Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Anopheles_20stephensi_20[genbank_20GCA_5F000300775.2_202013-07-19]
23,371 sequences; 221,324,304 total letters
Query= NC_009898.1
Length=368683
Score E
Sequences producing significant alignments: (Bits) Value
seq1 154 3e-32
seq6 136 9e-27
seq57 129 1e-24
>seq1
Length=5975090
Score = 154 bits (170), Expect = 3e-32
Identities = 183/247 (74%), Gaps = 11/247 (4%)
Strand=Plus/Minus
Query 288235 ATTCATACATGT-----CCACCGCGGAGTCTAAGTACGAGATGAATCGTGCTTTCTTTTT 288289
|||||||||| | ||||| || || | ||| || ||||| | ||| ||| || |
Sbjct 5043405 ATTCATACATCTAAATACCACCACGCAGACGAAGGACCAGATGGAGGGTGGATTCCTTCT 5043346
Query 288290 GGATATTATAGTCGGCGAGCGTGCGTCCGTCTTCTAATTGTTTTCCTGCGAAGATCAGAC 288349
|||| |||||||| | || ||||| || ||||| | || || || || ||||||||||
Sbjct 5043345 GGATGTTATAGTCCGACAGGGTGCGGCCATCTTCCAGCTGCTTGCCAGCAAAGATCAGAC 5043286
Query 288350 GCTGTTGAGAATCTGG---GATTCCTTCTTTATCCTGGATTTTCGCTTTCACGTTTTCTA 288406
|||| ||| ||||| |||||| || || ||||| || || || ||||| || || |
Sbjct 5043285 GCTGCTGA---TCTGGCGGGATTCCCTCCTTGTCCTGAATCTTGGCCTTCACATTCTCGA 5043229
Query 288407 TAGAATCGCTCGATTCTACTTCGAGCGTGATCGTCTTCCCGGTCAGAGTCTTGACGAATA 288466
| | ||| | || || ||||| ||||| ||||| |||||||||||||||||||| |
Sbjct 5043228 TGGTGTCGGATGGCTCAACCTCGAGGGTGATGGTCTTTCCGGTCAGAGTCTTGACGAAGA 5043169
Query 288467 TCTGCAT 288473
|||||||
Sbjct 5043168 TCTGCAT 5043162
Score = 150 bits (166), Expect = 4e-31
Identities = 176/235 (75%), Gaps = 7/235 (3%)
Strand=Plus/Minus
Query 288242 CATGTCCACCGCGGAGTCTAAGTACGAGATGAATCGTGCTTTCTTTTTGGATATTATAGT 288301
|||| ||||| || || | ||| || ||||| | ||| ||| || ||||| |||||||
Sbjct 5043164 CATG-CCACCACGCAGACGAAGGACCAGATGGAGGGTGGATTCCTTCTGGATGTTATAGT 5043106
Query 288302 CGGCGAGCGTGCGTCCGTCTTCTAATTGTTTTCCTGCGAAGATCAGACGCTGTTGAGAAT 288361
| | || ||||| || ||||| | || || || || |||||||||||||| ||| |
Sbjct 5043105 CCGACAGGGTGCGGCCATCTTCCAGCTGCTTGCCGGCAAAGATCAGACGCTGCTGA---T 5043049
Query 288362 CTGG---GATTCCTTCTTTATCCTGGATTTTCGCTTTCACGTTTTCTATAGAATCGCTCG 288418
|||| |||||| || || ||||| || || || ||||| || || || | ||| |
Sbjct 5043048 CTGGCGGGATTCCCTCCTTGTCCTGAATCTTGGCCTTCACATTCTCGATGGTGTCGGATG 5042989
Query 288419 ATTCTACTTCGAGCGTGATCGTCTTCCCGGTCAGAGTCTTGACGAATATCTGCAT 288473
|| || ||||| ||||| ||||| |||||||||||||||||||| ||||||||
Sbjct 5042988 GCTCAACCTCGAGGGTGATGGTCTTTCCGGTCAGAGTCTTGACGAAGATCTGCAT 5042934
Score = 141 bits (156), Expect = 2e-28
Identities = 174/235 (74%), Gaps = 7/235 (3%)
Strand=Plus/Minus
Query 288242 CATGTCCACCGCGGAGTCTAAGTACGAGATGAATCGTGCTTTCTTTTTGGATATTATAGT 288301
|||| ||||| || || | ||| || ||||| | ||| ||| || ||||| |||||||
Sbjct 5042936 CATG-CCACCACGCAGACGAAGGACCAGATGGAGGGTGGATTCCTTCTGGATGTTATAGT 5042878
Query 288302 CGGCGAGCGTGCGTCCGTCTTCTAATTGTTTTCCTGCGAAGATCAGACGCTGTTGAGAAT 288361
| | || ||||| || ||||| | || || || || |||||||||||||| ||| |
Sbjct 5042877 CCGACAGGGTGCGGCCATCTTCCAGCTGCTTACCAGCAAAGATCAGACGCTGCTGA---T 5042821
Query 288362 CTGG---GATTCCTTCTTTATCCTGGATTTTCGCTTTCACGTTTTCTATAGAATCGCTCG 288418
|||| |||||| || || ||||| || || || ||||| || || || | ||| |
Sbjct 5042820 CTGGCGGGATTCCCTCCTTGTCCTGAATCTTGGCCTTCACATTCTCGATGGTGTCGGATG 5042761
Query 288419 ATTCTACTTCGAGCGTGATCGTCTTCCCGGTCAGAGTCTTGACGAATATCTGCAT 288473
|| || || || ||||| ||||| |||||||||||||||||||| || |||||
Sbjct 5042760 GCTCAACCTCAAGGGTGATAGTCTTTCCGGTCAGAGTCTTGACGAAGATTTGCAT 5042706
>seq6
Length=4219845
Score = 136 bits (150), Expect = 9e-27
Identities = 169/230 (73%), Gaps = 6/230 (3%)
Strand=Plus/Plus
Query 288247 CCACCGCGGAGTCTAAGTACGAGATGAATCGTGCTTTCTTTTTGGATATTATAGTCGGCG 288306
|||||||| || | ||| || ||||||| || || || ||||| || |||||||
Sbjct 2100919 CCACCGCGCAGGCGAAGCACCAGATGAAGGGTCGACTCCTTCTGGATGTTGTAGTCGGAC 2100978
Query 288307 AGCGTGCGTCCGTCTTCTAATTGTTTTCCTGCGAAGATCAGACGCTGTTGAGAATCTGGG 288366
|| ||||||||||| || | || || || ||||||||||||||||| ||| |||
Sbjct 2100979 AGGGTGCGTCCGTCCTCCAGCTGCTTACCGGCGAAGATCAGACGCTGCTGATCCGGCGGG 2101038
Query 288367 ATTCCTTCTTTATCCTGGATTTTCGCTTTCACGTTTTCTATAGAATCGCTCGAT---TCT 288423
|| || || || |||||||| ||||| ||||| || || || | ||| |||| ||
Sbjct 2101039 ATGCCCTCCTTGTCCTGGATCTTCGCCTTCACATTCTCGATCGTATC---CGATGGCTCG 2101095
Query 288424 ACTTCGAGCGTGATCGTCTTCCCGGTCAGAGTCTTGACGAATATCTGCAT 288473
|| || || || || ||||| || || || || |||||||| ||||||||
Sbjct 2101096 ACCTCAAGAGTAATGGTCTTACCCGTGAGGGTTTTGACGAAGATCTGCAT 2101145
>seq57
Length=1190389
Score = 129 bits (142), Expect = 1e-24
Identities = 169/233 (73%), Gaps = 6/233 (3%)
Strand=Plus/Plus
Query 288247 CCACCGCGGAGTCTAAGTACGAGATGAATCGTGCTTTCTTTTTGGATATTATAGTCGGCG 288306
||||||||||||| || || ||||||| || ||| || || || || ||||| |
Sbjct 631298 CCACCGCGGAGTCGCAGCACCAGATGAAGGGTAGATTCCTTCTGAATGTTGTAGTCCGAC 631357
Query 288307 AGCGTGCGTCCGTCTTCTAATTGTTTTCCTGCGAAGATCAGACGCTGTTGAGAATCT--- 288363
|| ||||| || || || | || || || |||||||| |||||||| || ||||
Sbjct 631358 AGGGTGCGACCATCCTCCAGCTGCTTGCCGGCGAAGATGAGACGCTGCTG---ATCTGGA 631414
Query 288364 GGGATTCCTTCTTTATCCTGGATTTTCGCTTTCACGTTTTCTATAGAATCGCTCGATTCT 288423
|| |||||||| ||||||||||| || || ||||| || || || | || | ||
Sbjct 631415 GGAATTCCTTCCTTATCCTGGATCTTGGCCTTCACATTCTCGATCGTGTCCGAAGGCTCG 631474
Query 288424 ACTTCGAGCGTGATCGTCTTCCCGGTCAGAGTCTTGACGAATATCTGCATTAT 288476
|| || || ||||| ||||| ||||| || || || ||||| |||||||| ||
Sbjct 631475 ACCTCAAGTGTGATGGTCTTGCCGGTGAGTGTTTTCACGAAAATCTGCATGAT 631527
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 1179301163180538
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |