Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Anopheles_20stephensi_20[genbank_20GCA_5F000300775.2_202013-07-19] 23,371 sequences; 221,324,304 total letters Query= NC_009898.1 Length=368683 Score E Sequences producing significant alignments: (Bits) Value seq1 154 3e-32 seq6 136 9e-27 seq57 129 1e-24 >seq1 Length=5975090 Score = 154 bits (170), Expect = 3e-32 Identities = 183/247 (74%), Gaps = 11/247 (4%) Strand=Plus/Minus Query 288235 ATTCATACATGT-----CCACCGCGGAGTCTAAGTACGAGATGAATCGTGCTTTCTTTTT 288289 |||||||||| | ||||| || || | ||| || ||||| | ||| ||| || | Sbjct 5043405 ATTCATACATCTAAATACCACCACGCAGACGAAGGACCAGATGGAGGGTGGATTCCTTCT 5043346 Query 288290 GGATATTATAGTCGGCGAGCGTGCGTCCGTCTTCTAATTGTTTTCCTGCGAAGATCAGAC 288349 |||| |||||||| | || ||||| || ||||| | || || || || |||||||||| Sbjct 5043345 GGATGTTATAGTCCGACAGGGTGCGGCCATCTTCCAGCTGCTTGCCAGCAAAGATCAGAC 5043286 Query 288350 GCTGTTGAGAATCTGG---GATTCCTTCTTTATCCTGGATTTTCGCTTTCACGTTTTCTA 288406 |||| ||| ||||| |||||| || || ||||| || || || ||||| || || | Sbjct 5043285 GCTGCTGA---TCTGGCGGGATTCCCTCCTTGTCCTGAATCTTGGCCTTCACATTCTCGA 5043229 Query 288407 TAGAATCGCTCGATTCTACTTCGAGCGTGATCGTCTTCCCGGTCAGAGTCTTGACGAATA 288466 | | ||| | || || ||||| ||||| ||||| |||||||||||||||||||| | Sbjct 5043228 TGGTGTCGGATGGCTCAACCTCGAGGGTGATGGTCTTTCCGGTCAGAGTCTTGACGAAGA 5043169 Query 288467 TCTGCAT 288473 ||||||| Sbjct 5043168 TCTGCAT 5043162 Score = 150 bits (166), Expect = 4e-31 Identities = 176/235 (75%), Gaps = 7/235 (3%) Strand=Plus/Minus Query 288242 CATGTCCACCGCGGAGTCTAAGTACGAGATGAATCGTGCTTTCTTTTTGGATATTATAGT 288301 |||| ||||| || || | ||| || ||||| | ||| ||| || ||||| ||||||| Sbjct 5043164 CATG-CCACCACGCAGACGAAGGACCAGATGGAGGGTGGATTCCTTCTGGATGTTATAGT 5043106 Query 288302 CGGCGAGCGTGCGTCCGTCTTCTAATTGTTTTCCTGCGAAGATCAGACGCTGTTGAGAAT 288361 | | || ||||| || ||||| | || || || || |||||||||||||| ||| | Sbjct 5043105 CCGACAGGGTGCGGCCATCTTCCAGCTGCTTGCCGGCAAAGATCAGACGCTGCTGA---T 5043049 Query 288362 CTGG---GATTCCTTCTTTATCCTGGATTTTCGCTTTCACGTTTTCTATAGAATCGCTCG 288418 |||| |||||| || || ||||| || || || ||||| || || || | ||| | Sbjct 5043048 CTGGCGGGATTCCCTCCTTGTCCTGAATCTTGGCCTTCACATTCTCGATGGTGTCGGATG 5042989 Query 288419 ATTCTACTTCGAGCGTGATCGTCTTCCCGGTCAGAGTCTTGACGAATATCTGCAT 288473 || || ||||| ||||| ||||| |||||||||||||||||||| |||||||| Sbjct 5042988 GCTCAACCTCGAGGGTGATGGTCTTTCCGGTCAGAGTCTTGACGAAGATCTGCAT 5042934 Score = 141 bits (156), Expect = 2e-28 Identities = 174/235 (74%), Gaps = 7/235 (3%) Strand=Plus/Minus Query 288242 CATGTCCACCGCGGAGTCTAAGTACGAGATGAATCGTGCTTTCTTTTTGGATATTATAGT 288301 |||| ||||| || || | ||| || ||||| | ||| ||| || ||||| ||||||| Sbjct 5042936 CATG-CCACCACGCAGACGAAGGACCAGATGGAGGGTGGATTCCTTCTGGATGTTATAGT 5042878 Query 288302 CGGCGAGCGTGCGTCCGTCTTCTAATTGTTTTCCTGCGAAGATCAGACGCTGTTGAGAAT 288361 | | || ||||| || ||||| | || || || || |||||||||||||| ||| | Sbjct 5042877 CCGACAGGGTGCGGCCATCTTCCAGCTGCTTACCAGCAAAGATCAGACGCTGCTGA---T 5042821 Query 288362 CTGG---GATTCCTTCTTTATCCTGGATTTTCGCTTTCACGTTTTCTATAGAATCGCTCG 288418 |||| |||||| || || ||||| || || || ||||| || || || | ||| | Sbjct 5042820 CTGGCGGGATTCCCTCCTTGTCCTGAATCTTGGCCTTCACATTCTCGATGGTGTCGGATG 5042761 Query 288419 ATTCTACTTCGAGCGTGATCGTCTTCCCGGTCAGAGTCTTGACGAATATCTGCAT 288473 || || || || ||||| ||||| |||||||||||||||||||| || ||||| Sbjct 5042760 GCTCAACCTCAAGGGTGATAGTCTTTCCGGTCAGAGTCTTGACGAAGATTTGCAT 5042706 >seq6 Length=4219845 Score = 136 bits (150), Expect = 9e-27 Identities = 169/230 (73%), Gaps = 6/230 (3%) Strand=Plus/Plus Query 288247 CCACCGCGGAGTCTAAGTACGAGATGAATCGTGCTTTCTTTTTGGATATTATAGTCGGCG 288306 |||||||| || | ||| || ||||||| || || || ||||| || ||||||| Sbjct 2100919 CCACCGCGCAGGCGAAGCACCAGATGAAGGGTCGACTCCTTCTGGATGTTGTAGTCGGAC 2100978 Query 288307 AGCGTGCGTCCGTCTTCTAATTGTTTTCCTGCGAAGATCAGACGCTGTTGAGAATCTGGG 288366 || ||||||||||| || | || || || ||||||||||||||||| ||| ||| Sbjct 2100979 AGGGTGCGTCCGTCCTCCAGCTGCTTACCGGCGAAGATCAGACGCTGCTGATCCGGCGGG 2101038 Query 288367 ATTCCTTCTTTATCCTGGATTTTCGCTTTCACGTTTTCTATAGAATCGCTCGAT---TCT 288423 || || || || |||||||| ||||| ||||| || || || | ||| |||| || Sbjct 2101039 ATGCCCTCCTTGTCCTGGATCTTCGCCTTCACATTCTCGATCGTATC---CGATGGCTCG 2101095 Query 288424 ACTTCGAGCGTGATCGTCTTCCCGGTCAGAGTCTTGACGAATATCTGCAT 288473 || || || || || ||||| || || || || |||||||| |||||||| Sbjct 2101096 ACCTCAAGAGTAATGGTCTTACCCGTGAGGGTTTTGACGAAGATCTGCAT 2101145 >seq57 Length=1190389 Score = 129 bits (142), Expect = 1e-24 Identities = 169/233 (73%), Gaps = 6/233 (3%) Strand=Plus/Plus Query 288247 CCACCGCGGAGTCTAAGTACGAGATGAATCGTGCTTTCTTTTTGGATATTATAGTCGGCG 288306 ||||||||||||| || || ||||||| || ||| || || || || ||||| | Sbjct 631298 CCACCGCGGAGTCGCAGCACCAGATGAAGGGTAGATTCCTTCTGAATGTTGTAGTCCGAC 631357 Query 288307 AGCGTGCGTCCGTCTTCTAATTGTTTTCCTGCGAAGATCAGACGCTGTTGAGAATCT--- 288363 || ||||| || || || | || || || |||||||| |||||||| || |||| Sbjct 631358 AGGGTGCGACCATCCTCCAGCTGCTTGCCGGCGAAGATGAGACGCTGCTG---ATCTGGA 631414 Query 288364 GGGATTCCTTCTTTATCCTGGATTTTCGCTTTCACGTTTTCTATAGAATCGCTCGATTCT 288423 || |||||||| ||||||||||| || || ||||| || || || | || | || Sbjct 631415 GGAATTCCTTCCTTATCCTGGATCTTGGCCTTCACATTCTCGATCGTGTCCGAAGGCTCG 631474 Query 288424 ACTTCGAGCGTGATCGTCTTCCCGGTCAGAGTCTTGACGAATATCTGCATTAT 288476 || || || ||||| ||||| ||||| || || || ||||| |||||||| || Sbjct 631475 ACCTCAAGTGTGATGGTCTTGCCGGTGAGTGTTTTCACGAAAATCTGCATGAT 631527 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1179301163180538