Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Anopheles_20stephensi_20[genbank_20GCA_5F000300775.2_202013-07-19] 23,371 sequences; 221,324,304 total letters Query= NC_010191.2 Length=186713 Score E Sequences producing significant alignments: (Bits) Value seq59 116 4e-21 seq72 96.9 4e-15 seq7 82.4 9e-11 >seq59 Length=1145648 Score = 116 bits (128), Expect = 4e-21 Identities = 629/986 (64%), Gaps = 27/986 (3%) Strand=Plus/Plus Query 113948 TTGGTCGTGTATGGCTCAAAGCACTCATTGTTACCCAAGATTTGGGCGGTGGAGGCTGTG 114007 |||| |||||| || || ||| |||| ||||||||||||||||| || || || || || Sbjct 141129 TTGGACGTGTACGGTTCGAAGGACTCGTTGTTACCCAAGATTTGTGCCGTCGAAGCGGTA 141188 Query 114008 GGCATGGGTGCCATGAGAAGGCTGTTACGGAGACCCT--TTTCCCTAATGCGTTCCTTGA 114065 ||||| ||||||| || || || |||| || | ||| | ||| |||||| | Sbjct 141189 GGCATCGGTGCCAACAGCAGCGAATTGCGGATGCCGTGCTTTGC--AATTTTTTCCTTCA 141246 Query 114066 GGGCGTCCCAGT--CGTAGTTGAGCTTTGTCTCCCCCTGCCACATATCAAACTGGAGGAT 114123 || |||| | | || | | || ||| || |||||| || |||| ||||| Sbjct 141247 ACTCGGCCCAATTCCAAAGATCCGACG-GT-TCCTTCTTCCACATTTCGTACTGCAGGAT 141304 Query 114124 ACCTTGGGAGGCTGGCGATCCCTCAAATGTCTCGTATGGGCCCTCAACCTCCGCCAATTC 114183 |||| | | || || || | || ||||| || || || | ||||| || Sbjct 141305 GCCTTTGCTTACCGGACTCCCTTCGTACGTTTCGTACGGTCCGTCGCGGGCGGCCAACTC 141364 Query 114184 GGAGCTCGCCTCGAGGGCTGCGTGATACATTGTCTCAAAAATGCGAGCATTCATTGCCTT 114243 ||||||| || | ||| ||| || ||||| || ||||| | |||| || || Sbjct 141365 ACAGCTCGCTTCCAATGCTCCGTAGTAGATTGTTTCGAAAATTTGTTGGTTCA--GCTTT 141422 Query 114244 --GGCCTCGTCGGAATCAAACGCGAGTCGGCA-CAAAATAAATACATCCGCGAGACCTTG 114300 |||||| ||| || ||| || ||| |||||| || |||| || | || || Sbjct 141423 TGGGCCTCCTCGCTTTCGTACG-GATAGCGCATCAAAATGAACGCATCGGCCATGCCCTG 141481 Query 114301 GACACCGAGGCCAATTGGGCGATGTCTCATATTAGACTTTCGAGCGGTCTCC---ACGGG 114357 ||||||| || || || | || | ||| || || || | |||| || || Sbjct 141482 AACACCGATACCGATCGGCCTGTGCCGCATGTTGGAG---CGCTTCGCCTCCGGTACTGG 141538 Query 114358 ATAAAAATTCCTATCGATAACCCTATTTAGATTTTTGGTGACAACCTTTGTGATTTCATG 114417 ||| | || ||||||||| | || ||||| || | || ||| | || || | Sbjct 141539 ATAGTAGTTTATATCGATAATTTTGTTCAGATTGCGCGTCAAAATCTTCGCGACATCCTT 141598 Query 114418 AAGCTTTTCGTAATCAAAACTGCGAGTCTCTTCATTGACATACTTAGGAAGGGCGATTGA 114477 ||||| | | || | | ||| | || ||| || | || ||||| || Sbjct 141599 CAGCTTGGCAAAGTCGTACGTTTT-GTCCGGT--TTCACAAACATGTTCAGCGCGATCGA 141655 Query 114478 CGCCAGATTACACACAGAGGTCTCATCCTTATCAGTGTACTCTATAATTTCCGTACACAA 114537 |||| ||| ||||| | | |||||||| | |||||| | || || ||||||| Sbjct 141656 GGCCAAATTGCACACCGCTATTTCATCCTTCGACGAGTACTCCACTATCTCGGTACACAG 141715 Query 114538 ATTTGAACTCTTAATGGTGCCCAAGTTCTTTTGATTTGACTTTGTGTTACACGCATCCTT 114597 ||| |||| ||| |||||||| | ||||| ||||| ||| ||| ||||||||||| Sbjct 141716 ATTGGAACACTTTATGGTGCCGATGTTCTGCTGATTGCTCTTGCGGTTGCACGCATCCTT 141775 Query 114598 GTAAAGCATGTATGGCGTCCCCGTCTCCGTTTGGGACTTGAGAATAGCCTTCCAGACATC 114657 ||| |||||||| || ||||| ||| || || | || || || ||| | || Sbjct 141776 GTACAGCATGTACGGAACGCCCGTTTCCACCTGCGATTCGATGATGGCAAACCATAGGTC 141835 Query 114658 GGCGGCTGGCACAGTGGCGT-TGGCTCGCCCCTCCTCCTCGTACTTTGTGTAGAGGGCTT 114716 || ||| |||||| | ||| ||||||| ||||||| ||||| || | Sbjct 141836 CTGTGCCTTCAC-CTGGCGTATAAATCGACCCTCCTGCTCGTACCCAGTGTACAGCTTCT 141894 Query 114717 CAAACTCTTCACCCACGGCCTCTGAGAGCCCTGGTGCCTTATCTGGGCAGAAGAGAGACC 114776 | |||||||| ||| | || | | || || | | |||||| | || || Sbjct 141895 CGAACTCTTCGCCCCAAGTGTCAGCCAATCCGGGGCAGTCGTGTGGGCACATCAGGCTCC 141954 Query 114777 ATTGACCACCCTCCTCAACACGCTTCATGAAGAGGTCTGGGATCCAGAGAGCTGAGAAGA 114836 | | | |||| ||||||| |||||| || || |||||||| || || |||| | Sbjct 141955 ACATTTCGTTCGCCTCCACACGCTGCATGAACAGATCCGGGATCCACAGGGCGTAGAACA 142014 Query 114837 GATC-CCGACAGCGAGCTTCTTCATCCCCCTGATTGAGACGCAACTCCAAAAAGTCCATG 114895 || | | || | || || | | || || || || |||| ||| || | Sbjct 142015 TGTCGCGGGCACGCACCTCCTCCTTGCCGGTG-TTTTTCTTCAGATCCAGAAACTCGAAT 142073 Query 114896 ATATCCGCGTGCCACGGTTCCAGGTA 114921 |||||| ||||||| ||||| ||||| Sbjct 142074 ATATCCCCGTGCCATGGTTCGAGGTA 142099 >seq72 Length=881775 Score = 96.9 bits (106), Expect = 4e-15 Identities = 271/410 (66%), Gaps = 6/410 (1%) Strand=Plus/Minus Query 8526 TATCAAGCATCTTCCTCGGAGATGTTTGGTAAAGTTAGGGAATCCCCTCAAAATGAGGAG 8585 || ||||| || ||||||| ||| || || || ||| | || || || || || Sbjct 354529 TACCAAGCGTCCACCTCGGAACTGTACGGCAAGGTGGCTGAAACGCCGCAGAACGAAAAG 354470 Query 8586 ACACCCTTCTATCCACGATCCGTCTATGGCGTCTCAAAGGT-TGCGGCACATTGGCTCGT 8644 ||||| ||||| ||||| || || | | ||||| | | ||| | ||| | || Sbjct 354469 ACACCGTTCTACCCACGCTCACCGTACGCCTGTGCAAAGATGTACGGTT-ACTGGATTGT 354411 Query 8645 GAAGAATTACCGAGAATCCTATGGTCTCTTTGCGTGCTCCGGTATTCTCTTCAACCACGA 8704 || || || || ||| | || | || || ||| ||| || || ||||||||||| Sbjct 354410 GATAAACTATCGCGAAGCGTACAACATGTTCGCCTGCAACGGGATCCTTTTCAACCACGA 354351 Query 8705 GTCACCCCGTCGTGGCCCGGATTTCGTGACAAAGAAGATCACCGAT--GGTATCAAACAA 8762 ||||| || || || | ||||| ||| ||||||||| | ||| | || | Sbjct 354350 ATCACCGCGCCGAGGAGAAAACTTCGTTACACGCAAGATCACCCGTTCGGTTGCGAAGAT 354291 Query 8763 ATCGTCGCGGGTGAGAGGGAGTTCATTGAATTGGGGAACCTCAACGCCGAGAGGGACTGG 8822 ||| | | || || |||| | | || |||| || || || | || | |||||| Sbjct 354290 TTCG-CTC-GGACAGCAAGAGTACCTGGAGCTGGGTAATCTGGACTCGAAGCGTGACTGG 354233 Query 8823 GGACACGCCAAGGACTATGTTGAAGCCATGTGGCTCGTACTTCAACAAGAAGAGGCGGAC 8882 || |||||||| ||||| || ||||| |||||||| | | || || ||| | |||| Sbjct 354232 GGCCACGCCAAAGACTACGTGGAAGCGATGTGGCTGATGATGCAGCAGGAACGGCCGGAA 354173 Query 8883 GAATATGTCGTCGCGACGGGGGAGACACACTCCGTCAGGGAGTTCGTTGA 8932 || | |||| | || || ||||| || ||||| || | ||||| || || Sbjct 354172 GATTTTGTCATTGCTACCGGGGAAACGCACTCGGTGCGAGAGTTTGTCGA 354123 >seq7 Length=4015228 Score = 82.4 bits (90), Expect = 9e-11 Identities = 127/176 (72%), Gaps = 4/176 (2%) Strand=Plus/Plus Query 172798 CTTCCCACGGAGAGGGAACACACCGTA-GTGATCACGACCAACCACAGAAAGACCAGCAA 172856 ||| ||||| | || ||||| ||||| ||| || || || ||||| | || | || Sbjct 169998 CTTACCACGCAACGGAAACACTCCGTACGTG-TCGCGTCCGACCACTCCCAACCCGGAAA 170056 Query 172857 CTGCGAGGGTCTTCGCGGAATCACCCTCCGTCACGATGAGCGTACACTT-TCCAGATTGT 172915 | || || || || || ||||| |||||||| | |||||||||||| || | |||| Sbjct 170057 CGGCCAGCGTTTTGGCCGAATCTCCCTCCGTAAGGATGAGCGTACAGTTGAGCGAATTGC 170116 Query 172916 GCCGTCCCCGCCTTGTTCGCATCGTCCAACTTGGGAATACCAGTAATTTTGGACTT 172971 | ||| || || | ||| || || |||| ||| ||||| || |||| |||||||| Sbjct 170117 G-CGTACCAGCGTCGTTGGCGTCTTCCAGCTTCGGAATGCCCTTAATCTTGGACTT 170171 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 597179090612680