Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Anopheles_20stephensi_20[genbank_20GCA_5F000300775.2_202013-07-19] 23,371 sequences; 221,324,304 total letters Query= NC_008586.1 Length=131204 Score E Sequences producing significant alignments: (Bits) Value seq59 260 1e-64 seq57 118 9e-22 seq1 118 9e-22 seq6 109 5e-19 seq20 89.7 4e-13 >seq59 Length=1145648 Score = 260 bits (288), Expect = 1e-64 Identities = 1025/1599 (64%), Gaps = 20/1599 (1%) Strand=Plus/Plus Query 128779 TTGTCCACGGTAAATTTAATAGCGTCCGCTGCCGGCTTGGTGCGCAAATAGTACATGCCT 128838 |||||||| ||||| | || || | | ||||| || || |||| |||||||||||| Sbjct 140736 TTGTCCACCGTAAACTGGATCGCATTTACGGCCGGTTTTGTTCGCAGATAGTACATGCCC 140795 Query 128839 GTTTTCAAACCGCTTTTCCAAGTGTGCATGTGAATCGTGGTCAACAATGCGTAGGTGGGT 128898 ||||||| || ||||||| || | ||| |||| |||| | | ||| | ||| Sbjct 140796 GTTTTCAGTCCCATTTTCCAGCCGTAAAAGTGGATCGATGTCAGCTTGCCATAGTTCGGT 140855 Query 128899 TGACTCaaaaaaaTATTAAATGATTGACTTTGATCAATAAAGGGGCCGCGATCGGCAGCC 128958 | || || || || ||||| ||||| ||||| | || || || |||||| Sbjct 140856 TCGGCCACGTGTATGTTGAACGATTGCGACTGATCGATAAACGCACCCCGGTCAGCAGCC 140915 Query 128959 ATACCAATCAAATTTTTCACTTTCATTTCCCACACCGTTTTGTAAAGCTCTCTCACGTGT 129018 || ||| | |||| || || ||||||||||||||||| || || | | | Sbjct 140916 ATCTTAATGCACGTTTTAACCGAAATCTCCCACACCGTTTTGTACAGATCGCGTATTTCC 140975 Query 129019 TTTGGTATTTCTTCAATGTTCTGCA-CGCTGCCGTTGTTTGCAATAATTTTGTTTCGCAT 129077 || ||||| ||| ||| | || | || | |||||||| | | ||||| ||| ||| Sbjct 140976 TTCGGTATCGATTCGATGCTTTGAATCGAT-CCGTTGTTGGACAGAATTTGGTTCTTCAT 141034 Query 129078 CTGTTCGTTGTACAAATTCAGTTTGATCAAATCGTCGGTCAAGTATTTGTTTATTACTTG 129137 | | | ||| | || ||||||| | || | | ||| | || || Sbjct 141035 GTCTAGATCCCACAGACCCATCGCTGTCAAATCTTGCAGCAGATGGTGGTTCACCACCTG 141094 Query 129138 AAAGTCACCCGCCAAAACGCGCCGAACGTAAATGTTGTTGGTGAACGGCTCAAACGATTC 129197 ||| || || | | || |||||| ||||| |||| ||| |||| || || || || Sbjct 141095 AAACTCGCCGGAAAGTACACGCCGATTGTAAACGTTGGACGTGTACGGTTCGAAGGACTC 141154 Query 129198 ATTGTTGCCTAATATTTGAGCCGTTGTCGCGGTGGGCATGTAAGCCACGCAAAGCGAGTT 129257 ||||| || || ||||| ||||| | ||||| ||||| |||| ||||| || Sbjct 141155 GTTGTTACCCAAGATTTGTGCCGTCGAAGCGGTAGGCATCGGTGCCAACAGCAGCGAATT 141214 Query 129258 TCGCAAACCGTGCTGTTTAATGTCtttttttAATTGTGTCCAGTCCCACATCGATGTG-- 129315 || | ||||||| | ||| | || || || | | ||| | ||| | ||| | Sbjct 141215 GCGGATGCCGTGCTTTGCAATTTTTTCCTTCAACTCGGCCCAATTCCAAA--GATCCGAC 141272 Query 129316 GGTGTGTGATTCCACAAGTCGTATTGCAATATACCCAAACTGGCGGGACTGGAAAAGTAG 129375 ||| | ||||||| ||||| |||| || || || | ||||| ||| Sbjct 141273 GGTTCCTTCTTCCACATTTCGTACTGCAGGATGCCTTTGCTTACCGGACTCCCTTCGTAC 141332 Query 129376 GAATCGTGCACGCCGTAAGCTTTTGCCAATTCGCAACTCGCTTCCAATGCGCCAAAATAA 129435 | |||| | |||| ||||| || || |||||||||||||| || | || Sbjct 141333 GTTTCGTACGGTCCGTCGCGGGCGGCCAACTCACAGCTCGCTTCCAATGCTCCGTAGTAG 141392 Query 129436 ATTGTTTCGGCAATTTTGGTGTTCAACACTTTGGCCTGGTCGCTTTCGTACGGCATA-CG 129494 ||||||||| ||||| ||||| | || ||||| |||||||||||||| ||| || Sbjct 141393 ATTGTTTCGAAAATTTGTTGGTTCAGCTTTTGGGCCTCCTCGCTTTCGTACGG-ATAGCG 141451 Query 129495 CAACATGGCAAATGTGTCGGCCAAACCTTGAATACCCACACCGATGGGTCGATGTTTTCT 129554 || || || | ||||||| || |||| ||| | |||||| || | || | Sbjct 141452 CATCAAAATGAACGCATCGGCCATGCCCTGAACACCGATACCGATCGGCCTGTGCCGCAT 141511 Query 129555 ATTGGATTTTTGTGCCGACAACAAGGGATAGTAGTTGATGTCTATAATTTTGTTTAAATT 129614 ||||| | ||| | | ||||||||||| || || ||||||||||| | ||| Sbjct 141512 GTTGGAGCGCTTCGCCTCCGGTACTGGATAGTAGTTTATATCGATAATTTTGTTCAGATT 141571 Query 129615 CTTGACCACAATTTTCGTTACGTATTTTAACATTTCAAAATTGTACTCGCCTACATCGAT 129674 || ||| |||| || | || | | | |||| | |||| | | || | Sbjct 141572 GCGCGTCAAAATCTTCGCGACATCCTTCAGCTTGGCAAAGTCGTAC--GTTTTGTCCGGT 141629 Query 129675 GTCGACAAATTGATTGACACAAATCGAGGCCAAATTGCAGACGGCACTTTCGTTTTTGTC 129734 || ||||| || | ||||||||||||||||| || || |||| | || Sbjct 141630 TTC-ACAAACATGTTCAGCGCGATCGAGGCCAAATTGCACACCGCTATTTCATCCTTCGA 141688 Query 129735 ACTGTACTCGACAATTTCGGCGCACAAATTACTATTTTTAATGGTGCCCAAATGCTTTTG 129794 |||||| || || |||| |||| ||| | || |||||||| | | || || Sbjct 141689 CGAGTACTCCACTATCTCGGTACACAGATTGGAACACTTTATGGTGCCGATGTTCTGCTG 141748 Query 129795 ATTACTTTTCATGTTGCAAGCATCTTTGTACATCATGTACGGCGTGCCCGTTTCGACTTG 129854 ||| || || |||||| ||||| ||||||| ||||||||| ||||||||| || || Sbjct 141749 ATTGCTCTTGCGGTTGCACGCATCCTTGTACAGCATGTACGGAACGCCCGTTTCCACCTG 141808 Query 129855 CGTTTCGACAATGGTCCTGAACAAGTCTCGAGCCTTGATCTGTCTTACAAATTTGCCACA 129914 || ||||| |||| | | ||| | ||||| | ||| | || |||| || Sbjct 141809 CGATTCGATGATGGCAAACCATAGGTCCTGTGCCTTCACCTGGCGTATAAATCGACCCTC 141868 Query 129915 TTTCTCGTATGCCACATACAGTTGTTCAAATTCTGAGCCGTGTACGGTGTCGAGCAA--C 129972 | |||||| | ||||| | || || ||| ||| ||||| ||| | Sbjct 141869 CTGCTCGTACCCAGTGTACAGCTTCTCGAACTCTTCGCCCCAA---GTGTCAGCCAATCC 141925 Query 129973 GGCG-ATTCACGCGGACACATCAAACTCCACATTCCATCCGCTTCGACTCGTTTCATAAA 130031 || | | || | || ||||||| ||||||||| | | ||| || || || | ||| || Sbjct 141926 GGGGCAGTCGTGTGGGCACATCAGGCTCCACATTTCGTTCGCCTCCACACGCTGCATGAA 141985 Query 130032 CAAATCGGGTACCCACAGGGCGTACAACAAATCTCGCGCTTTTCTATCCTCGGCACCCAT 130091 || ||| || | |||||||||||| |||| || || || ||||| || | Sbjct 141986 CAGATCCGGGATCCACAGGGCGTAGAACATGTCGCGGGCACGCACCTCCTCCTTGCCGGT 142045 Query 130092 GTTACGTTTCAGTTCAAGGAAATCGTAAATGTCGGCGTGCCACGGTTCAACATAAATTGC 130151 ||| ||||| || || || ||| | || || ||||||| ||||| | || || || Sbjct 142046 GTTTTTCTTCAGATCCAGAAACTCGAATATATCCCCGTGCCATGGTTCGAGGTAGATGGC 142105 Query 130152 CATTGCGCCCTTCCG---TTTGCCCCCTTGGTCAACGTGGCGCACGGCATTGTTGTAGAC 130208 | ||||| ||| ||||| || || || |||| || | | |||||||| || Sbjct 142106 AAAGGCGCCGGGCCGCTTGTTGCCACCCTGATCCACGTACCGGGCCGTGTTGTTGTAAAC 142165 Query 130209 TCGCAACATTGCCTCCAATCCGTTGGCCGTGCCGTTTGTGCTCTCAATGAAACTGCCACG 130268 |||| ||| | | |||| ||||| | | || || |||| ||| | | || Sbjct 142166 GCGCAGCATCGGCACCAACCCGTTCGAAATCCCATTCGTGCCGGAGATGTACGTTCCTTT 142225 Query 130269 AGCCCGAACGTTATGAACGCTTAGACCTATGCCGCCGCCAAATTTTGATATCAACGCGCA 130328 || |||| | || ||| | || || || |||||| | |||| || |||| || || Sbjct 142226 GGCGCGAATGCAGTGCACGTTCAGCCCGATACCGCCGGCCGATTTGGAAATCAGTGCACA 142285 Query 130329 ATCGCGTAGCGTTTCATAAATGCCAACGATACTGTCTTC 130367 | |||||| || ||||| || | |||||||| || Sbjct 142286 CTGCTTTAGCGTATCGTAAATACCCTCAATACTGTCGTC 142324 >seq57 Length=1190389 Score = 118 bits (130), Expect = 9e-22 Identities = 163/228 (71%), Gaps = 0/228 (0%) Strand=Plus/Minus Query 22219 ATGCAAATTTTTGTTAAAACTTTAACCGGTAAAACGGTCACTCTTGAAGTGGAAACCACC 22278 ||||| ||||| || ||||| | ||||| || || |||| ||||| || || | | Sbjct 631524 ATGCAGATTTTCGTGAAAACACTCACCGGCAAGACCATCACACTTGAGGTCGAGCCTTCG 631465 Query 22279 GATACCGTGGACGATATCAAACAAAAAATTCAAGACAAGGAGGGTATTCCACCCGATCAA 22338 || || | || || | || || || || || ||||| || ||||| || ||||| Sbjct 631464 GACACGATCGAGAATGTGAAGGCCAAGATCCAGGATAAGGAAGGAATTCCTCCAGATCAG 631405 Query 22339 CAACGTCTTATATTTGCCGGCAAACAGTTAGAGGATCACCGCACCGTCTCCGATTACAAC 22398 || ||||| || || |||||||| ||| | |||||| |||||| | || || |||||| Sbjct 631404 CAGCGTCTCATCTTCGCCGGCAAGCAGCTGGAGGATGGTCGCACCCTGTCGGACTACAAC 631345 Query 22399 ATTCAAAAAGAATCCACCATACATTTAGTTTTGCGATTGCGCGGAGGT 22446 ||||| || ||||| ||| | ||| | || ||||| | ||||| ||| Sbjct 631344 ATTCAGAAGGAATCTACCCTTCATCTGGTGCTGCGACTCCGCGGTGGT 631297 >seq1 Length=5975090 Score = 118 bits (130), Expect = 9e-22 Identities = 164/230 (71%), Gaps = 0/230 (0%) Strand=Plus/Plus Query 22216 AAGATGCAAATTTTTGTTAAAACTTTAACCGGTAAAACGGTCACTCTTGAAGTGGAAACC 22275 || |||||||| || || || ||| | ||||| || || |||| ||||| || || | Sbjct 5042703 AACATGCAAATCTTCGTCAAGACTCTGACCGGAAAGACTATCACCCTTGAGGTTGAGCCA 5042762 Query 22276 ACCGATACCGTGGACGATATCAAACAAAAAATTCAAGACAAGGAGGGTATTCCACCCGAT 22335 |||| ||| | || || | || || ||||| ||||||||||| || || || ||| Sbjct 5042763 TCCGACACCATCGAGAATGTGAAGGCCAAGATTCAGGACAAGGAGGGAATCCCGCCAGAT 5042822 Query 22336 CAACAACGTCTTATATTTGCCGGCAAACAGTTAGAGGATCACCGCACCGTCTCCGATTAC 22395 || || ||||| || ||||| || || ||| | || ||| ||||||| | || || || Sbjct 5042823 CAGCAGCGTCTGATCTTTGCTGGTAAGCAGCTGGAAGATGGCCGCACCCTGTCGGACTAT 5042882 Query 22396 AACATTCAAAAAGAATCCACCATACATTTAGTTTTGCGATTGCGCGGAGG 22445 ||||| || || ||||||||| | ||| | || | || |||| || || Sbjct 5042883 AACATCCAGAAGGAATCCACCCTCCATCTGGTCCTTCGTCTGCGTGGTGG 5042932 Score = 116 bits (128), Expect = 3e-21 Identities = 162/227 (71%), Gaps = 0/227 (0%) Strand=Plus/Plus Query 22219 ATGCAAATTTTTGTTAAAACTTTAACCGGTAAAACGGTCACTCTTGAAGTGGAAACCACC 22278 ||||| || || || || ||| | ||||| || || |||| || || || || | || Sbjct 5042934 ATGCAGATCTTCGTCAAGACTCTGACCGGAAAGACCATCACCCTCGAGGTTGAGCCATCC 5042993 Query 22279 GATACCGTGGACGATATCAAACAAAAAATTCAAGACAAGGAGGGTATTCCACCCGATCAA 22338 || ||| | || || | || || ||||| ||||||||||| || || || ||||| Sbjct 5042994 GACACCATCGAGAATGTGAAGGCCAAGATTCAGGACAAGGAGGGAATCCCGCCAGATCAG 5043053 Query 22339 CAACGTCTTATATTTGCCGGCAAACAGTTAGAGGATCACCGCACCGTCTCCGATTACAAC 22398 || ||||| || ||||||||||| ||| | || ||| ||||||| | || || || ||| Sbjct 5043054 CAGCGTCTGATCTTTGCCGGCAAGCAGCTGGAAGATGGCCGCACCCTGTCGGACTATAAC 5043113 Query 22399 ATTCAAAAAGAATCCACCATACATTTAGTTTTGCGATTGCGCGGAGG 22445 || || || ||||||||| | ||| | || | || |||| || || Sbjct 5043114 ATCCAGAAGGAATCCACCCTCCATCTGGTCCTTCGTCTGCGTGGTGG 5043160 Score = 114 bits (126), Expect = 1e-20 Identities = 164/231 (71%), Gaps = 0/231 (0%) Strand=Plus/Plus Query 22219 ATGCAAATTTTTGTTAAAACTTTAACCGGTAAAACGGTCACTCTTGAAGTGGAAACCACC 22278 ||||| || || || || ||| | ||||| || || |||| || || || || | || Sbjct 5043162 ATGCAGATCTTCGTCAAGACTCTGACCGGAAAGACCATCACCCTCGAGGTTGAGCCATCC 5043221 Query 22279 GATACCGTGGACGATATCAAACAAAAAATTCAAGACAAGGAGGGTATTCCACCCGATCAA 22338 || ||| | || || | || || ||||| ||||||||||| || || || ||||| Sbjct 5043222 GACACCATCGAGAATGTGAAGGCCAAGATTCAGGACAAGGAGGGAATCCCGCCAGATCAG 5043281 Query 22339 CAACGTCTTATATTTGCCGGCAAACAGTTAGAGGATCACCGCACCGTCTCCGATTACAAC 22398 || ||||| || ||||| ||||| ||| | || ||| ||||||| | || || || ||| Sbjct 5043282 CAGCGTCTGATCTTTGCTGGCAAGCAGCTGGAAGATGGCCGCACCCTGTCGGACTATAAC 5043341 Query 22399 ATTCAAAAAGAATCCACCATACATTTAGTTTTGCGATTGCGCGGAGGTTTT 22449 || || || ||||||||| | ||| | || | || |||| || ||| || Sbjct 5043342 ATCCAGAAGGAATCCACCCTCCATCTGGTCCTTCGTCTGCGTGGTGGTATT 5043392 Score = 100 bits (110), Expect = 2e-16 Identities = 150/213 (70%), Gaps = 0/213 (0%) Strand=Plus/Plus Query 22215 AAAGATGCAAATTTTTGTTAAAACTTTAACCGGTAAAACGGTCACTCTTGAAGTGGAAAC 22274 || |||||| || || || ||||| |||||||| |||||| |||||||||| || | | Sbjct 5040303 AATGATGCAGATCTTCGTGAAAACATTAACCGGAAAAACGATCACTCTTGATGTTGTCGC 5040362 Query 22275 CACCGATACCGTGGACGATATCAAACAAAAAATTCAAGACAAGGAGGGTATTCCACCCGA 22334 | || || || || || ||| | ||||| | ||| || |||||| ||| || Sbjct 5040363 GTCAGAGACGGTTTTGGACATTAAAAACAAAATCCTAGAACGCGAAGGTATTGAACCGGA 5040422 Query 22335 TCAACAACGTCTTATATTTGCCGGCAAACAGTTAGAGGATCACCGCACCGTCTCCGATTA 22394 || || ||| | |||||||| ||||||||||| || ||| || | | || ||||| Sbjct 5040423 CCAGCAGCGTATCATATTTGCTGGCAAACAGTTGGAAGATGGTCGGATTATATCGGATTA 5040482 Query 22395 CAACATTCAAAAAGAATCCACCATACATTTAGT 22427 ||| ||||| | | || || || ||||| || Sbjct 5040483 CAATATTCAGCACGGTTCGACGATGCATTTGGT 5040515 >seq6 Length=4219845 Score = 109 bits (120), Expect = 5e-19 Identities = 162/230 (70%), Gaps = 0/230 (0%) Strand=Plus/Minus Query 22216 AAGATGCAAATTTTTGTTAAAACTTTAACCGGTAAAACGGTCACTCTTGAAGTGGAAACC 22275 |||||||| || || || ||||| | || ||||| || | |||||||| || || | Sbjct 2101148 AAGATGCAGATCTTCGTCAAAACCCTCACGGGTAAGACCATTACTCTTGAGGTCGAGCCA 2101089 Query 22276 ACCGATACCGTGGACGATATCAAACAAAAAATTCAAGACAAGGAGGGTATTCCACCCGAT 22335 | ||||| | || || | || || || || ||||||||||| || || || ||| Sbjct 2101088 TCGGATACGATCGAGAATGTGAAGGCGAAGATCCAGGACAAGGAGGGCATCCCGCCGGAT 2101029 Query 22336 CAACAACGTCTTATATTTGCCGGCAAACAGTTAGAGGATCACCGCACCGTCTCCGATTAC 22395 || || ||||| || || ||||| || ||| | ||||| |||||| | ||||| ||| Sbjct 2101028 CAGCAGCGTCTGATCTTCGCCGGTAAGCAGCTGGAGGACGGACGCACCCTGTCCGACTAC 2100969 Query 22396 AACATTCAAAAAGAATCCACCATACATTTAGTTTTGCGATTGCGCGGAGG 22445 ||||| || || || || ||| | ||| | || | || ||||||| || Sbjct 2100968 AACATCCAGAAGGAGTCGACCCTTCATCTGGTGCTTCGCCTGCGCGGTGG 2100919 >seq20 Length=2346360 Score = 89.7 bits (98), Expect = 4e-13 Identities = 106/144 (74%), Gaps = 0/144 (0%) Strand=Plus/Minus Query 22303 AAAATTCAAGACAAGGAGGGTATTCCACCCGATCAACAACGTCTTATATTTGCCGGCAAA 22362 || || || ||||||||||||||||| || ||||| || ||| | || || ||||| || Sbjct 834888 AAGATCCAGGACAAGGAGGGTATTCCTCCAGATCAGCAGCGTTTGATCTTCGCCGGAAAG 834829 Query 22363 CAGTTAGAGGATCACCGCACCGTCTCCGATTACAACATTCAAAAAGAATCCACCATACAT 22422 ||| | |||||| || || | ||||| |||||||| || || || || ||| | || Sbjct 834828 CAGCTGGAGGATGGTCGTACTCTGTCCGACTACAACATCCAGAAGGAGTCGACCCTGCAC 834769 Query 22423 TTAGTTTTGCGATTGCGCGGAGGT 22446 || || | || |||| |||||| Sbjct 834768 TTGGTCCTCCGTCTGCGTGGAGGT 834745 Score = 87.8 bits (96), Expect = 2e-12 Identities = 105/143 (73%), Gaps = 0/143 (0%) Strand=Plus/Minus Query 22303 AAAATTCAAGACAAGGAGGGTATTCCACCCGATCAACAACGTCTTATATTTGCCGGCAAA 22362 || || || ||||||||||||||||| || ||||| || ||| | || || ||||| || Sbjct 834432 AAGATCCAGGACAAGGAGGGTATTCCTCCAGATCAGCAGCGTTTGATCTTCGCCGGAAAG 834373 Query 22363 CAGTTAGAGGATCACCGCACCGTCTCCGATTACAACATTCAAAAAGAATCCACCATACAT 22422 ||| | ||||| || || | ||||| |||||||| || || || || ||| | || Sbjct 834372 CAGCTGGAGGACGGTCGTACTCTGTCCGACTACAACATCCAGAAGGAGTCGACCCTGCAC 834313 Query 22423 TTAGTTTTGCGATTGCGCGGAGG 22445 || ||| | ||| | ||||| || Sbjct 834312 TTGGTTCTTCGACTTCGCGGGGG 834290 Score = 84.2 bits (92), Expect = 2e-11 Identities = 105/144 (73%), Gaps = 0/144 (0%) Strand=Plus/Minus Query 22303 AAAATTCAAGACAAGGAGGGTATTCCACCCGATCAACAACGTCTTATATTTGCCGGCAAA 22362 || || || ||||||||||||||||| || ||||| || ||| | || || ||||| || Sbjct 834660 AAGATCCAGGACAAGGAGGGTATTCCTCCAGATCAGCAGCGTTTGATCTTCGCCGGAAAG 834601 Query 22363 CAGTTAGAGGATCACCGCACCGTCTCCGATTACAACATTCAAAAAGAATCCACCATACAT 22422 ||| | ||||| || || | ||||| |||||||| || || || || ||| | || Sbjct 834600 CAGCTGGAGGACGGACGTACTCTGTCCGACTACAACATCCAGAAGGAGTCGACCCTGCAC 834541 Query 22423 TTAGTTTTGCGATTGCGCGGAGGT 22446 || || | || |||| |||||| Sbjct 834540 TTGGTCCTCCGTCTGCGTGGAGGT 834517 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 419608447168615