Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Anopheles_20stephensi_20[genbank_20GCA_5F000300775.2_202013-07-19] 23,371 sequences; 221,324,304 total letters Query= NC_009127.1 Length=295146 Score E Sequences producing significant alignments: (Bits) Value seq59 289 5e-73 seq24 201 2e-46 >seq59 Length=1145648 Score = 289 bits (320), Expect = 5e-73 Identities = 926/1424 (65%), Gaps = 58/1424 (4%) Strand=Plus/Plus Query 244090 GTTCACCACCTGAAACTCTCCCGACAGCACGCGGCGCTGGTAGAGGTTGCTGCTGAGCGG 244149 |||||||||||||||||| || || || || || || | ||| | |||| || ||| Sbjct 141083 GTTCACCACCTGAAACTCGCCGGAAAGTACACGCCGATTGTAAACGTTGGACGTGTACGG 141142 Query 244150 CTCGATGCTCTCCGTGTTGCCCAGTATCTGCGCCGTGCTCGCAGTCGGCATGGGCGACAC 244209 |||| | ||| |||| |||| || || ||||| || || ||||| || | || Sbjct 141143 TTCGAAGGACTCGTTGTTACCCAAGATTTGTGCCGTCGAAGCGGTAGGCATCGGTGCCAA 141202 Query 244210 CAGCAGACTGTTCCTCACGCCGTGCCTCTGGATGCGGAGTCTGAGCTCGTTCCAGTCCCA 244269 |||||| || | | ||||||| | || | | |||| ||| | ||| Sbjct 141203 CAGCAGCGAATTGCGGATGCCGTGCTTTGCAATTTTTTCCTTCAACTCGGCCCAATTCCA 141262 Query 244270 CATGCCCGAGAGGTCCTCGCGTTTGAGGCCCCACATGTCAAACTGCAGCAGCCCCTTGCT 244329 | |||| | |||| || |||||| || ||||||| | || ||||| Sbjct 141263 AAGATCCGACGGTTCCTTC---TT------CCACATTTCGTACTGCAGGATGCCTTTGCT 141313 Query 244330 GACGGGGCTGCCCTCGTAGGTCGGGTAGGGACCGTCGCGCTGGGCCAGCTTACAGCTCTC 244389 || || || || ||||| || ||| || |||||||| ||||| || ||||||| | Sbjct 141314 TACCGGACTCCCTTCGTACGTTTCGTACGGTCCGTCGCGGGCGGCCAACTCACAGCTCGC 141373 Query 244390 GTCGAGGGCGGCGTAGTAGATGGTCTCGAAGATCATCTTGTTCATGTCGCGGGCCTTGCC 244449 || | || |||||||||| || ||||| || | ||||| | |||||| | Sbjct 141374 TTCCAATGCTCCGTAGTAGATTGTTTCGAAAATTTGTTGGTTCAGCTTTTGGGCCTCCTC 141433 Query 244450 GCAGGTGAAGGGGATGCCCATCATCATGAAGACGTCGGCCAGTCCCTGCACGCCGATGCC 244509 || | | || || ||||| ||||| | ||||||| ||||| || ||||| || Sbjct 141434 GCTTTCGTACGGATAGCGCATCAAAATGAACGCATCGGCCATGCCCTGAACACCGATACC 141493 Query 244510 GATGGGTCTGTGTCGCTTGTTGGAGCGCATGGCTTCGGGCACGGGGTAAAAGTTGCCGTC 244569 ||| || ||||| ||| ||||||||||| | || || || || || || |||| || Sbjct 141494 GATCGGCCTGTGCCGCATGTTGGAGCGCTTCGCCTCCGGTACTGGATAGTAGTTTATATC 141553 Query 244570 GATCACCTTGTTGAGGTTGCGGGTGATCATGCGGACGACGTCGGCCAGCAGCTGAAAGTC 244629 ||| | ||||| || ||||| || | || |||| || |||| |||||| Sbjct 141554 GATAATTTTGTTCAGATTGCGCGTCAAAATCTTCGCGACATCCTTCAGCTTGGCAAAGTC 141613 Query 244630 GTACTCGTAGGGATCCTCGGCGATGGTGATCCTCACAAACTCGTTGAGGGCGACGCTGGC 244689 |||| | | ||| ||| |||||||| ||| || |||| ||| Sbjct 141614 GTACGTTTTG---TCC--------GGTT----TCACAAACATGTTCAGCGCGATCGAGGC 141658 Query 244690 CAGGTTGCAGACGGCCA---CCTCCTCCGAGTTGGTGTACTGGACAATCTCGGTGCAGAG 244746 || ||||| || || | | |||| ||| | ||||| || |||||||| || || Sbjct 141659 CAAATTGCACACCGCTATTTCATCCTTCGAC---GAGTACTCCACTATCTCGGTACACAG 141715 Query 244747 GTTACTGCACTTGATGGTGCCCAGGTGCTGGTGATTGGACTTGGCGTTGCAGGCGTCCTT 244806 || ||||| |||||||| | || ||| |||||| |||| |||||| || ||||| Sbjct 141716 ATTGGAACACTTTATGGTGCCGATGTTCTGCTGATTGCTCTTGCGGTTGCACGCATCCTT 141775 Query 244807 GTAGAGCATGAAGGGCCCCCCGGTCTCGAGCTGGGCGACGAGGACGCTGTTCCAGAGGTC 244866 ||| |||||| | || | || || || | ||| | ||| || | ||| ||||| Sbjct 141776 GTACAGCATGTACGGAACGCCCGTTTCCACCTGCGATTCGATGATGGCAAACCATAGGTC 141835 Query 244867 CCTAGCCTTGACC-GTCCTGCGAGCCTTGCCCTCTGCCTCGTAGCGGGTGTACAGGGCCT 244925 | ||||| ||| | | | | | || |||| ||||| | |||||||| || Sbjct 141836 CTGTGCCTTCACCTGGCGTATAAATCGACCCTCCTGC-TCGTACCCAGTGTACAGCTTCT 141894 Query 244926 CGAACTCGGGGCCCCAGACCTCGTCTAGGCCGGGGCACGACGCC-GGGCACATGAGACTC 244984 ||||||| |||||| || | | |||||||| | || |||||||| || ||| Sbjct 141895 CGAACTCTTCGCCCCAAGTGTCAGCCAATCCGGGGCA-GTCGTGTGGGCACATCAGGCTC 141953 Query 244985 CAC---TCGC-CGCCGTCCTTGACCCTCTGCATGAAGAGGTCGGGGATCCAGAGGGCCTG 245040 ||| ||| |||| ||| || | ||||||||| || || |||||||| ||||| | Sbjct 141954 CACATTTCGTTCGCC-TCC---ACACGCTGCATGAACAGATCCGGGATCCACAGGGCGTA 142009 Query 245041 GAAGAGGTCCCTGGTCCTCTGCTCGTCCGAGCCAGTGTTCTTCCTCAGCTCCAAAAAGTC 245100 ||| | ||| | || | | ||| ||| ||| ||||| ||| |||| |||| ||| || Sbjct 142010 GAACATGTCGCGGGCACGCACCTCCTCCTTGCCGGTGTTTTTCTTCAGATCCAGAAACTC 142069 Query 245101 AAAGACGTCGACGTGCCAGGGCTCCATGTAGACAGCGAGGGCGCCGGGCCGCTTGTTGCC 245160 || | || ||||||| || || | ||||| || | ||||||||||||||||||||| Sbjct 142070 GAATATATCCCCGTGCCATGGTTCGAGGTAGATGGCAAAGGCGCCGGGCCGCTTGTTGCC 142129 Query 245161 TCCCTGGTCCACCATCCTCTCGAGCGCGTTGAAGATGCGCAGGGTAGGCACTATGCCGTT 245220 ||||| ||||| || | |||| | | |||||| | ||||| | ||||| Sbjct 142130 ACCCTGATCCACGTACCGGGCCGTGTTGTTGTAAACGCGCAGCATCGGCACCAACCCGTT 142189 Query 245221 AGAGTGGCCGTTGGTGCCCTTGATGTAGGCGCCCTTGCCCCTGAGGTTGCTGATGGACAT 245280 || || || ||||| |||||| | || ||| | | | | | | | || Sbjct 142190 CGAAATCCCATTCGTGCCGGAGATGTACGTTCCTTTGGCGCGAATGCAGTGCACGTTCAG 142249 Query 245281 GCCTAGTCCGCCGGCGTGCTTGGAGATGAGGGCGCAGCTCTTGATGGTGTCTGCTATGCC 245340 || | |||||||| ||||| || || || || ||| | || || || || Sbjct 142250 CCCGATACCGCCGGCCGATTTGGAAATCAGTGCACACTGCTTTAGCGTATCGTAAATACC 142309 Query 245341 CTCCATGCTGTCCGACTTCATGTTGAGCAGAAAGCAGGAGGACAGCTGGGG-------CT 245393 ||| || ||||| | |||| | ||||||||||| || || ||||| || | Sbjct 142310 CTCAATACTGTCGTCCGACATGGTAAGCAGAAAGCAAGACGAAAGCTGCGGACGCTGCGT 142369 Query 245394 TGGGGCTGCACGAGTTGAACAGAGTGGGGCTGGCGTGGGTAAAGTAGCGGCTC-GAGAGG 245452 | ||| ||| |||| || || ||| ||||||||||||| |||| || || Sbjct 142370 AGCGGCCGCA-------AACATGGTCGGTGAGGCATGGGTAAAGTAGC-GCTCGGAAAGC 142421 Query 245453 AACCCGTACGTCTGGAGCAGAGCGTCGATGTTGTCGCCGTGGAT 245496 | |||||||| || ||| || |||| || ||||| || Sbjct 142422 AGATTGTACGTCTCGATGGCAGCATCAATGTCTTCACCGTGAAT 142465 >seq24 Length=2206587 Score = 201 bits (222), Expect = 2e-46 Identities = 286/400 (72%), Gaps = 7/400 (2%) Strand=Plus/Minus Query 42609 CTGTTCAAGGCCATGGAGACGATGCCCTGCATCAAGAAGAAGGCGGACTGGGCGCTCAAC 42668 ||||| || ||||| || ||| | || ||| | ||||||||||| ||||||||||| ||| Sbjct 1947815 CTGTTTAATGCCATCGAAACGCTACCGTGCGTGAAGAAGAAGGCAGACTGGGCGCTTAAC 1947756 Query 42669 TGGATCGAGAGTCCCGACGCAACGTTCGGCGAGAGGCTGGTAGCCTTTACCGCCGTCGAG 42728 |||||| ||| | || | || |||||| | |||| || ||| | ||||||||| Sbjct 1947755 TGGATCTCGAGCAAGAAGGCTAACTTTGGCGAGCGTGTGGTCGCATTTGCTGCCGTCGAG 1947696 Query 42729 GGCATCTTCTTCTCGGGCGCCTTCGCCTCCATCTTCTGGCTCAAGCAGAAGGTGTCG--A 42786 || ||||||||| ||| ||| || |||||||||||||||||| || ||| | | Sbjct 1947695 GGTATCTTCTTCAGCGGCAGCTTTGCGTCCATCTTCTGGCTCAAGAAGC--GTGGCCTTA 1947638 Query 42787 TGCCCGGACTCACCTTCTCGAACGAACTCATCAGCAGGGACGAGGGGCTGCATAGGGACT 42846 |||| || || |||||||||||||| || || ||||||||||| ||||| | || | Sbjct 1947637 TGCCGGGTCTTACCTTCTCGAACGAGCTGATTTCGAGGGACGAGGGATTGCATTGTGATT 1947578 Query 42847 TTGCCTGCCTCCTGTTCTCGAGCCACCTCAGGCACAAGCCCTCGAAGGAGCGGGTCCGGG 42906 | |||||||| ||||| | | || ||| ||||| ||||||||||| || || Sbjct 1947577 TCGCCTGCCTGATGTTC---AAGTATCTGGTGCAGAAGCCTTCGAAGGAGCGCGTGACGG 1947521 Query 42907 CCATCATCACGGAGGCCGTGGAGATCGAGAAGGAGTTCCTCACGCAGTCGCTGCCCGTGT 42966 |||||| || || || | ||||||| | || || | ||| | | ||||| || Sbjct 1947520 AGATCATCCGCGATGCGGTAGTGATCGAGCAAGAATTTTTGACGAAAGCCCTGCCGGTCG 1947461 Query 42967 CCCTGGTCGGCATGAACCACGACCTCATGTGCAAGTACAT 43006 || |||||||||| || || |||| ||||||| Sbjct 1947460 ATATGCTCGGCATGAATTGTGATCTGATGTCGCAGTACAT 1947421 Score = 129 bits (142), Expect = 1e-24 Identities = 184/255 (72%), Gaps = 8/255 (3%) Strand=Plus/Minus Query 42335 CTGGACCGCCGAGGAGATTGACCTGGCCAAGGACACGGCCGGCTGGGAGTCACTGT--CT 42392 |||||||| || ||| | ||||| | ||||||| | | |||||| || || | Sbjct 1948174 CTGGACCGTGGAAGAGGTAGACCTATCGAAGGACATGAAGGACTGGGACTCGCTAAAACC 1948115 Query 42393 GAG--AACGAAAAGTTTTTCCTCAAAAACATACTGGCCTTCTTCGCCGCCTCTGACGGCA 42450 ||| |||| | |||| ||| | | | ||||||||||| ||||| || ||||| | Sbjct 1948114 GAGCGAACGTCA--TTTTATCTCGCA--CGTGCTGGCCTTCTTTGCCGCGTCCGACGGTA 1948059 Query 42451 TAGTCAATGAGAACCTGGCCACCAGGTTCATGAAAGAGGTGCAGTACTTTGAGGCGCGCT 42510 | || || ||||| |||| | |||||| | ||||||||| |||||||||| Sbjct 1948058 TCGTGAACGAGAATCTGGTCGAACGGTTCAGCCAGGAGGTGCAGGTAACGGAGGCGCGCT 1947999 Query 42511 GCTTCTACGGCTTCCAGATAGCCATAGAGAACGTGCACTCTGAGGTGTACGCCAAACTGC 42570 ||||||||||||||||||| || || |||||||| ||| |||| ||||| | ||| Sbjct 1947998 GCTTCTACGGCTTCCAGATTGCGATGGAGAACGTCCACAGTGAGATGTACTCGCTGCTGA 1947939 Query 42571 TCAACACGTACATCC 42585 || |||||||||||| Sbjct 1947938 TCGACACGTACATCC 1947924 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 944063323106960