Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Anopheles_20stephensi_20[genbank_20GCA_5F000300775.2_202013-07-19] 23,371 sequences; 221,324,304 total letters Query= NC_008603.1 Length=321240 Score E Sequences producing significant alignments: (Bits) Value seq101 93.3 9e-14 seq127 91.5 3e-13 seq108 91.5 3e-13 seq49 91.5 3e-13 seq48 91.5 3e-13 seq12 91.5 3e-13 seq11 91.5 3e-13 seq7 91.5 3e-13 seq6 91.5 3e-13 seq1 91.5 3e-13 seq10 89.7 1e-12 >seq101 Length=540153 Score = 93.3 bits (102), Expect = 9e-14 Identities = 68/78 (87%), Gaps = 1/78 (1%) Strand=Plus/Minus Query 142504 GCCCGGTTAGCTCAGTCGGTAGAGCGCTAGACTCTTAATCTAGTGGTCGTGGGTTCGAGC 142563 |||||| |||||||||||||||||| ||||||||||||| |||||||||||||||| Sbjct 528831 GCCCGGCTAGCTCAGTCGGTAGAGCATGAGACTCTTAATCTCAGGGTCGTGGGTTCGAGC 528772 Query 142564 CCCACATCGGGCAGAAGT 142581 ||||| | |||| ||||| Sbjct 528771 CCCACGTTGGGC-GAAGT 528755 >seq127 Length=317029 Score = 91.5 bits (100), Expect = 3e-13 Identities = 65/75 (87%), Gaps = 0/75 (0%) Strand=Plus/Minus Query 142501 ATAGCCCGGTTAGCTCAGTCGGTAGAGCGCTAGACTCTTAATCTAGTGGTCGTGGGTTCG 142560 || |||||| |||||||||||||||||| ||||||||||||| ||||||||||||| Sbjct 116133 ATCGCCCGGCTAGCTCAGTCGGTAGAGCATGAGACTCTTAATCTCAGGGTCGTGGGTTCG 116074 Query 142561 AGCCCCACATCGGGC 142575 |||||||| | |||| Sbjct 116073 AGCCCCACGTTGGGC 116059 >seq108 Length=479664 Score = 91.5 bits (100), Expect = 3e-13 Identities = 64/73 (88%), Gaps = 0/73 (0%) Strand=Plus/Minus Query 142503 AGCCCGGTTAGCTCAGTCGGTAGAGCGCTAGACTCTTAATCTAGTGGTCGTGGGTTCGAG 142562 ||||||| |||||||||||||||||| ||||||||||||| ||||||||||||||| Sbjct 349257 AGCCCGGCTAGCTCAGTCGGTAGAGCATGAGACTCTTAATCTCAGGGTCGTGGGTTCGAG 349198 Query 142563 CCCCACATCGGGC 142575 |||||| | |||| Sbjct 349197 CCCCACGTTGGGC 349185 >seq49 Length=1325362 Score = 91.5 bits (100), Expect = 3e-13 Identities = 64/73 (88%), Gaps = 0/73 (0%) Strand=Plus/Minus Query 142503 AGCCCGGTTAGCTCAGTCGGTAGAGCGCTAGACTCTTAATCTAGTGGTCGTGGGTTCGAG 142562 ||||||| |||||||||||||||||| ||||||||||||| ||||||||||||||| Sbjct 190186 AGCCCGGCTAGCTCAGTCGGTAGAGCATGAGACTCTTAATCTCAGGGTCGTGGGTTCGAG 190127 Query 142563 CCCCACATCGGGC 142575 |||||| | |||| Sbjct 190126 CCCCACGTTGGGC 190114 >seq48 Length=1332325 Score = 91.5 bits (100), Expect = 3e-13 Identities = 64/73 (88%), Gaps = 0/73 (0%) Strand=Plus/Plus Query 142503 AGCCCGGTTAGCTCAGTCGGTAGAGCGCTAGACTCTTAATCTAGTGGTCGTGGGTTCGAG 142562 ||||||| |||||||||||||||||| ||||||||||||| ||||||||||||||| Sbjct 863093 AGCCCGGCTAGCTCAGTCGGTAGAGCATGAGACTCTTAATCTCAGGGTCGTGGGTTCGAG 863152 Query 142563 CCCCACATCGGGC 142575 |||||| | |||| Sbjct 863153 CCCCACGTTGGGC 863165 >seq12 Length=3035404 Score = 91.5 bits (100), Expect = 3e-13 Identities = 64/73 (88%), Gaps = 0/73 (0%) Strand=Plus/Plus Query 142503 AGCCCGGTTAGCTCAGTCGGTAGAGCGCTAGACTCTTAATCTAGTGGTCGTGGGTTCGAG 142562 ||||||| |||||||||||||||||| ||||||||||||| ||||||||||||||| Sbjct 2956021 AGCCCGGCTAGCTCAGTCGGTAGAGCATGAGACTCTTAATCTCAGGGTCGTGGGTTCGAG 2956080 Query 142563 CCCCACATCGGGC 142575 |||||| | |||| Sbjct 2956081 CCCCACGTTGGGC 2956093 >seq11 Length=3233111 Score = 91.5 bits (100), Expect = 3e-13 Identities = 64/73 (88%), Gaps = 0/73 (0%) Strand=Plus/Minus Query 142503 AGCCCGGTTAGCTCAGTCGGTAGAGCGCTAGACTCTTAATCTAGTGGTCGTGGGTTCGAG 142562 ||||||| |||||||||||||||||| ||||||||||||| ||||||||||||||| Sbjct 1718731 AGCCCGGCTAGCTCAGTCGGTAGAGCATGAGACTCTTAATCTCAGGGTCGTGGGTTCGAG 1718672 Query 142563 CCCCACATCGGGC 142575 |||||| | |||| Sbjct 1718671 CCCCACGTTGGGC 1718659 >seq7 Length=4015228 Score = 91.5 bits (100), Expect = 3e-13 Identities = 240/360 (67%), Gaps = 16/360 (4%) Strand=Plus/Minus Query 218656 AAGGTCGCTCAGTTTTCTGGTTATGTATCCGAAATTTCTGGCTACCATCACGGTGAGCAG 218715 ||||| || ||| | |||| | || | |||| || | ||||| |||||||||||| Sbjct 169235 AAGGTGGCCCAGCTGGCTGGATCGGTGGCAGAAAAGTCGGCGTACCACCACGGTGAGCAG 169176 Query 218716 AG--TCTGCAGGGTGCCATTGTAGGCATGGCACAGGACTATGTGGGCAGTAACAACATGA 218773 ||||| |||| | | |||| ||| | || || ||||| |||||||| | Sbjct 169175 TCGCTCTGCTCCA--CCATCATCAACCTGGCGCAGAATTACGTCGGCAGCAACAACATCA 169118 Query 218774 ACTTGCTGCTCCCCAACGGTCAGTTTGGTTCTCGTCTATTGGGTGGAAAGGATAGTGCTT 218833 || ||||| || ||| ||||||||| | || || || |||||||||||||| Sbjct 169117 ACCTGCTGTATCCGGGCGGCCAGTTTGGTACGCGCCTGACCGGCGGAAAGGATAGTGC-- 169060 Query 218834 CTGCC--AGGTATATCTTTACAAAGTTGTCGCCCGTGACGCGCCAGGTGTTCAATCAGGC 218891 | ||| ||||| ||||| || | | ||||| |||||||||| | || | | | Sbjct 169059 CAGCCCGAGGTACATCTTCACCATGATGTCGGTGCTGACGCGCCACATCTTTCACCCGCT 169000 Query 218892 CGATGATGTGCTCCTTAAGTATC---TTGAGGACGATGGTTCTTCG-ATTGAGCCCGAGT 218947 || ||| ||| || |||| | | |||||| | || || || || || | || Sbjct 168999 GGACGATCCGCTGCTCGAGTACCAGTTCGAGGACAA----TCAGCGCATCGAACCGGTGT 168944 Query 218948 GGTATGTGCCTGCTATTCCGTTTTTGCTCGTAAATGGTGCCAATGGTATCGGGACAGGGT 219007 ||||| |||| |||||| | |||| | || ||||| | |||||||| || |||| Sbjct 168943 GGTATTTGCCCATCATTCCGATGCTGCTGATCAACGGTGCGGAAGGTATCGGTACCGGGT 168884 >seq6 Length=4219845 Score = 91.5 bits (100), Expect = 3e-13 Identities = 64/73 (88%), Gaps = 0/73 (0%) Strand=Plus/Minus Query 142503 AGCCCGGTTAGCTCAGTCGGTAGAGCGCTAGACTCTTAATCTAGTGGTCGTGGGTTCGAG 142562 ||||||| |||||||||||||||||| ||||||||||||| ||||||||||||||| Sbjct 2661799 AGCCCGGCTAGCTCAGTCGGTAGAGCATGAGACTCTTAATCTCAGGGTCGTGGGTTCGAG 2661740 Query 142563 CCCCACATCGGGC 142575 |||||| | |||| Sbjct 2661739 CCCCACGTTGGGC 2661727 Score = 89.7 bits (98), Expect = 1e-12 Identities = 63/72 (88%), Gaps = 0/72 (0%) Strand=Plus/Plus Query 142504 GCCCGGTTAGCTCAGTCGGTAGAGCGCTAGACTCTTAATCTAGTGGTCGTGGGTTCGAGC 142563 |||||| |||||||||||||||||| ||||||||||||| |||||||||||||||| Sbjct 2665518 GCCCGGCTAGCTCAGTCGGTAGAGCATGAGACTCTTAATCTCAGGGTCGTGGGTTCGAGC 2665577 Query 142564 CCCACATCGGGC 142575 ||||| | |||| Sbjct 2665578 CCCACGTTGGGC 2665589 >seq1 Length=5975090 Score = 91.5 bits (100), Expect = 3e-13 Identities = 64/73 (88%), Gaps = 0/73 (0%) Strand=Plus/Minus Query 142503 AGCCCGGTTAGCTCAGTCGGTAGAGCGCTAGACTCTTAATCTAGTGGTCGTGGGTTCGAG 142562 ||||||| |||||||||||||||||| ||||||||||||| ||||||||||||||| Sbjct 4303771 AGCCCGGCTAGCTCAGTCGGTAGAGCATGAGACTCTTAATCTCAGGGTCGTGGGTTCGAG 4303712 Query 142563 CCCCACATCGGGC 142575 |||||| | |||| Sbjct 4303711 CCCCACGTTGGGC 4303699 >seq10 Length=3481139 Score = 89.7 bits (98), Expect = 1e-12 Identities = 63/72 (88%), Gaps = 0/72 (0%) Strand=Plus/Minus Query 142504 GCCCGGTTAGCTCAGTCGGTAGAGCGCTAGACTCTTAATCTAGTGGTCGTGGGTTCGAGC 142563 |||||| |||||||||||||||||| ||||||||||||| |||||||||||||||| Sbjct 615048 GCCCGGCTAGCTCAGTCGGTAGAGCATGAGACTCTTAATCTCAGGGTCGTGGGTTCGAGC 614989 Query 142564 CCCACATCGGGC 142575 ||||| | |||| Sbjct 614988 CCCACGTTGGGC 614977 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1027529023585011