | | ||| ||||| || || | || ||||| Sbjct 141425 GGCCTCCTCGCTTTCGTACGGATAGCGCATCAAAATGAACGCATCGGCCATGCCCTGAAC 141484 Query 62587 ACCAATACCGATAGGTCTATGTCTCTTATTAGAGATTTCAGCTTCTGGAATAGGATAATA 62646 ||| |||||||| || || || | | | || ||| | || || || | ||||| || Sbjct 141485 ACCGATACCGATCGGCCTGTGCCGCATGTTGGAGCGCTTCGCCTCCGGTACTGGATAGTA 141544 Query 62647 ATTAATATCTATAATTTTATTGAGATTTCT-GACAATTACTTTGACCACATCCTTCAGTT 62705 || ||||| |||||||| || ||||| | | ||| ||| | | ||||||||||| | Sbjct 141545 GTTTATATCGATAATTTTGTTCAGATTGCGCGTCAAAATCTTCG-CGACATCCTTCAGCT 141603 Query 62706 TGAGAAAATCAAA----TCGCCCATCTATTACAAACATGTTCAATGCAACAGATGCCAGA 62761 || ||| || | | | || | | ||||||||||||| || | || |||| | Sbjct 141604 TGGCAAAGTCGTACGTTTTGTCCGGTT-TCACAAACATGTTCAGCGCGATCGAGGCCAAA 141662 Query 62762 TTACAAACGGCTACCTCATTAGCATC--CGCATATTGTATTATCTCAGTGCAAAGATTAC 62819 || || || |||| |||| | || || || | | |||||| || || ||||| Sbjct 141663 TTGCACACCGCTATTTCATC--CTTCGACGAGTACTCCACTATCTCGGTACACAGATTGG 141720 Query 62820 TACACTTGATGGTTCCTAAATTTTGTTGATTACTCTTTTTGTTACACGCATCCTTATAAA 62879 |||||| ||||| || | || || ||||| ||||| ||| ||||||||||| || | Sbjct 141721 AACACTTTATGGTGCCGATGTTCTGCTGATTGCTCTTGCGGTTGCACGCATCCTTGTACA 141780 Query 62880 GAATGAATGGAGTACCAGTTTCAATCTGAGATTCTATAATCGCTTTCCAGACGACTCGAG 62939 | ||| | ||| || ||||| | ||| ||||| || || || ||| | | | | | Sbjct 141781 GCATGTACGGAACGCCCGTTTCCACCTGCGATTCGATGATGGCAAACCATAGGTCCTGTG 141840 Query 62940 CCTTTATTATAGATTTGTATCTCTTTTCTCTT--TCGTAT--AGTGTATACAATCGTTCG 62995 |||| | | | || || ||| | ||||| |||||| | || ||| Sbjct 141841 CCTTCACCT--GGCGTATAAATCGACCCTCCTGCTCGTACCCAGTGTACAGCTTC--TCG 141896 Query 62996 AACTCGTCTCCCCAAACATTGTCCAGTCCAGGACATTCATCCGGACACATCAACGACCAC 63055 ||||| || |||||| | ||| ||| || || || | || ||||||| |||| Sbjct 141897 AACTCTTCGCCCCAAGTGTCAGCCAATCCGGGGCAGTCGTGTGGGCACATCAGGCTCCAC 141956 Query 63056 TCTCCGTCATCCTTCACTCGTTTCATAAAGAGATCAGGAATCCAAAGAGCTATAAATAGA 63115 | ||| ||| ||| || | ||| || ||||| || ||||| || || || | Sbjct 141957 ATTTCGTTCGCCTCCACACGCTGCATGAACAGATCCGGGATCCACAGGGCGTAGAACATG 142016 Query 63116 TCTCTGGTTCTATGTTCCTCGTTTCCTGTATTCTTTTTAAGATCGAGGAACGCCATAATA 63175 || | || | ||||| || || || || || || ||||| || ||| | | ||| Sbjct 142017 TCGCGGGCACGCACCTCCTCCTTGCCGGTGTTTTTCTTCAGATCCAGAAACTCGAATATA 142076 Query 63176 TCAGAATGCCACGGTTCCAAGTATATGGCCATAACTCCAGGCCGTTTGTTTCCTCCCTGA 63235 || ||||| ||||| | ||| ||||| | | || ||||| ||||| || |||||| Sbjct 142077 TCCCCGTGCCATGGTTCGAGGTAGATGGCAAAGGCGCCGGGCCGCTTGTTGCCACCCTGA 142136 Query 63236 TCTATGTATCTAGCGGTGTTATTATAAACTCTCAACATTGGAATAATACCATTGGATGTA 63295 || | ||| | || ||||| || ||||| | || ||| || | | || || || | Sbjct 142137 TCCACGTACCGGGCCGTGTTGTTGTAAACGCGCAGCATCGGCACCAACCCGTTCGAAATC 142196 Query 63296 CCATTGGTCCCTGAGATATAGCTTCCACTGGCACGAAT--ATTACTAATTGATAGACCTA 63353 ||||| || || ||||| || |||| |||| ||||| | | | || | | || | Sbjct 142197 CCATTCGTGCCGGAGATGTACGTTCCTTTGGCGCGAATGCAGTGCACGTTCA--GCCCGA 142254 Query 63354 TTCCCCCTGCCATTTTAGAGATTAATGCGCATCGTTTTAACGTATCATAGATGCCCTCTA 63413 | || || ||| ||| || || | ||| || | |||| |||||| || || ||||| | Sbjct 142255 TACCGCCGGCCGATTTGGAAATCAGTGCACACTGCTTTAGCGTATCGTAAATACCCTCAA 142314 Query 63414 TACTATCATCCATCATGTTAAGTAGAAAACAGCTAGACATTTGGTGACGACTAGTTCCCG 63473 |||| || ||| |||| |||| ||||| || || | || |||| || | | Sbjct 142315 TACTGTCGTCCGACATGGTAAGCAGAAAGCAAGACGAAAGCTGCGGACGCTGCGTAGCGG 142374 Query 63474 CATTAAATAAGGTAGGAGAAGCGTGAGTAAACCATTTTTCAGAAAGTAGATTGTACGTCT 63533 | ||| | ||| || || || || ||||| | || ||||| ||||||||||||| Sbjct 142375 CCGCAAACATGGTCGGTGAGGCATGGGTAAAGTAGCGCTCGGAAAGCAGATTGTACGTCT 142434 Query 63534 CAATAGCTGAGTCTATATC-CCATTGATGAATTCCTACTGCGACACGCATTAACATGTGC 63592 | || || | || || || || | ||||| || | || || ||||| | |||||| Sbjct 142435 CGATGGCAGCATCAATGTCTTCACCG-TGAATACCGATGGCAACGCGCATCAGCATGTGT 142493 Query 63593 TGAGGTCTTTCAACGATCTTGTTGTTTATTTTCAACAAGTAGGATTTTTCCAAAGTTTTA 63652 || |||| || || ||||| || || |||| ||| ||||| |||| ||||| Sbjct 142494 TGCGGTCGCTCCACAATCTTACCCTTGATCTTCAGCAAATAGGAACGCTCCAGTGTTTTG 142553 Query 63653 AAACCAAAATAGTTGTATGAAAAGTCTCGTTCGTAAATAATAACCGAGTTGAG 63705 || || ||||||||||| || || || |||||||| || ||||||| || Sbjct 142554 AAGCCGAAATAGTTGTACCCGAAATCACGGTCGTAAATGATGGCCGAGTTCAG 142606 >seq24 Length=2206587 Score = 100 bits (110), Expect = 4e-16 Identities = 178/258 (69%), Gaps = 5/258 (2%) Strand=Plus/Plus Query 32649 TTAAACATCAAACATGCGAAATCGCAGTGTAGACCCTCGTCTCTACTAATTAATTCGTTG 32708 || ||||||| || |||||||| || || | |||||||| || ||| | ||||| Sbjct 1947559 TTGAACATCAGGCAGGCGAAATCACAATGCAATCCCTCGTCCCTCGAAATCAGCTCGTTC 1947618 Query 32709 GAAAACGTGAGTCCGGGCATTAGGCCACGCTTTTTAAGCCAAAATATGGACGCAAATGAT 32768 || || || || || ||||| ||||||||||| || ||||| || ||||||||||| Sbjct 1947619 GAGAAGGTAAGACCCGGCATAAGGCCACGCTTCTTGAGCCAGAAGATGGACGCAAAGCTG 1947678 Query 32769 CCAGAAAAGAAAATTCCTTCTACTGCCGCAAAGGCAATAAGTCTCTCTCCA----TAACC 32824 || ||||| || || || || || ||||| || | | | ||| ||| || || Sbjct 1947679 CCGCTGAAGAAGATACCCTCGACGGCAGCAAATGCGACCACACGCTCGCCAAAGTTAGCC 1947738 Query 32825 GGCGCTGTCATGTATCCACTTTTGAGCCCAATCGGCCTTCTTTTTTACACAAGGCATTGT 32884 | || | ||||| || | ||||| || |||||||| || || || || | || Sbjct 1947739 TTCTTGCTCGAG-ATCCAGTTAAGCGCCCAGTCTGCCTTCTTCTTCACGCACGGTAGCGT 1947797 Query 32885 CTCTATAGCATTAAAGAG 32902 || || |||||||| || Sbjct 1947798 TTCGATGGCATTAAACAG 1947815 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 633446892331600