Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Anopheles_20stephensi_20[genbank_20GCA_5F000300775.2_202013-07-19]
23,371 sequences; 221,324,304 total letters
Query= NC_008293.1
Length=135454
Score E
Sequences producing significant alignments: (Bits) Value
seq68 125 6e-24
seq1 107 2e-18
>seq68
Length=961948
Score = 125 bits (138), Expect = 6e-24
Identities = 226/322 (70%), Gaps = 10/322 (3%)
Strand=Plus/Plus
Query 50983 ACGTTAAACTTACGCTTACAGCCCGCGTAGTTCATATACCTGATTCTGCCAAAAATTTTG 51042
|||||||| || ||||| || ||| | |||||||| |||| || ||||||||||
Sbjct 663299 ACGTTAAATTTGCGCTTGCATCCCTCATAGTTCATGTACCGAATCTTGCCAAAAATCGCA 663358
Query 51043 CGTTCTTTG-AACGGCCTG-TCGTGCACACCGCAAATTGACCACATACAACCCACATAAT 51100
|| || || ||| |||| ||||| | || || ||||||||||| || || ||
Sbjct 663359 CGCTCCTTCCAAC--CCTGATCGTGTATGCCTGCGATCGACCACATACAGCCGACGTACC 663416
Query 51101 TGTTAGGATCGCGACCATCCACGCTGTAATGATCGTTTAGAAATATGGCATAACCCAATG 51160
||| |||||||| ||||||| ||||| | ||||| ||| | ||||| | | |
Sbjct 663417 CGTTCGGATCGCGCCCATCCAGACTGTACCGGTCGTTCAGATAGATGGCCGTTTCGAGCG 663476
Query 51161 CCATGTCTGCACTAGGCGTCCATTCCATAATTTTCTTGGCCCAGTACATGCGCATGTAAC 51220
| || | | |||||| |||| || ||||| ||||| ||||| |||| | |
Sbjct 663477 CTTCCTCGGGCGTTTTCGTCCACTCCAGTATCTTCTTCGCCCAATACATCCGCAGAAAGC 663536
Query 51221 CGTGCATCTTGCCCTC--GCAACGAAGCTGCGCTTGAGCCGAGTTCCACAATTCGTCGTG 51278
| |||||||||||||| || | | |||| || |||| |||||||| ||||||||
Sbjct 663537 CATGCATCTTGCCCTCCTTCACC--ATCTGCAGCTGGGCCGCGTTCCACAGATCGTCGTG 663594
Query 51279 AG-TTTGGCAACTTGCCAGCTC 51299
| |||||| ||| |||||||
Sbjct 663595 CGTTTTGGCCGCTT-CCAGCTC 663615
>seq1
Length=5975090
Score = 107 bits (118), Expect = 2e-18
Identities = 153/213 (72%), Gaps = 2/213 (1%)
Strand=Plus/Plus
Query 24999 ATGCAAATATTTGTAAAGACTTTGACCGGTAAATCCATCACAGTCGAAGTGGAGTCGTCT 25058
||||| || || || |||||| ||||||| || ||||||| |||| || ||| | ||
Sbjct 5042934 ATGCAGATCTTCGTCAAGACTCTGACCGGAAAGACCATCACCCTCGAGGTTGAGCCATCC 5042993
Query 25059 GACACTATCGAGTCACTGAAG-CAAAAAATCACTGACAAAGAAGGGATTCCACCTGACCA 25117
||||| |||||| ||||| | || | ||| ||||| || || || || || || ||
Sbjct 5042994 GACACCATCGAGAATGTGAAGGCCAAGATTCAG-GACAAGGAGGGAATCCCGCCAGATCA 5043052
Query 25118 ACAGCGGATTATTTTTGCCGGCAAACAATTAGAAGATGATCGCACTGTGGGCGATTACAA 25177
||||| | || ||||||||||| || | ||||||| ||||| || || || ||
Sbjct 5043053 GCAGCGTCTGATCTTTGCCGGCAAGCAGCTGGAAGATGGCCGCACCCTGTCGGACTATAA 5043112
Query 25178 TATTCAAAAAGAATCCACGCTACATTTAGTGCT 25210
|| || || |||||||| || ||| | || ||
Sbjct 5043113 CATCCAGAAGGAATCCACCCTCCATCTGGTCCT 5043145
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 433204573425365
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |