Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Anopheles_20stephensi_20[genbank_20GCA_5F000300775.2_202013-07-19] 23,371 sequences; 221,324,304 total letters Query= NC_008293.1 Length=135454 Score E Sequences producing significant alignments: (Bits) Value seq68 125 6e-24 seq1 107 2e-18 >seq68 Length=961948 Score = 125 bits (138), Expect = 6e-24 Identities = 226/322 (70%), Gaps = 10/322 (3%) Strand=Plus/Plus Query 50983 ACGTTAAACTTACGCTTACAGCCCGCGTAGTTCATATACCTGATTCTGCCAAAAATTTTG 51042 |||||||| || ||||| || ||| | |||||||| |||| || |||||||||| Sbjct 663299 ACGTTAAATTTGCGCTTGCATCCCTCATAGTTCATGTACCGAATCTTGCCAAAAATCGCA 663358 Query 51043 CGTTCTTTG-AACGGCCTG-TCGTGCACACCGCAAATTGACCACATACAACCCACATAAT 51100 || || || ||| |||| ||||| | || || ||||||||||| || || || Sbjct 663359 CGCTCCTTCCAAC--CCTGATCGTGTATGCCTGCGATCGACCACATACAGCCGACGTACC 663416 Query 51101 TGTTAGGATCGCGACCATCCACGCTGTAATGATCGTTTAGAAATATGGCATAACCCAATG 51160 ||| |||||||| ||||||| ||||| | ||||| ||| | ||||| | | | Sbjct 663417 CGTTCGGATCGCGCCCATCCAGACTGTACCGGTCGTTCAGATAGATGGCCGTTTCGAGCG 663476 Query 51161 CCATGTCTGCACTAGGCGTCCATTCCATAATTTTCTTGGCCCAGTACATGCGCATGTAAC 51220 | || | | |||||| |||| || ||||| ||||| ||||| |||| | | Sbjct 663477 CTTCCTCGGGCGTTTTCGTCCACTCCAGTATCTTCTTCGCCCAATACATCCGCAGAAAGC 663536 Query 51221 CGTGCATCTTGCCCTC--GCAACGAAGCTGCGCTTGAGCCGAGTTCCACAATTCGTCGTG 51278 | |||||||||||||| || | | |||| || |||| |||||||| |||||||| Sbjct 663537 CATGCATCTTGCCCTCCTTCACC--ATCTGCAGCTGGGCCGCGTTCCACAGATCGTCGTG 663594 Query 51279 AG-TTTGGCAACTTGCCAGCTC 51299 | |||||| ||| ||||||| Sbjct 663595 CGTTTTGGCCGCTT-CCAGCTC 663615 >seq1 Length=5975090 Score = 107 bits (118), Expect = 2e-18 Identities = 153/213 (72%), Gaps = 2/213 (1%) Strand=Plus/Plus Query 24999 ATGCAAATATTTGTAAAGACTTTGACCGGTAAATCCATCACAGTCGAAGTGGAGTCGTCT 25058 ||||| || || || |||||| ||||||| || ||||||| |||| || ||| | || Sbjct 5042934 ATGCAGATCTTCGTCAAGACTCTGACCGGAAAGACCATCACCCTCGAGGTTGAGCCATCC 5042993 Query 25059 GACACTATCGAGTCACTGAAG-CAAAAAATCACTGACAAAGAAGGGATTCCACCTGACCA 25117 ||||| |||||| ||||| | || | ||| ||||| || || || || || || || Sbjct 5042994 GACACCATCGAGAATGTGAAGGCCAAGATTCAG-GACAAGGAGGGAATCCCGCCAGATCA 5043052 Query 25118 ACAGCGGATTATTTTTGCCGGCAAACAATTAGAAGATGATCGCACTGTGGGCGATTACAA 25177 ||||| | || ||||||||||| || | ||||||| ||||| || || || || Sbjct 5043053 GCAGCGTCTGATCTTTGCCGGCAAGCAGCTGGAAGATGGCCGCACCCTGTCGGACTATAA 5043112 Query 25178 TATTCAAAAAGAATCCACGCTACATTTAGTGCT 25210 || || || |||||||| || ||| | || || Sbjct 5043113 CATCCAGAAGGAATCCACCCTCCATCTGGTCCT 5043145 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 433204573425365