Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Anopheles_20stephensi_20[genbank_20GCA_5F000300775.2_202013-07-19] 23,371 sequences; 221,324,304 total letters Query= NC_008724.1 Length=288047 Score E Sequences producing significant alignments: (Bits) Value seq72 165 2e-35 seq1 158 2e-33 seq6 149 1e-30 seq17 86.0 1e-11 >seq72 Length=881775 Score = 165 bits (182), Expect = 2e-35 Identities = 351/521 (67%), Gaps = 10/521 (2%) Strand=Plus/Plus Query 268209 CCCCAGTTGCAATCACAAAGTCCTCTGGC---TCAGGAGACTGGAGCATTTTCCACATTG 268265 |||| || ||||| ||||| || || ||| || | ||| | ||| |||||| | Sbjct 354151 CCCCGGTAGCAATGACAAAATCTTCCGGCCGTTCCTG---CTGCATCATCAGCCACATCG 354207 Query 268266 CTTCGACATAGTCCCGCGCATGGCCCCAATCGCGCTTTGCGTCCATGTTCCCGAGGAACA 268325 |||| || ||||| || |||||||| || ||||| | ||||| || || || || Sbjct 354208 CTTCCACGTAGTCTTTGGCGTGGCCCCAGTCACGCTTCGAGTCCAGATTACCCAGCTCCA 354267 Query 268326 GGCATTTCTGCTTGCCGAGCTTCACGCGTGCAAGACCG--CGAGTGATTTTTCGGGTCAC 268383 || | | |||| |||||| | |||| ||| || ||||| || || || || Sbjct 354268 GGTACTCTTGCTGTCCGAGCGAAATCTTCGCAA--CCGAACGGGTGATCTTGCGTGTAAC 354325 Query 268384 GAACGTCTCGCCACGTAGAGGGCTCTCGTGGTTGAAGAGGATGCCGTTGCACGCGAACAT 268443 ||| | || || || | || ||||||||||| ||||| |||||||| |||||||| Sbjct 354326 GAAGTTTTCTCCTCGGCGCGGTGATTCGTGGTTGAAAAGGATCCCGTTGCAGGCGAACAT 354385 Query 268444 GCCATATGCCTCACGGTAGTTCACGACCGTCCAGTATGCAAACATCTTTGCAACTGCGTA 268503 | || || || || ||||| | || ||||||| | ||||||||||| ||||| Sbjct 354386 GTTGTACGCTTCGCGATAGTTTATCACAATCCAGTAACCGTACATCTTTGCACAGGCGTA 354445 Query 268504 CGGAGAACGTGGATGGAAGGGCGTCGTGATCTTTTGAGGGATTTCTCGGACTTTGCCAAA 268563 ||| || ||||| | ||| || ||| | || || || |||| || ||||| | Sbjct 354446 CGGTGAGCGTGGGTAGAACGGTGTCTTTTCGTTCTGCGGCGTTTCAGCCACCTTGCCGTA 354505 Query 268564 GAGCTCGGAGGTCGATGCTTGGTAGAACTTTGTTGTTTTTTCGAGACCGCAGATTCGGAT 268623 || || ||||| || ||||||||||| || ||||| | || | | ||||| Sbjct 354506 CAGTTCCGAGGTGGACGCTTGGTAGAAGCGGACCGTCTTTTCCTGCCCCACGGTACGGAT 354565 Query 268624 TGCCTCGAGCAAACGAAGAGTTCCCATGCCATCCACGTCCGCTGTATACTCCGGCATCTC 268683 || ||||||| || || || || | ||||||| || || || || || || || Sbjct 354566 CGCATCGAGCAGCCGGAGCGTACCGACCGCATCCACCTCGGCCGTGTATTCGCTCAAATC 354625 Query 268684 GAATGACACCTGGACATGGCTCTGGGCGCCCAGGTTATAAA 268724 ||| || | | ||||| || |||||| | ||||| |||| Sbjct 354626 GAACGAAATTTTCACATGACTTTGGGCGGCTAGGTTGTAAA 354666 >seq1 Length=5975090 Score = 158 bits (174), Expect = 2e-33 Identities = 171/227 (75%), Gaps = 0/227 (0%) Strand=Plus/Minus Query 68235 CCTCCGCGAAGGCGCAATACCAAGTGTAGCGTGGACTCTTTTTGGATGTTATAATCGGAG 68294 || || || || || | |||| || || ||||| || || ||||||||||| || || Sbjct 5043160 CCACCACGCAGACGAAGGACCAGATGGAGGGTGGATTCCTTCTGGATGTTATAGTCCGAC 5043101 Query 68295 AGTGTCCTCCCATCTTCTAACTGCTTCCCGGCGAATATGAGTCTTTGTTGGTCGGGTGGA 68354 || || | |||||||| | |||||| ||||| || || || | || || || || || Sbjct 5043100 AGGGTGCGGCCATCTTCCAGCTGCTTGCCGGCAAAGATCAGACGCTGCTGATCTGGCGGG 5043041 Query 68355 ATGCCTTCCTTGTCTTGAATCTTTGCCTTGACGGCCTCGATGGTGTCTGCTGATTCTACT 68414 || || |||||||| |||||||| ||||| || |||||||||||| | || || || Sbjct 5043040 ATTCCCTCCTTGTCCTGAATCTTGGCCTTCACATTCTCGATGGTGTCGGATGGCTCAACC 5042981 Query 68415 TCCAAGGTGATGGTTTTTCCCGTGAGGGTCTTGACGAATATCTGCAT 68461 || | ||||||||| ||||| || || ||||||||||| |||||||| Sbjct 5042980 TCGAGGGTGATGGTCTTTCCGGTCAGAGTCTTGACGAAGATCTGCAT 5042934 Score = 154 bits (170), Expect = 3e-32 Identities = 174/233 (75%), Gaps = 0/233 (0%) Strand=Plus/Minus Query 68229 TAATTTCCTCCGCGAAGGCGCAATACCAAGTGTAGCGTGGACTCTTTTTGGATGTTATAA 68288 ||| | || || || || || | |||| || || ||||| || || ||||||||||| Sbjct 5043394 TAAATACCACCACGCAGACGAAGGACCAGATGGAGGGTGGATTCCTTCTGGATGTTATAG 5043335 Query 68289 TCGGAGAGTGTCCTCCCATCTTCTAACTGCTTCCCGGCGAATATGAGTCTTTGTTGGTCG 68348 || || || || | |||||||| | |||||| || || || || || | || || || Sbjct 5043334 TCCGACAGGGTGCGGCCATCTTCCAGCTGCTTGCCAGCAAAGATCAGACGCTGCTGATCT 5043275 Query 68349 GGTGGAATGCCTTCCTTGTCTTGAATCTTTGCCTTGACGGCCTCGATGGTGTCTGCTGAT 68408 || || || || |||||||| |||||||| ||||| || |||||||||||| | || Sbjct 5043274 GGCGGGATTCCCTCCTTGTCCTGAATCTTGGCCTTCACATTCTCGATGGTGTCGGATGGC 5043215 Query 68409 TCTACTTCCAAGGTGATGGTTTTTCCCGTGAGGGTCTTGACGAATATCTGCAT 68461 || || || | ||||||||| ||||| || || ||||||||||| |||||||| Sbjct 5043214 TCAACCTCGAGGGTGATGGTCTTTCCGGTCAGAGTCTTGACGAAGATCTGCAT 5043162 Score = 143 bits (158), Expect = 5e-29 Identities = 168/227 (74%), Gaps = 0/227 (0%) Strand=Plus/Minus Query 68235 CCTCCGCGAAGGCGCAATACCAAGTGTAGCGTGGACTCTTTTTGGATGTTATAATCGGAG 68294 || || || || || | |||| || || ||||| || || ||||||||||| || || Sbjct 5042932 CCACCACGCAGACGAAGGACCAGATGGAGGGTGGATTCCTTCTGGATGTTATAGTCCGAC 5042873 Query 68295 AGTGTCCTCCCATCTTCTAACTGCTTCCCGGCGAATATGAGTCTTTGTTGGTCGGGTGGA 68354 || || | |||||||| | |||||| || || || || || | || || || || || Sbjct 5042872 AGGGTGCGGCCATCTTCCAGCTGCTTACCAGCAAAGATCAGACGCTGCTGATCTGGCGGG 5042813 Query 68355 ATGCCTTCCTTGTCTTGAATCTTTGCCTTGACGGCCTCGATGGTGTCTGCTGATTCTACT 68414 || || |||||||| |||||||| ||||| || |||||||||||| | || || || Sbjct 5042812 ATTCCCTCCTTGTCCTGAATCTTGGCCTTCACATTCTCGATGGTGTCGGATGGCTCAACC 5042753 Query 68415 TCCAAGGTGATGGTTTTTCCCGTGAGGGTCTTGACGAATATCTGCAT 68461 || | |||||| || ||||| || || ||||||||||| || ||||| Sbjct 5042752 TCAAGGGTGATAGTCTTTCCGGTCAGAGTCTTGACGAAGATTTGCAT 5042706 >seq6 Length=4219845 Score = 149 bits (164), Expect = 1e-30 Identities = 169/227 (74%), Gaps = 0/227 (0%) Strand=Plus/Plus Query 68235 CCTCCGCGAAGGCGCAATACCAAGTGTAGCGTGGACTCTTTTTGGATGTTATAATCGGAG 68294 || ||||| ||||| | |||| || || || ||||| || |||||||| || ||||| Sbjct 2100919 CCACCGCGCAGGCGAAGCACCAGATGAAGGGTCGACTCCTTCTGGATGTTGTAGTCGGAC 2100978 Query 68295 AGTGTCCTCCCATCTTCTAACTGCTTCCCGGCGAATATGAGTCTTTGTTGGTCGGGTGGA 68354 || || | || || || | |||||| |||||||| || || | || || || || || Sbjct 2100979 AGGGTGCGTCCGTCCTCCAGCTGCTTACCGGCGAAGATCAGACGCTGCTGATCCGGCGGG 2101038 Query 68355 ATGCCTTCCTTGTCTTGAATCTTTGCCTTGACGGCCTCGATGGTGTCTGCTGATTCTACT 68414 ||||| |||||||| || ||||| ||||| || |||||| || || | || || || Sbjct 2101039 ATGCCCTCCTTGTCCTGGATCTTCGCCTTCACATTCTCGATCGTATCCGATGGCTCGACC 2101098 Query 68415 TCCAAGGTGATGGTTTTTCCCGTGAGGGTCTTGACGAATATCTGCAT 68461 || | || ||||| || ||||||||||| |||||||| |||||||| Sbjct 2101099 TCAAGAGTAATGGTCTTACCCGTGAGGGTTTTGACGAAGATCTGCAT 2101145 >seq17 Length=2453200 Score = 86.0 bits (94), Expect = 1e-11 Identities = 101/137 (74%), Gaps = 0/137 (0%) Strand=Plus/Plus Query 195992 TGGGTCGTCTTTGACGAAATCCACTACATGTCCGACGATGCGCGTGGTACCGTGTGGGAA 196051 |||||||| || ||||| || || |||||| |||| | | ||||||| ||||||||| Sbjct 434710 TGGGTCGTATTCGACGAGATTCATTACATGCGCGACAAGGAGCGTGGTGTGGTGTGGGAA 434769 Query 196052 GAAAGCCTTATCCTCATCCCGGATACCATCCGCTGTGTCTTTTTGTCCGCGACTGTTCCC 196111 |||| || ||||| | ||||| | | | | || || || ||||||| || ||||| Sbjct 434770 GAAACGCTCATCCTGCTGCCGGACAACGTGCACTACGTGTTCCTGTCCGCCACGATTCCC 434829 Query 196112 AACGCCCGTGACTTTGC 196128 ||||| || | ||||| Sbjct 434830 AACGCACGCCAGTTTGC 434846 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 921353159536120