Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Anopheles_20stephensi_20[genbank_20GCA_5F000300775.2_202013-07-19] 23,371 sequences; 221,324,304 total letters Query= NC_008518.1 Length=174059 Score E Sequences producing significant alignments: (Bits) Value seq24 179 4e-40 seq28 113 5e-20 >seq24 Length=2206587 Score = 179 bits (198), Expect = 4e-40 Identities = 309/449 (69%), Gaps = 0/449 (0%) Strand=Plus/Plus Query 92896 CTTTTCACCGATCAACTCGTACAATAATCTATCAGCTACAAATTCTATGTACTGAGACAT 92955 ||| |||| | |||||| || || | ||| || ||||| || |||||||| ||||| Sbjct 1947375 CTTGTCACAGCCCAACTCCAGCAGCAAACGATCCGCCACAAACTCAATGTACTGCGACAT 1947434 Query 92956 CAAATCACAATTCATTCCTAGAAGACGTACAGGTAGAGCGTCGGTCAAGAAATCTTTCTC 93015 || |||||||||||| || || | | || || || || | ||||| || |||| ||| Sbjct 1947435 CAGATCACAATTCATGCCGAGCATATCGACCGGCAGGGCTTTCGTCAAAAATTCTTGCTC 1947494 Query 93016 GATTACAACGGCTTCTTTCAAGATTTCTATTACTCTACTATTTGGTGGTTTTTGTACGAC 93075 ||| || || || || | ||| || | || | || | || || || || | Sbjct 1947495 GATCACTACCGCATCGCGGATGATCTCCGTCACGCGCTCCTTCGAAGGCTTCTGCACCAG 1947554 Query 93076 ATAATTGTACATTAAGCACGCAAAGTCGGTATGTAAACCTTCGTCTCGTGATATCAACTC 93135 ||| ||| |||| | ||| || || || ||| || || ||||| | || |||| ||| Sbjct 1947555 ATACTTGAACATCAGGCAGGCGAAATCACAATGCAATCCCTCGTCCCTCGAAATCAGCTC 1947614 Query 93136 ATTGCTGAATGTTAAACCTGGTAACAGTCCTCGTTTCTTGAGCCAAAATATTGAAGCAAA 93195 || ||| || | ||| || | || || || ||||||||||| || || || ||||| Sbjct 1947615 GTTCGAGAAGGTAAGACCCGGCATAAGGCCACGCTTCTTGAGCCAGAAGATGGACGCAAA 1947674 Query 93196 ACTACCAGaaaaaaaTATACCTTCCACGGCTGCAAATGCCACAATACGTTCGGCAAAATT 93255 || || || || ||||| || ||||| |||||||| || | ||| ||| |||| || Sbjct 1947675 GCTGCCGCTGAAGAAGATACCCTCGACGGCAGCAAATGCGACCACACGCTCGCCAAAGTT 1947734 Query 93256 TGCGGAATTACTGCTGATCCATTTTAAAGCCCAATCGGCTTTTTTCTTAATACAAGGTAG 93315 || || || |||||| || | ||||| || || || ||||| | || ||||| Sbjct 1947735 AGCCTTCTTGCTCGAGATCCAGTTAAGCGCCCAGTCTGCCTTCTTCTTCACGCACGGTAG 1947794 Query 93316 TGTTTCGATAGCGTTAAATAGGTAATCTC 93344 |||||||| || ||||| ||| | |||| Sbjct 1947795 CGTTTCGATGGCATTAAACAGGAACTCTC 1947823 Score = 131 bits (144), Expect = 2e-25 Identities = 196/275 (71%), Gaps = 4/275 (1%) Strand=Plus/Plus Query 93352 CGAATCTCGTATGTATGTATCGATTAACAGAGAATACATTTCAGAATGGACATTCTCCAT 93411 |||||| || ||||| || ||||| | ||| || ||||| ||| ||||| |||||||| Sbjct 1947916 CGAATCACGGATGTACGTGTCGATCAGCAGCGAGTACATCTCACTGTGGACGTTCTCCAT 1947975 Query 93412 TGCAATTTGGAATCCGTAGAAACATCTAGCTTCCGTGATCTGCACTTCTTGAGAAAATCT 93471 ||||| ||||| |||||||| || | || ||||| | |||||| || || || | Sbjct 1947976 CGCAATCTGGAAGCCGTAGAAGCAGCGCGCCTCCGTTACCTGCACCTCCTGGCTGAACCG 1948035 Query 93472 CTCTACGAGATTTTCATTGACTATACCATCGGATGCTGCaaaaaaaGCCAATATATGCTT 93531 || || ||||| || || || ||||| ||||| || ||||| || |||| | ||| Sbjct 1948036 TTCGACCAGATTCTCGTTCACGATACCGTCGGACGCGGCAAAGAAGGCCAGCACGTGCGA 1948095 Query 93532 TATAAAATGT--TTCTCATCATCTTTAAGCTTATCCCAATCGGATAGATCTTTTGAAAGA 93589 |||||||| ||| | || |||| || ||||| || | || || || || Sbjct 1948096 GATAAAATGACGTTCGC-TCGGTTTTA-GCGAGTCCCAGTCCTTCATGTCCTTCGATAGG 1948153 Query 93590 TCGACTTCTTCGACAGTCCAAAACGATGCTTCTGC 93624 || || ||||| || ||||| ||||||||||| || Sbjct 1948154 TCTACCTCTTCCACGGTCCAGAACGATGCTTCAGC 1948188 >seq28 Length=2078127 Score = 113 bits (124), Expect = 5e-20 Identities = 77/86 (90%), Gaps = 2/86 (2%) Strand=Plus/Plus Query 126266 GTCAGGTTGGCCGAGTGGTCTAAGGCGCCAGATTTAAGATCTGGTTCCC--TCGGGAGCG 126323 |||||| |||||||| |||||||||||||||||||||| |||||||||| ||||||| Sbjct 439919 GTCAGGATGGCCGAGCGGTCTAAGGCGCCAGATTTAAGCTCTGGTTCCCGTAAGGGAGCG 439978 Query 126324 TGGGTTCGAACCCCACACCTGACAAA 126349 |||||||||||||||| |||||||| Sbjct 439979 TGGGTTCGAACCCCACTTCTGACAAA 440004 Score = 111 bits (122), Expect = 2e-19 Identities = 76/85 (89%), Gaps = 2/85 (2%) Strand=Plus/Minus Query 126265 AGTCAGGTTGGCCGAGTGGTCTAAGGCGCCAGATTTAAGATCTGGTTCCC--TCGGGAGC 126322 ||||||| |||||||| |||||||||||||||||||||| |||||||||| |||||| Sbjct 423521 AGTCAGGATGGCCGAGCGGTCTAAGGCGCCAGATTTAAGCTCTGGTTCCCGTAAGGGAGC 423462 Query 126323 GTGGGTTCGAACCCCACACCTGACA 126347 ||||||||||||||||| |||||| Sbjct 423461 GTGGGTTCGAACCCCACTTCTGACA 423437 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 556698120078040